Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

24026588 .. 24026878

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTATGAACAAGCTTTAGCAAGGTTGAAAGAGATGGGGAATGCCAACTTGAAGCCTGATTCTTTTACTTTGTCTAGTGTTCTTCCGGTTTTTGCAGAGTATGTAGATATTAAGGGAAAGGAGATTCATTTGTATGCCGTAAGACATGTCAGTAGCTTGATTGACATGTGTGGAAACTCTACCCATACAGAGGACTCTCTGAAAGTGTTCAGCCTGCTATGTCGGCGTGATTCCATTTCGTGGAACTCGATTTTTGGAGGATGTGTGAAGAATGGTATGTTTGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

96

Amino Acids

10.71

Weight (kDa)

6.25

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	190, 240
AflIII	ACRYGT	2 cut(s)	145, 165
AgsI	TTSAA	2 cut(s)	28, 52
AluBI	AGCT	2 cut(s)	14, 156
AluI	AGCT	2 cut(s)	14, 156
Asp700I	GAANNNNTTC	1 cut(s)	206
BccI	CCATC	2 cut(s)	28, 278
BceAI	ACGGC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 240
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	190, 240
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	190, 240
BsmI	GAATGC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNSI	RCATGY	2 cut(s)	149, 169
BtsCI	GGATG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	146, 166
CviJI	RGCY	5 cut(s)	14, 55, 156, 213, 288
CviKI_1	RGCY	5 cut(s)	14, 55, 156, 213, 288
FaeI	CATG	2 cut(s)	149, 169
FaiI	YATR	8 cut(s)	6, 102, 135, 147, 167, 186, 220, 278
FatI	CATG	2 cut(s)	145, 165
FokI	GGATG	1 cut(s)	273
FspBI	CTAG	1 cut(s)	75
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	149, 169
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	4 cut(s)	59, 124, 194, 230
HpaII	CCGG	1 cut(s)	86
Hpy188I	TCNGA	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	149, 169
LpnPI	CCDG	3 cut(s)	69, 99, 227
MaeI	CTAG	1 cut(s)	75
MboII	GAAGA	2 cut(s)	74, 280
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	184, 251
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	149, 169
NspI	RCATGY	2 cut(s)	149, 169
PciI	ACATGT	2 cut(s)	145, 165
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	59, 124, 230
PflMI	CCANNNNNTGG	1 cut(s)	240
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	2 cut(s)	145, 165
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	111
SchI	GAGTC	1 cut(s)	188
SetI	ASST	3 cut(s)	16, 26, 158
SmiMI	CAYNNNNRTG	1 cut(s)	132
SspMI	CTAG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	59, 124, 230
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	21, 116
Van91I	CCANNNNNTGG	1 cut(s)	240
XceI	RCATGY	2 cut(s)	149, 169
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.