RchiOBHm_Chr5g0030291

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000394
Physical Location & Seq
Reverse (-)
24018425 .. 24019062
638 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30962

Sequence Viewer

Length: 429 bp
ATGGCAGCTGTTCAAGAAGGATTAGTATTTCCTATCCCCAAAAGCATTTCTGTGGAGGAGGCTGCTAGTTTCCCTCAGGTGGCTTGTAGTGTTTGGGCCGCACTTTTTACTGAAGACATGCCATCTTCTGAATATTGGTTACCTGCTGGTAGGAACAGTCGGCTAATTGCCGGTGAAACTATATTGGTTCATGGGGGATCCGGGGGAATTGGTTCATTTGCAATACAGTTAGCAAAAGCCCGGGGTGTAAAGGTGATTGTCACAGCAGGTAATTCTAAGTTTTTCATTTACGAATCAGCTAGCTCAAAATTATTTTTCATCACAGCAGGTAATTCTAAGTTTTTAATTTACGAATTAGCTAGCTCAAAATTATTTTTCATATACGTACTTAAGGATATAAATCATGACAATAAGGTAGTGACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

142

Amino Acids

15.29

Weight (kDa)

7.84

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 151, 257, 317
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 192, 205
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 79
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 5 cut(s) 8, 299, 303, 359, 363
AluI AGCT 5 cut(s) 8, 299, 303, 359, 363
AlwI GGATC 2 cut(s) 192, 205
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 5, 62
Asp700I GAANNNNTTC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 3 cut(s) 202, 241, 242
AsuHPI GGTGA 2 cut(s) 185, 265
AsuNHI GCTAGC 2 cut(s) 299, 359
AvaI CYCGRG 1 cut(s) 240
AxyI CCTNAGG 1 cut(s) 75
BamHI GGATCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 17, 49
BccI CCATC 1 cut(s) 130
BcnI CCSGG 3 cut(s) 202, 241, 242
BfaI CTAG 3 cut(s) 66, 300, 360
BfrI CTTAAG 1 cut(s) 389
BfuAI ACCTGC 3 cut(s) 151, 257, 317
BisI GCNGC 3 cut(s) 6, 63, 99
BlsI GCNGC 3 cut(s) 7, 64, 100
Bme1390I CCNGG 3 cut(s) 202, 241, 242
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 202, 241, 242
BmtI GCTAGC 2 cut(s) 303, 363
BpiI GAAGAC 1 cut(s) 120
BpuMI CCSGG 3 cut(s) 202, 241, 242
BsaAI YACGTR 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 201, 240, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 399
BseDI CCNNGG 3 cut(s) 201, 240, 241
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 17, 49
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 171, 201, 241
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 240
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 3 cut(s) 151, 257, 317
BspOI GCTAGC 2 cut(s) 303, 363
BspPI GGATC 2 cut(s) 192, 205
BspTI CTTAAG 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 201, 240, 241
BssMI GATC 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 158, 228
BstAFI CTTAAG 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 301, 361
BstDEI CTNAG 3 cut(s) 75, 276, 336
BstEII GGTNACC 1 cut(s) 138
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 121
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 200, 239, 240
BstSNI TACGTA 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 17, 49
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 98
BveI ACCTGC 3 cut(s) 151, 257, 317
Cac8I GCNNGC 2 cut(s) 301, 361
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 96
Cfr9I CCCGGG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 386
CviAII CATG 3 cut(s) 118, 191, 404
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 3 cut(s) 75, 276, 336
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco105I TACGTA 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 138
FaeI CATG 3 cut(s) 121, 194, 407
FaiI YATR 7 cut(s) 119, 182, 192, 380, 382, 398, 405
FatI CATG 3 cut(s) 117, 190, 403
Fnu4HI GCNGC 3 cut(s) 6, 63, 99
Fsp4HI GCNGC 3 cut(s) 6, 63, 99
FspBI CTAG 3 cut(s) 66, 300, 360
GluI GCNGC 3 cut(s) 6, 63, 99
HaeIII GGCC 1 cut(s) 98
HapII CCGG 3 cut(s) 171, 201, 241
Hin1II CATG 3 cut(s) 121, 194, 407
HinfI GANTC 1 cut(s) 293
HpaII CCGG 3 cut(s) 171, 201, 241
HphI GGTGA 2 cut(s) 185, 265
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 14, 404
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 158, 228
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 75, 276, 336
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 3 cut(s) 121, 194, 407
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 8 cut(s) 62, 132, 156, 184, 214, 252, 254, 312
Lsp1109I GCAGC 2 cut(s) 17, 49
MaeI CTAG 3 cut(s) 66, 300, 360
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 3 cut(s) 138, 259, 418
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 117, 125
MflI RGATCY 1 cut(s) 197
MluCI AATT 8 cut(s) 165, 207, 271, 308, 331, 345, 353, 368
MnlI CCTC 3 cut(s) 49, 52, 84
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 2 cut(s) 344, 390
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 8
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 3 cut(s) 171, 201, 241
MspR9I CCNGG 3 cut(s) 202, 241, 242
NciI CCSGG 3 cut(s) 202, 241, 242
NdeII GATC 1 cut(s) 197
NheI GCTAGC 2 cut(s) 299, 359
NlaIII CATG 3 cut(s) 121, 194, 407
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 259, 418
NspI RCATGY 1 cut(s) 121
PagI TCATGA 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 7, 64, 100
Ppu21I YACGTR 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 344, 390
SatI GCNGC 3 cut(s) 6, 63, 99
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 3 cut(s) 202, 241, 242
SmaI CCCGGG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SnaBI TACGTA 1 cut(s) 385
Sse9I AATT 8 cut(s) 165, 207, 271, 308, 331, 345, 353, 368
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 134
SspMI CTAG 3 cut(s) 66, 300, 360
StyD4I CCNGG 3 cut(s) 200, 239, 240
TaaI ACNGT 2 cut(s) 158, 228
TaiI ACGT 1 cut(s) 387
TasI AATT 8 cut(s) 165, 207, 271, 308, 331, 345, 353, 368
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 344, 390
Tru9I TTAA 2 cut(s) 344, 390
TseFI GTSAC 2 cut(s) 259, 418
TseI GCWGC 2 cut(s) 5, 62
Tsp45I GTSAC 2 cut(s) 259, 418
TspDTI ATGAA 5 cut(s) 179, 204, 274, 307, 367
TspMI CCCGGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 389
XceI RCATGY 1 cut(s) 121
XmaI CCCGGG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 66, 300, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.