Rw1G002510

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
4544257 .. 4546486
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002510.1

Sequence Viewer

Length: 984 bp
ATGAAGGCAGTAGTGGTAACGACCCCCGGCGGACCGGAGGTCCTCCGAGTACAAGAAGTAGAAGACCCAGAAATCAAGGACGACGAGGTTCTTATCAAAGTCGAGGCCACCGCTCTGAACCGAGCCGACACTTTTCAGAGGAAGGGACTGTACCTACCACCTCCGGGGTCCAGTCACTACCTGGGCGTCGAATGTTCTGGAACCATCGAGGCCGTCGGGAAACACGTGTCAAGATGGAACGTGGGTGATCAGGTGTGTGCTTTACTTAATGGAGGAGGGTATGCTGAGAAGGTGGCTGTTCCGGCGGGACAGGTTCTACCGGTTCCACCTGGGATTTCTTTGAAGGATGCTGCGAGCTTTCCGGAGGTGGCGTGCACTGTCTGGTCCACCATTTTTATGATGAGCCGGCTATCTTCGGGCGAAACTCTTTTGGTTCATGGGGGTTCCAGCGGAATCGGTACGTTTGCTATTCAGATTGCTAAATACCGGGGAGTAAGGGTATTTGTCACAGCAGGTAGTGAGGAAAAGTTAGCAGCTTGTAAGGAGCTTGGGGCTGACGTAGGTATCAATTACAAGACGGAGGACTTTGTTACACGGGTAAAGGAAGAGAGACAGGCGGCAAAGGTTTGTGTTGAAGTCATCTTGGATAGCATTGGGCAAGCCTATTTTAAACGTAACCTTGACAGCTTAGCTTTTGATGGGAGGCTTTTTGTCATTGGGACCCTGAGTGGCGCTGTCTCAGAAATAGATCTTCGTATGGTGCTTTCAAAGCGCCTCACCATCCAAGCGGCTGGTTTGCGATTCAGAAGTCCAGAAAACAAAGCAGTAATTGTTAGAGAGGTGGAGGAGAACGTGTGGCCTGCAATTGTGGCTGGCAAGGTGAAAACTGTTGTCTACAAGCGTTTCCCATTATCTGAAGCCGCTGAGGCTCACCAGCTATTGGAAACTAGCCAGCATATTGGAAAGATACTACTTTTTCCGTGA

Protein Analysis

327

Amino Acids

35.29

Weight (kDa)

6.55

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 27 - 109 2.1e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 151 - 265 1.6e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 183 - 325 9.3e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 940
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 894
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 7 cut(s) 30, 111, 305, 450, 617, 788, 921
AcuI CTGAAG 1 cut(s) 936
AcvI CACGTG 1 cut(s) 226
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 3 cut(s) 51, 152, 460
AfiI CCNNNNNNNGG 2 cut(s) 164, 940
AflIII ACRYGT 3 cut(s) 223, 225, 852
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 343, 635, 768
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 2 cut(s) 180, 328
AluBI AGCT 6 cut(s) 357, 536, 547, 687, 692, 937
AluI AGCT 6 cut(s) 357, 536, 547, 687, 692, 937
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 604, 742
Alw44I GTGCAC 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 3 cut(s) 105, 210, 857
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 350, 533
AsiGI ACCGGT 1 cut(s) 319
AspLEI GCGC 2 cut(s) 734, 774
AspS9I GGNCC 5 cut(s) 32, 40, 168, 384, 720
AsuC2I CCSGG 3 cut(s) 27, 165, 488
AsuHPI GGTGA 4 cut(s) 257, 769, 892, 923
AvaII GGWCC 5 cut(s) 32, 40, 168, 384, 720
BaeGI GKGCMC 1 cut(s) 377
BaeI ACNNNNGTAYC 2 cut(s) 547, 580
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 924
BbvI GCAGC 2 cut(s) 337, 545
BccI CCATC 4 cut(s) 212, 228, 692, 788
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 182, 330
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 3 cut(s) 27, 165, 488
BcoDI GTCTC 2 cut(s) 604, 742
BfaI CTAG 1 cut(s) 948
BfoI RGCGCY 2 cut(s) 735, 775
BfuAI ACCTGC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 926
BglII AGATCT 1 cut(s) 748
BisI GCNGC 5 cut(s) 351, 534, 618, 789, 921
BlpI GCTNAGC 1 cut(s) 688
BlsI GCNGC 5 cut(s) 352, 535, 619, 790, 922
Bme1390I CCNGG 5 cut(s) 27, 165, 182, 330, 488
Bme18I GGWCC 5 cut(s) 32, 40, 168, 384, 720
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 5 cut(s) 32, 40, 168, 384, 720
BmiI GGNNCC 6 cut(s) 169, 202, 324, 445, 721, 722
BmrFI CCNGG 5 cut(s) 27, 165, 182, 330, 488
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 924
Bpu1102I GCTNAGC 1 cut(s) 688
BpuMI CCSGG 3 cut(s) 27, 165, 488
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BsaWI WCCGGW 3 cut(s) 34, 319, 361
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 483, 513, 839, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 940
Bse118I RCCGGY 2 cut(s) 319, 405
Bse1I ACTGG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 2 cut(s) 182, 330
BseDI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BseGI GGATG 2 cut(s) 352, 780
BseLI CCNNNNNNNGG 2 cut(s) 164, 940
BseMII CTCAG 4 cut(s) 276, 716, 753, 915
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 288, 860
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 337, 545
BshFI GGCC 3 cut(s) 107, 212, 859
BshTI ACCGGT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
BslFI GGGAC 3 cut(s) 159, 321, 733
BslI CCNNNNNNNGG 2 cut(s) 164, 940
BsmAI GTCTC 2 cut(s) 604, 742
BsmFI GGGAC 3 cut(s) 159, 321, 733
BsnI GGCC 3 cut(s) 107, 212, 859
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 247, 748
Bsp1720I GCTNAGC 1 cut(s) 688
BspACI CCGC 7 cut(s) 30, 111, 305, 450, 617, 788, 921
BspANI GGCC 3 cut(s) 107, 212, 859
BspCNI CTCAG 4 cut(s) 277, 717, 752, 916
BspEI TCCGGA 1 cut(s) 361
BspLI GGNNCC 6 cut(s) 169, 202, 324, 445, 721, 722
BspMI ACCTGC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 319, 405
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 2 cut(s) 319, 405
BssECI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BssMI GATC 2 cut(s) 247, 748
BssNI GRCGYC 1 cut(s) 186
Bst2UI CCWGG 2 cut(s) 182, 330
Bst4CI ACNGT 3 cut(s) 150, 379, 889
Bst6I CTCTTC 1 cut(s) 600
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 7 cut(s) 355, 373, 407, 660, 861, 874, 953
BstDEI CTNAG 5 cut(s) 285, 688, 725, 739, 924
BstF5I GGATG 2 cut(s) 352, 780
BstH2I RGCGCY 2 cut(s) 735, 775
BstHHI GCGC 2 cut(s) 734, 774
BstKTI GATC 2 cut(s) 250, 751
BstMAI GTCTC 2 cut(s) 604, 742
BstMBI GATC 2 cut(s) 247, 748
BstMWI GCNNNNNNNGC 4 cut(s) 302, 769, 869, 926
BstNI CCWGG 2 cut(s) 182, 330
BstSCI CCNGG 5 cut(s) 25, 163, 180, 328, 486
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 337, 545
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 2 cut(s) 791, 959
BstYI RGATCY 1 cut(s) 748
BsuRI GGCC 3 cut(s) 107, 212, 859
BtsCI GGATG 2 cut(s) 352, 780
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 7 cut(s) 355, 373, 407, 660, 861, 874, 953
CfoI GCGC 2 cut(s) 734, 774
Cfr10I RCCGGY 2 cut(s) 319, 405
Cfr13I GGNCC 5 cut(s) 32, 40, 168, 384, 720
CpoI CGGWCCG 1 cut(s) 32
CseI GACGC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 50, 151, 459
CspAI ACCGGT 1 cut(s) 319
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 1 cut(s) 437
CviQI GTAC 3 cut(s) 50, 151, 459
DdeI CTNAG 5 cut(s) 285, 688, 725, 739, 924
DpnI GATC 2 cut(s) 249, 750
DpnII GATC 2 cut(s) 247, 748
DraI TTTAAA 1 cut(s) 670
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 600
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 45
Eco47I GGWCC 5 cut(s) 32, 40, 168, 384, 720
Eco57I CTGAAG 1 cut(s) 936
Eco72I CACGTG 1 cut(s) 226
EcoO109I RGGNCCY 2 cut(s) 40, 720
EcoRII CCWGG 2 cut(s) 180, 328
FaeI CATG 1 cut(s) 440
FaiI YATR 5 cut(s) 282, 398, 438, 758, 957
FaqI GGGAC 3 cut(s) 159, 321, 733
FatI CATG 1 cut(s) 436
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 894
Fnu4HI GCNGC 5 cut(s) 351, 534, 618, 789, 921
FokI GGATG 2 cut(s) 359, 767
Fsp4HI GCNGC 5 cut(s) 351, 534, 618, 789, 921
FspBI CTAG 1 cut(s) 948
GlaI GCGC 2 cut(s) 733, 773
GluI GCNGC 5 cut(s) 351, 534, 618, 789, 921
HaeII RGCGCY 2 cut(s) 735, 775
HaeIII GGCC 3 cut(s) 107, 212, 859
HapII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HgaI GACGC 1 cut(s) 175
HhaI GCGC 2 cut(s) 734, 774
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 440
Hin6I GCGC 2 cut(s) 732, 772
HinP1I GCGC 2 cut(s) 732, 772
HinfI GANTC 2 cut(s) 453, 801
HpaII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HphI GGTGA 4 cut(s) 257, 769, 892, 923
Hpy166II GTNNAC 3 cut(s) 375, 387, 895
Hpy188I TCNGA 7 cut(s) 47, 117, 138, 474, 742, 806, 916
Hpy188III TCNNGA 5 cut(s) 198, 217, 231, 362, 812
Hpy8I GTNNAC 3 cut(s) 375, 387, 895
Hpy99I CGWCG 3 cut(s) 86, 191, 218
HpyAV CCTTC 3 cut(s) 136, 283, 337
HpyCH4III ACNGT 3 cut(s) 150, 379, 889
HpyCH4IV ACGT 6 cut(s) 225, 240, 461, 558, 673, 852
HpyCH4V TGCA 2 cut(s) 375, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 769, 869, 926
HpyF3I CTNAG 5 cut(s) 285, 688, 725, 739, 924
HpySE526I ACGT 6 cut(s) 225, 240, 461, 558, 673, 852
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 440
HspAI GCGC 2 cut(s) 732, 772
KflI GGGWCCC 1 cut(s) 720
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 748
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 337, 545
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 948
MaeII ACGT 6 cut(s) 225, 240, 461, 558, 673, 852
MaeIII GTNAC 5 cut(s) 16, 173, 505, 589, 674
MalI GATC 2 cut(s) 249, 750
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 247, 748
MboII GAAGA 4 cut(s) 74, 405, 617, 743
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 3 cut(s) 568, 828, 864
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 2 cut(s) 267, 669
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 450, 923
MspI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
MspR9I CCNGG 5 cut(s) 27, 165, 182, 330, 488
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 2 cut(s) 182, 330
MwoI GCNNNNNNNGC 4 cut(s) 302, 769, 869, 926
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 3 cut(s) 27, 165, 488
NdeII GATC 2 cut(s) 247, 748
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 6 cut(s) 169, 202, 324, 445, 721, 722
NmuCI GTSAC 2 cut(s) 173, 505
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 453, 801
PflMI CCANNNNNTGG 1 cut(s) 940
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 5 cut(s) 352, 535, 619, 790, 922
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 2 cut(s) 40, 720
Psp5II RGGWCCY 2 cut(s) 40, 720
Psp6I CCWGG 2 cut(s) 180, 328
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 2 cut(s) 180, 328
PspN4I GGNNCC 6 cut(s) 169, 202, 324, 445, 721, 722
PspPI GGNCC 5 cut(s) 32, 40, 168, 384, 720
PspPPI RGGWCCY 2 cut(s) 40, 720
PsuI RGATCY 1 cut(s) 748
RsaI GTAC 3 cut(s) 51, 152, 460
RsaNI GTAC 3 cut(s) 50, 151, 459
RseI CAYNNNNRTG 1 cut(s) 395
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 267, 669
SatI GCNGC 5 cut(s) 351, 534, 618, 789, 921
Sau3AI GATC 2 cut(s) 247, 748
Sau96I GGNCC 5 cut(s) 32, 40, 168, 384, 720
ScrFI CCNGG 5 cut(s) 27, 165, 182, 330, 488
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 5 cut(s) 32, 40, 168, 384, 720
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 3 cut(s) 568, 828, 864
SsiI CCGC 7 cut(s) 30, 111, 305, 450, 617, 788, 921
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 5 cut(s) 25, 163, 180, 328, 486
TaaI ACNGT 3 cut(s) 150, 379, 889
TaiI ACGT 6 cut(s) 228, 243, 464, 561, 676, 855
TaqI TCGA 3 cut(s) 102, 189, 207
TasI AATT 3 cut(s) 568, 828, 864
TatI WGTACW 1 cut(s) 49
TauI GCSGC 3 cut(s) 620, 791, 923
TfiI GAWTC 2 cut(s) 453, 801
Tru1I TTAA 2 cut(s) 267, 669
Tru9I TTAA 2 cut(s) 267, 669
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 173, 505
TseI GCWGC 2 cut(s) 350, 533
Tsp45I GTSAC 2 cut(s) 173, 505
TspDTI ATGAA 2 cut(s) 17, 425
TspGWI ACGGA 2 cut(s) 593, 969
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 940
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 5 cut(s) 32, 40, 168, 384, 720
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 894
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.