Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

24076962 .. 24078607

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAAAGTTGTAGTAGTAACAAGTCCAGGTGGTCCGGATGTTCTCAAAGAAATCGAGGTGCCTGAACCAGAACTAAAGGACGATGGAGTCCTGATAAAGGTGGCTGCCACTGCCCTGAATGAGCCTGACCTTACTGCGAGGACGAGGTCTTTGCCGCCGATGCAAAGGGAGTACCTAGGTCTGGAATGTGCAGGAACGATCGTGAAAGTCGGGAAAGACGTCCAGCGATGGAAAGTCGGCCAAGAGGTGATTTTCAATTCAGATATTGTTTGTCTTGAGGTTTGTTTGCTTGCAGAGCCACAGAGGAAATGGTGTAAGAAAAACAGTTCTAGTCTAGATGATCAATTTAATGAGAACATTGATCGAGTTTATAAGCAAAAGAAAGGCGAAAGAGTTATTAAAATGGATAGTGTAAGAAAGGTCTTCGACATGATGCCAGATCGAGATATTGTGTCCTGGAATACGGTGATTGCCGGGATGTATGAACAGGCTTTAGCAAGGGGAAAGGAGATTCATGTGTATGCCGTAAGACATGGATTTGATGCAGATGTGCTGATTGGCAGTAGCTTGATTGACATGTATGCAAACTCTACCCATACGGACGACTCTCTGAAAGTGTTCAACCTGCTACGTCGGCGTGATTCCATTTCATGGAACTTGATTATTGGAGGGTATGTGCAGAATGGTATGTTTGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

233

Amino Acids

26.23

Weight (kDa)

5.73

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 92	1.4e-12	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	97, 181, 651
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	2 cut(s)	256, 622
AjnI	CCWGG	2 cut(s)	25, 455
AluBI	AGCT	1 cut(s)	567
AluI	AGCT	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
Asp700I	GAANNNNTTC	1 cut(s)	617
AspA2I	CCTAGG	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	259, 478
AvaII	GGWCC	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	3 cut(s)	77, 222, 689
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	27, 457
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	475
BfaI	CTAG	3 cut(s)	176, 330, 335
BfuAI	ACCTGC	1 cut(s)	633
BisI	GCNGC	2 cut(s)	105, 155
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	2 cut(s)	106, 156
Bme1390I	CCNGG	3 cut(s)	27, 457, 475
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	27, 457, 475
BmsI	GCATC	3 cut(s)	150, 423, 532
BpiI	GAAGAC	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 181, 651
BseAI	TCCGGA	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	27, 457
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	43, 483
BseLI	CCNNNNNNNGG	3 cut(s)	97, 181, 651
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	2 cut(s)	210, 698
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	35, 474
BslI	CCNNNNNNNGG	3 cut(s)	97, 181, 651
BsnI	GGCC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	198, 340, 361, 439
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	4 cut(s)	198, 340, 361, 439
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	27, 457
Bst4CI	ACNGT	2 cut(s)	326, 466
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	43, 483
BstKTI	GATC	4 cut(s)	201, 343, 364, 442
BstMBI	GATC	4 cut(s)	198, 340, 361, 439
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 160, 295, 634
BstNI	CCWGG	2 cut(s)	27, 457
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	3 cut(s)	25, 455, 473
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	43, 483
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	633
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	5 cut(s)	430, 515, 533, 577, 651
CviJI	RGCY	7 cut(s)	104, 124, 240, 298, 491, 567, 699
CviKI_1	RGCY	7 cut(s)	104, 124, 240, 298, 491, 567, 699
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	4 cut(s)	200, 342, 363, 441
DpnII	GATC	4 cut(s)	198, 340, 361, 439
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	25, 455
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	5 cut(s)	433, 518, 536, 580, 654
FatI	CATG	5 cut(s)	429, 514, 532, 576, 650
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	105, 155
FokI	GGATG	2 cut(s)	50, 490
Fsp4HI	GCNGC	2 cut(s)	105, 155
FspBI	CTAG	3 cut(s)	176, 330, 335
GluI	GCNGC	2 cut(s)	105, 155
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	35, 474
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	433, 518, 536, 580, 654
HinfI	GANTC	4 cut(s)	87, 511, 605, 641
HpaII	CCGG	2 cut(s)	35, 474
HphI	GGTGA	2 cut(s)	259, 478
Hpy188I	TCNGA	2 cut(s)	262, 612
Hpy188III	TCNNGA	8 cut(s)	35, 91, 182, 202, 211, 275, 335, 443
Hpy99I	CGWCG	1 cut(s)	636
HpyCH4III	ACNGT	2 cut(s)	326, 466
HpyCH4IV	ACGT	2 cut(s)	219, 631
HpyCH4V	TGCA	6 cut(s)	163, 191, 293, 545, 584, 679
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 160, 295, 634
HpySE526I	ACGT	2 cut(s)	219, 631
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	433, 518, 536, 580, 654
Kpn2I	TCCGGA	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	198, 340, 361, 439
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	3 cut(s)	150, 423, 532
MaeI	CTAG	3 cut(s)	176, 330, 335
MaeII	ACGT	2 cut(s)	219, 631
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	200, 342, 363, 441
MboI	GATC	4 cut(s)	198, 340, 361, 439
MboII	GAAGA	1 cut(s)	415
MluCI	AATT	2 cut(s)	256, 344
MlyI	GAGTC	2 cut(s)	96, 599
MnlI	CCTC	7 cut(s)	49, 132, 138, 238, 271, 297, 662
MroI	TCCGGA	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	2 cut(s)	348, 399
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	35, 474
MspR9I	CCNGG	3 cut(s)	27, 457, 475
MvaI	CCWGG	2 cut(s)	27, 457
MwoI	GCNNNNNNNGC	4 cut(s)	110, 160, 295, 634
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	198, 340, 361, 439
NlaIII	CATG	5 cut(s)	433, 518, 536, 580, 654
NlaIV	GGNNCC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	580
PciI	ACATGT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	511, 641
PflFI	GACNNNGTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	651
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	106, 156
Ple19I	CGATCG	1 cut(s)	201
PleI	GAGTC	2 cut(s)	95, 599
PpsI	GAGTC	2 cut(s)	95, 599
PscI	ACATGT	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	25, 455
PspGI	CCWGG	2 cut(s)	25, 455
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	201
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	348, 399
SatI	GCNGC	2 cut(s)	105, 155
Sau3AI	GATC	4 cut(s)	198, 340, 361, 439
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	96, 599
ScrFI	CCNGG	3 cut(s)	27, 457, 475
SfaNI	GCATC	3 cut(s)	150, 423, 532
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	256, 344
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	3 cut(s)	176, 330, 335
StyD4I	CCNGG	3 cut(s)	25, 455, 473
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	326, 466
TaiI	ACGT	2 cut(s)	222, 634
TaqI	TCGA	4 cut(s)	54, 364, 426, 442
TasI	AATT	2 cut(s)	256, 344
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	511, 641
Tru1I	TTAA	2 cut(s)	348, 399
Tru9I	TTAA	2 cut(s)	348, 399
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	17, 498, 503, 639
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	115
Tth111I	GACNNNGTC	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	651
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	95
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	3 cut(s)	176, 330, 335
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.