MD14G1066500.v1.1

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000394
Physical Location & Seq
Forward (+)
7244581 .. 7244868
288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1066500.v1.1.491

Sequence Viewer

Length: 288 bp
ATGGGGAATACTGACTTGAAGCCCGATGCTTTTGCTTTGTCTAACGTCCTTCCAGTTTTTGCAGAATATGTACATGTTATCAAGGGAAAGGAGATTCATGGGTATACTATAAGACGTGGGCTTGATGCACATGTATTCATTGGGAGTAGCTTAATTGACATGTATGCCAATTGCACTCGAGTGCAAGATTCCCTGCGGGTGTTCAAACTGCTACCTAAGCGTGATGCCATTTCATGGAACTCGATCGTTGCAGGATGTGTGCAGAATAAACGTTTTAGCTCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

96

Amino Acids

10.67

Weight (kDa)

9.56

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AccI GTMKAC 1 cut(s) 104
AciI CCGC 1 cut(s) 196
AclI AACGTT 1 cut(s) 271
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 3 cut(s) 73, 130, 159
AgsI TTSAA 2 cut(s) 19, 205
AjiI CACGTC 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 2 cut(s) 150, 279
AluI AGCT 2 cut(s) 150, 279
Ama87I CYCGRG 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BfaI CTAG 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 116
BmsI GCATC 3 cut(s) 16, 115, 214
Bpu10I CCTNAGC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 53
BssMI GATC 1 cut(s) 243
BssNAI GTATAC 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 3 cut(s) 77, 134, 163
BstZ17I GTATAC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 260
Csp6I GTAC 1 cut(s) 71
CviAII CATG 5 cut(s) 74, 98, 131, 160, 234
CviJI RGCY 4 cut(s) 22, 121, 150, 279
CviKI_1 RGCY 4 cut(s) 22, 121, 150, 279
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 216
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 177
FaeI CATG 5 cut(s) 77, 101, 134, 163, 237
FaiI YATR 9 cut(s) 69, 75, 99, 105, 110, 132, 161, 165, 235
FatI CATG 5 cut(s) 73, 97, 130, 159, 233
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 104
FokI GGATG 1 cut(s) 267
FspBI CTAG 1 cut(s) 282
Hin1II CATG 5 cut(s) 77, 101, 134, 163, 237
HinfI GANTC 2 cut(s) 94, 188
Hpy166II GTNNAC 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 3 cut(s) 45, 115, 271
HpyCH4V TGCA 6 cut(s) 62, 128, 174, 184, 251, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 3 cut(s) 45, 115, 271
Hsp92II CATG 5 cut(s) 77, 101, 134, 163, 237
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 3 cut(s) 66, 206, 237
LweI GCATC 3 cut(s) 16, 115, 214
MaeI CTAG 1 cut(s) 282
MaeII ACGT 3 cut(s) 45, 115, 271
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MfeI CAATTG 1 cut(s) 169
MluCI AATT 2 cut(s) 153, 169
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 179
MunI CAATTG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 243
NlaIII CATG 5 cut(s) 77, 101, 134, 163, 237
NspI RCATGY 3 cut(s) 77, 134, 163
OliI CACNNNNGTG 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 177
PciI ACATGT 3 cut(s) 73, 130, 159
PfeI GAWTC 2 cut(s) 94, 188
PflMI CCANNNNNTGG 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 246
PscI ACATGT 3 cut(s) 73, 130, 159
Psp1406I AACGTT 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 177
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 243
SetI ASST 7 cut(s) 48, 118, 152, 217, 274, 281, 287
SfaNI GCATC 3 cut(s) 16, 115, 214
Sfr274I CTCGAG 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 153, 169
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 282
TaiI ACGT 3 cut(s) 48, 118, 274
TaqI TCGA 2 cut(s) 178, 242
TasI AATT 2 cut(s) 153, 169
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 94, 188
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 86, 127, 222
Van91I CCANNNNNTGG 1 cut(s) 234
XceI RCATGY 3 cut(s) 77, 134, 163
XhoI CTCGAG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.