Rh5BG028000

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000394
Physical Location & Seq
Reverse (-)
1955174 .. 1958479
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG028000.1

Sequence Viewer

Length: 339 bp
ATGATTGATTGGCCAGGTGACGGGGAAAAATTAAAGGCCTGTAGGGATCTTGGAGCTGAATTATGCATTAATCATAACACAGAAGACTTTGCTGAACTGGTAATGCAGAAGACAGAAGGAAGAGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAAGCCTTAATTGTTAAGAAGGTGTTGAAGCATGTTTGGCCTGCAATAAGGAATGGCCATGTGAAAGCTTTCAACAACAACATCAAGGCTTTCACATTCAATCAAGCAGTAGAGGCGCATGTACTCATGGAGACTGGCAACTTTACTGGAAAGATTTTGCTTGTTCCAGGGACATTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

8.88

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 11, 211
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 184, 229, 256
AjnI CCWGG 2 cut(s) 13, 322
AluBI AGCT 2 cut(s) 56, 224
AluI AGCT 2 cut(s) 56, 224
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 54
AoxI GGCC 4 cut(s) 11, 36, 194, 211
AseI ATTAAT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 29
BalI TGGCCA 2 cut(s) 13, 213
BbsI GAAGAC 2 cut(s) 90, 116
BciT130I CCWGG 2 cut(s) 15, 324
BcoDI GTCTC 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 15, 324
BmrFI CCNGG 2 cut(s) 15, 324
BpiI GAAGAC 2 cut(s) 90, 116
BpmI CTGGAG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 102, 295, 307
Bse3DI GCAATG 1 cut(s) 131
BseBI CCWGG 2 cut(s) 15, 324
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 102, 295, 307
BshFI GGCC 4 cut(s) 13, 38, 196, 213
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 4 cut(s) 13, 38, 196, 213
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 136
BspANI GGCC 4 cut(s) 13, 38, 196, 213
BspPI GGATC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 3 cut(s) 102, 295, 307
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 15, 324
Bst6I CTCTTC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 198
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 193, 269
BstNI CCWGG 2 cut(s) 15, 324
BstNSI RCATGY 2 cut(s) 191, 278
BstSCI CCNGG 2 cut(s) 13, 322
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 90, 116
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 4 cut(s) 13, 38, 196, 213
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 278
CviAII CATG 5 cut(s) 188, 215, 275, 283, 336
CviJI RGCY 8 cut(s) 13, 38, 56, 161, 196, 213, 224, 245
CviKI_1 RGCY 8 cut(s) 13, 38, 56, 161, 196, 213, 224, 245
CviQI GTAC 1 cut(s) 278
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 11, 211
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 13, 322
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 5 cut(s) 191, 218, 278, 286, 339
FaiI YATR 7 cut(s) 64, 75, 189, 216, 276, 284, 337
FatI CATG 5 cut(s) 187, 214, 274, 282, 335
GlaI GCGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 4 cut(s) 13, 38, 196, 213
HhaI GCGC 1 cut(s) 274
Hin1II CATG 5 cut(s) 191, 218, 278, 286, 339
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 222
HphI GGTGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 110, 169
HpyCH4V TGCA 4 cut(s) 66, 106, 131, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 269
Hsp92II CATG 5 cut(s) 191, 218, 278, 286, 339
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 8 cut(s) 27, 52, 83, 162, 210, 276, 288, 309
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 95, 121, 132
MflI RGATCY 1 cut(s) 46
MlsI TGGCCA 2 cut(s) 13, 213
MluCI AATT 3 cut(s) 29, 59, 165
MluNI TGGCCA 2 cut(s) 13, 213
MnlI CCTC 1 cut(s) 262
Mox20I TGGCCA 2 cut(s) 13, 213
Mph1103I ATGCAT 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 2 cut(s) 13, 213
MseI TTAA 4 cut(s) 32, 69, 164, 171
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 2 cut(s) 13, 213
MspR9I CCNGG 2 cut(s) 15, 324
MvaI CCWGG 2 cut(s) 15, 324
MwoI GCNNNNNNNGC 2 cut(s) 193, 269
NdeII GATC 1 cut(s) 46
NlaIII CATG 5 cut(s) 191, 218, 278, 286, 339
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 2 cut(s) 191, 278
PceI AGGCCT 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 13, 322
PspGI CCWGG 2 cut(s) 13, 322
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 4 cut(s) 32, 69, 164, 171
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 15, 324
SetI ASST 4 cut(s) 19, 58, 180, 226
SfcI CTRYAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 334
Sse9I AATT 3 cut(s) 29, 59, 165
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 136
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 13, 322
TasI AATT 3 cut(s) 29, 59, 165
TatI WGTACW 1 cut(s) 277
Tru1I TTAA 4 cut(s) 32, 69, 164, 171
Tru9I TTAA 4 cut(s) 32, 69, 164, 171
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 170
VspI ATTAAT 1 cut(s) 69
XceI RCATGY 2 cut(s) 191, 278
XmnI GAANNNNTTC 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.