Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

34866317 .. 34867276

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1217800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGACTTGGAAGCCCGGTGCTTTTACTTTGTCTAGTGTCCTTCCAGTTTTTGCAGAATATGTAGATGTTATCAAGGGAAAGGAGATTCATGGGTATGCTATAAGACGTGGGCTTGATGCAGATATTCCCTGCGGGTGTTCAACCTGCTACCTAATCGTGATGCCATTTCATGGAACTCGATCATTGCAGGATGTGTGCAGAATAAATGTTTTAGCTCTAGTTGAATTGTGGATTCAGTTTAGGAGTTTTGGCATCTGTGCGTGGGTTACCTATTGCATTATGCCTTACTACATTAGTCTACAGGGAGAAGGTGGCTTTGGACCTGTGTACAAGGGTACACTGATAGGAGGAAAAGATATTGCAGTAAAGAGGCTTTCAAAGAATTCCGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

133

Amino Acids

14.6

Weight (kDa)

8.77

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	301
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	2 cut(s)	332, 340
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	3 cut(s)	144, 227, 381
AjiI	CACGTC	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	18
BfaI	CTAG	2 cut(s)	36, 221
BfmI	CTRYAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	3 cut(s)	109, 153, 264
BpuMI	CCSGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	389
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	18, 390
BslI	CCNNNNNNNGG	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	1 cut(s)	135
BspEI	TCCGGA	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	182
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	331, 339
CviAII	CATG	2 cut(s)	92, 173
CviJI	RGCY	5 cut(s)	16, 115, 218, 318, 376
CviKI_1	RGCY	5 cut(s)	16, 115, 218, 318, 376
CviQI	GTAC	2 cut(s)	331, 339
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	385
FaeI	CATG	2 cut(s)	95, 176
FaiI	YATR	6 cut(s)	63, 93, 99, 104, 174, 284
FatI	CATG	2 cut(s)	91, 172
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	301
FokI	GGATG	1 cut(s)	206
FspBI	CTAG	2 cut(s)	36, 221
HapII	CCGG	2 cut(s)	18, 390
Hin1II	CATG	2 cut(s)	95, 176
HinfI	GANTC	2 cut(s)	88, 235
HpaII	CCGG	2 cut(s)	18, 390
Hpy166II	GTNNAC	3 cut(s)	302, 331, 341
Hpy188III	TCNNGA	2 cut(s)	160, 390
Hpy8I	GTNNAC	3 cut(s)	302, 331, 341
HpyAV	CCTTC	2 cut(s)	53, 305
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	56, 122, 190, 201, 279, 365
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	95, 176
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	31, 60, 145, 160, 176, 290, 339
LweI	GCATC	3 cut(s)	109, 153, 264
MaeI	CTAG	2 cut(s)	36, 221
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MluCI	AATT	2 cut(s)	227, 385
MnlI	CCTC	2 cut(s)	344, 366
MroI	TCCGGA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	2 cut(s)	18, 390
MspR9I	CCNGG	1 cut(s)	18
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	95, 176
PfeI	GAWTC	2 cut(s)	88, 235
PflMI	CCANNNNNTGG	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	323
RsaI	GTAC	2 cut(s)	332, 340
RsaNI	GTAC	2 cut(s)	331, 339
RseI	CAYNNNNRTG	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	7 cut(s)	112, 149, 156, 220, 275, 316, 328
SfaNI	GCATC	3 cut(s)	109, 153, 264
SfcI	CTRYAG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	227, 385
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	36, 221
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	227, 385
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	88, 235
TscAI	CASTG	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	80, 161
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	2 cut(s)	36, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.