FvH4_6g30490

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000394
Physical Location & Seq
Reverse (-)
23601214 .. 23604430
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30490.t1

Sequence Viewer

Length: 900 bp
ATGTCCAAGCTCGGTGGATCTGCTGCTGCTGGGAGTTCCAAGAGAGGGAAAGGTAGTACTAGTGATAACAAGAGATCCGACGAGCAACCATCGCGGACAATGTACGCCGTGGTTACCACGACTCTAGGTGCGGCGGATGTTCTCCAAGTACGGCTTGTGCCCAAACCGAAACCTAAAGCAAACGAAGTGCTCGTGGAAGTGGCTTATGCTGGGGTGAATCGACCGGACATACACCAAAGGGAGATCATGTTACCACCCGATATTAAGAATACAAGAAGCGAGTATCTCGGCCCCGAATGTTCGGGCAAAGTCAGTGAGCATGGGGCGGGATTGTCGGAAGAAGATAAGAAATCCTGGAAAATAGGGAACACGGTGTGTGCTATTACCAATGGAGGTAGCTATGCGGAGTACGTGGCTGTTCCGGTTGCAAATTTGCTTCCGATTCCATCTAATGCAACTCTAAAGCAAGCCGCAACATTTCCTCAAGCTGCTTGTACGGTGTGGTCGGAGCTGTTTATGAAGGAAAGGCTATCTGAGGGCCTCATAGAATATGAGTATCCGGGTTCCCGGCTATCTGCCGGTGAAACACTTTTGATTCATGGGGGTTCAAGTGGTATTGGAACATTTGCTATTCAAATGGCTAAACATCAGGGGGTGACTGTATATGTCACTGCAGGTAGTAATGAGAAACTAGATGCTTGTGGGAAGCTTGGAGCCCATGGTTGCATCAATTATCATAAGGAGGAGTTTGAAAAAGTGGTAATGAAGGAAACAAAAGGCAAAGGTGTGGATGTCATCTTGGATTGCCTTGGGGAAAAGTATACACTGGAAAACTTAACTTGCTTAAGTTCTGGGGGTAGGCTCGTCACAATTGGTCCTTGCTGTAATACACAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

300

Amino Acids

31.77

Weight (kDa)

7.53

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 60 - 149 5.7e-11 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 205 - 292 1.9e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 237 - 292 1.6e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 821
AccII CGCG 1 cut(s) 94
AciI CCGC 6 cut(s) 94, 131, 134, 326, 404, 471
AclWI GGATC 2 cut(s) 25, 69
AcsI RAATTY 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 5 cut(s) 58, 104, 150, 410, 496
AfiI CCNNNNNNNGG 1 cut(s) 45
AflII CTTAAG 1 cut(s) 844
AgsI TTSAA 3 cut(s) 609, 635, 752
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 5 cut(s) 10, 399, 488, 511, 709
AluI AGCT 5 cut(s) 10, 399, 488, 511, 709
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 2 cut(s) 25, 69
AoxI GGCC 2 cut(s) 289, 538
ApeKI GCWGC 3 cut(s) 23, 26, 488
ApoI RAATTY 1 cut(s) 430
AspS9I GGNCC 3 cut(s) 290, 538, 875
AsuC2I CCSGG 2 cut(s) 561, 568
AsuHPI GGTGA 3 cut(s) 226, 593, 667
AvaII GGWCC 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 718
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 10, 13, 475
BccI CCATC 2 cut(s) 97, 454
BceAI ACGGC 2 cut(s) 92, 167
BciT130I CCWGG 1 cut(s) 355
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 2 cut(s) 561, 568
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 3 cut(s) 60, 125, 692
BfmI CTRYAG 1 cut(s) 672
BfrI CTTAAG 1 cut(s) 844
BfuAI ACCTGC 1 cut(s) 665
BfuI GTATCC 1 cut(s) 567
BisI GCNGC 5 cut(s) 24, 27, 132, 471, 489
BlsI GCNGC 5 cut(s) 25, 28, 133, 472, 490
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 3 cut(s) 355, 561, 568
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 3 cut(s) 290, 538, 875
BmiI GGNNCC 3 cut(s) 292, 565, 715
BmrFI CCNGG 3 cut(s) 355, 561, 568
BmsI GCATC 2 cut(s) 685, 735
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 2 cut(s) 561, 568
BsaAI YACGTR 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 108, 718, 808
BsaWI WCCGGW 2 cut(s) 223, 421
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 1 cut(s) 831
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 108, 718, 808
BseGI GGATG 2 cut(s) 142, 796
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 3 cut(s) 10, 13, 475
BseYI CCCAGC 2 cut(s) 29, 209
Bsh1236I CGCG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 291, 540
BsiEI CGRYCG 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 224, 422, 560, 568, 579
BslI CCNNNNNNNGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 291, 540
Bsp1286I GDGCHC 3 cut(s) 162, 192, 718
Bsp143I GATC 3 cut(s) 17, 74, 243
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 6 cut(s) 94, 131, 134, 326, 404, 471
BspANI GGCC 2 cut(s) 291, 540
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 3 cut(s) 292, 565, 715
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 2 cut(s) 25, 69
BspTI CTTAAG 1 cut(s) 844
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 3 cut(s) 108, 718, 808
BssMI GATC 3 cut(s) 17, 74, 243
BssNAI GTATAC 1 cut(s) 822
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 718, 808
Bst1107I GTATAC 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 373, 499, 661
BstAFI CTTAAG 1 cut(s) 844
BstBAI YACGTR 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 2 cut(s) 108, 718
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 2 cut(s) 142, 796
BstFNI CGCG 1 cut(s) 94
BstKTI GATC 3 cut(s) 20, 77, 246
BstMBI GATC 3 cut(s) 17, 74, 243
BstMCI CGRYCG 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 355
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 353, 559, 566
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 10, 13, 475
BstX2I RGATCY 2 cut(s) 17, 74
BstYI RGATCY 2 cut(s) 17, 74
BstZ17I GTATAC 1 cut(s) 822
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 2 cut(s) 291, 540
BtgI CCRYGG 2 cut(s) 108, 718
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 142, 796
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 3 cut(s) 319, 669, 824
BveI ACCTGC 1 cut(s) 665
Cac8I GCNNGC 1 cut(s) 468
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 3 cut(s) 290, 538, 875
Csp6I GTAC 5 cut(s) 57, 103, 149, 409, 495
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 4 cut(s) 247, 320, 599, 719
CviQI GTAC 5 cut(s) 57, 103, 149, 409, 495
DdeI CTNAG 1 cut(s) 534
DpnI GATC 3 cut(s) 19, 76, 245
DpnII GATC 3 cut(s) 17, 74, 243
DraIII CACNNNGTG 1 cut(s) 375
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 718, 808
Eco24I GRGCYC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 875
Eco91I GGTNACC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 718, 808
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 718, 808
FaeI CATG 4 cut(s) 250, 323, 602, 722
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 4 cut(s) 246, 319, 598, 718
FauI CCCGC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 5 cut(s) 24, 27, 132, 471, 489
FokI GGATG 2 cut(s) 149, 803
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 5 cut(s) 24, 27, 132, 471, 489
FspBI CTAG 3 cut(s) 60, 125, 692
GluI GCNGC 5 cut(s) 24, 27, 132, 471, 489
GsaI CCCAGC 2 cut(s) 33, 213
HaeIII GGCC 2 cut(s) 291, 540
HapII CCGG 5 cut(s) 224, 422, 560, 568, 579
Hin1II CATG 4 cut(s) 250, 323, 602, 722
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 121, 217, 442, 595
HpaII CCGG 5 cut(s) 224, 422, 560, 568, 579
HphI GGTGA 3 cut(s) 226, 593, 667
Hpy166II GTNNAC 1 cut(s) 822
Hpy188I TCNGA 5 cut(s) 79, 337, 441, 508, 535
Hpy8I GTNNAC 1 cut(s) 822
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 514, 760
HpyCH4III ACNGT 3 cut(s) 373, 499, 661
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 428, 455, 674, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 4 cut(s) 250, 323, 602, 722
Kzo9I GATC 3 cut(s) 17, 74, 243
LmnI GCTCC 2 cut(s) 508, 713
Lsp1109I GCAGC 3 cut(s) 10, 13, 475
LweI GCATC 2 cut(s) 685, 735
MaeI CTAG 3 cut(s) 60, 125, 692
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 5 cut(s) 112, 249, 655, 667, 865
MalI GATC 3 cut(s) 19, 76, 245
MboI GATC 3 cut(s) 17, 74, 243
MboII GAAGA 2 cut(s) 350, 353
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 2 cut(s) 17, 74
MhlI GDGCHC 3 cut(s) 162, 192, 718
MluCI AATT 3 cut(s) 430, 730, 870
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 3 cut(s) 102, 315, 486
MnlI CCTC 6 cut(s) 38, 386, 492, 529, 551, 736
MseI TTAA 4 cut(s) 264, 836, 845, 898
MspCI CTTAAG 1 cut(s) 844
MspI CCGG 5 cut(s) 224, 422, 560, 568, 579
MspR9I CCNGG 3 cut(s) 355, 561, 568
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 1 cut(s) 355
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 561, 568
NcoI CCATGG 1 cut(s) 718
NdeII GATC 3 cut(s) 17, 74, 243
NlaIII CATG 4 cut(s) 250, 323, 602, 722
NlaIV GGNNCC 3 cut(s) 292, 565, 715
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 3 cut(s) 655, 667, 865
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 3 cut(s) 217, 442, 595
PfoI TCCNGGA 1 cut(s) 353
PkrI GCNGC 5 cut(s) 25, 28, 133, 472, 490
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 353
PspEI GGTNACC 1 cut(s) 112
PspFI CCCAGC 2 cut(s) 29, 209
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 292, 565, 715
PspPI GGNCC 3 cut(s) 290, 538, 875
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 17, 74
RsaI GTAC 5 cut(s) 58, 104, 150, 410, 496
RsaNI GTAC 5 cut(s) 57, 103, 149, 409, 495
SaqAI TTAA 4 cut(s) 264, 836, 845, 898
SatI GCNGC 5 cut(s) 24, 27, 132, 471, 489
Sau3AI GATC 3 cut(s) 17, 74, 243
Sau96I GGNCC 3 cut(s) 290, 538, 875
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 3 cut(s) 355, 561, 568
SduI GDGCHC 3 cut(s) 162, 192, 718
SfaNI GCATC 2 cut(s) 685, 735
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 875
SmlI CTYRAG 2 cut(s) 483, 844
SmoI CTYRAG 2 cut(s) 483, 844
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 3 cut(s) 430, 730, 870
SsiI CCGC 6 cut(s) 94, 131, 134, 326, 404, 471
SspMI CTAG 3 cut(s) 60, 125, 692
StyD4I CCNGG 3 cut(s) 353, 559, 566
StyI CCWWGG 2 cut(s) 718, 808
TaaI ACNGT 3 cut(s) 373, 499, 661
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 220
TasI AATT 3 cut(s) 430, 730, 870
TatI WGTACW 1 cut(s) 56
TauI GCSGC 2 cut(s) 134, 473
TfiI GAWTC 3 cut(s) 217, 442, 595
Tru1I TTAA 4 cut(s) 264, 836, 845, 898
Tru9I TTAA 4 cut(s) 264, 836, 845, 898
TscAI CASTG 3 cut(s) 319, 676, 831
TseFI GTSAC 3 cut(s) 655, 667, 865
TseI GCWGC 3 cut(s) 23, 26, 488
Tsp45I GTSAC 3 cut(s) 655, 667, 865
TspDTI ATGAA 3 cut(s) 533, 587, 779
TspRI CASTG 3 cut(s) 319, 676, 831
Vha464I CTTAAG 1 cut(s) 844
VpaK11BI GGWCC 1 cut(s) 875
XapI RAATTY 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 3 cut(s) 60, 125, 692
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.