Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

63457967 .. 63459565

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAGGCGGTCCTCCGAGTACAAGAAGTAGAAGACCCAGAAATCAAGGACGACGAGGTTCTTATCAAAGTCGAGGCCACCGCTCTGAACCGAGCCGACACTTTTCAGAGGAAGGGACTGTACCTACCACCTCCGGGGTCCAGTCACTACCTGGGCGTCGAATGTTCTGGAACCATCGAGGCCGTCGGGAAACACGTGTCAAGATGGAACGTGGGTGATCAGGTGTGTGCTTTACTTAATGGAGGAGGGTATGCTGAGAAGGTGGCTGTTCCGGCGGGACAGGTTCTTCCGGTTCCACCTGGGATTTCTTTGAAGGATGCTGCGAGCTTTCCGGAGGTGGCGTGCGCTATCTGGTCCACCATTTTTATGATGAGCCGGCTATCTTCGGGCGAAACACTTTTGGTAACTTGCTTTTACATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

5.12

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	17 - 99	3.5e-18	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	3 cut(s)	8, 81, 275
AcvI	CACGTG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	21, 122
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	2 cut(s)	193, 195
AgsI	TTSAA	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	150, 298
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	2 cut(s)	75, 180
ApeKI	GCWGC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	10, 138, 354
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	3 cut(s)	10, 138, 354
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	2 cut(s)	182, 198
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	152, 300
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	135, 152, 300
Bme18I	GGWCC	3 cut(s)	10, 138, 354
BmgT120I	GGNCC	3 cut(s)	10, 138, 354
BmiI	GGNNCC	3 cut(s)	139, 172, 294
BmrFI	CCNGG	3 cut(s)	135, 152, 300
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	134, 151, 299
BsaWI	WCCGGW	2 cut(s)	289, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	152, 300
BseDI	CCNNGG	3 cut(s)	134, 151, 299
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	77, 182
BsiSI	CCGG	5 cut(s)	134, 272, 290, 332, 376
BslFI	GGGAC	2 cut(s)	129, 291
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	129, 291
BsnI	GGCC	2 cut(s)	77, 182
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	8, 81, 275
BspANI	GGCC	2 cut(s)	77, 182
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	139, 172, 294
BsrBI	CCGCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	134, 151, 299
BssMI	GATC	1 cut(s)	217
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	152, 300
Bst4CI	ACNGT	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	325, 343, 377
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	152, 300
BstSCI	CCNGG	3 cut(s)	133, 150, 298
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	77, 182
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	325, 343, 377
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	3 cut(s)	10, 138, 354
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	20, 121
CviJI	RGCY	7 cut(s)	77, 95, 182, 266, 327, 375, 379
CviKI_1	RGCY	7 cut(s)	77, 95, 182, 266, 327, 375, 379
CviQI	GTAC	2 cut(s)	20, 121
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	10, 138, 354
Eco72I	CACGTG	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	150, 298
FaiI	YATR	3 cut(s)	252, 368, 419
FaqI	GGGAC	2 cut(s)	129, 291
FauI	CCCGC	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	321
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	77, 182
HapII	CCGG	5 cut(s)	134, 272, 290, 332, 376
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HpaII	CCGG	5 cut(s)	134, 272, 290, 332, 376
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	3 cut(s)	17, 87, 108
Hpy188III	TCNNGA	4 cut(s)	168, 187, 201, 332
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	3 cut(s)	56, 161, 188
HpyAV	CCTTC	3 cut(s)	106, 253, 307
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	2 cut(s)	195, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	195, 210
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	331
KroI	GCCGGC	1 cut(s)	375
KroNI	GCCGGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	2 cut(s)	195, 210
MaeIII	GTNAC	2 cut(s)	143, 403
MalI	GATC	1 cut(s)	219
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	44, 278, 375
MnlI	CCTC	9 cut(s)	23, 49, 67, 102, 141, 172, 236, 239, 328
MroI	TCCGGA	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	375
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	5 cut(s)	134, 272, 290, 332, 376
MspR9I	CCNGG	3 cut(s)	135, 152, 300
MvaI	CCWGG	2 cut(s)	152, 300
MwoI	GCNNNNNNNGC	1 cut(s)	272
NaeI	GCCGGC	1 cut(s)	377
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	217
NgoMIV	GCCGGC	1 cut(s)	375
NlaIV	GGNNCC	3 cut(s)	139, 172, 294
NmuCI	GTSAC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	150, 298
PspCI	CACGTG	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	150, 298
PspN4I	GGNNCC	3 cut(s)	139, 172, 294
PspPI	GGNCC	3 cut(s)	10, 138, 354
RsaI	GTAC	2 cut(s)	21, 122
RsaNI	GTAC	2 cut(s)	20, 121
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	3 cut(s)	10, 138, 354
ScrFI	CCNGG	3 cut(s)	135, 152, 300
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	3 cut(s)	10, 138, 354
SmiMI	CAYNNNNRTG	1 cut(s)	365
SsiI	CCGC	3 cut(s)	8, 81, 275
StyD4I	CCNGG	3 cut(s)	133, 150, 298
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	2 cut(s)	198, 213
TaqI	TCGA	3 cut(s)	72, 159, 177
TatI	WGTACW	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	3 cut(s)	10, 138, 354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.