Rh5BG129800

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000394
Physical Location & Seq
Forward (+)
12765163 .. 12765899
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG129800.1

Sequence Viewer

Length: 633 bp
ATGCTCGGGAAACTGGGATATGGGGGGAAGTCCCTGCAGCCTTCCAAGGGATCACGGAAAGAGAGTGAGAGAGGGAAAGGTGGCGGTGCTGATCAGTCCACCGAGGAACAACGTCCGGCAGTGGAGGTGACTAAGTTCATGTACATCGTCGTTACTACTACCGAAGGTCTACCAGAGGTTCTCCAGGTACATCTTGTGCCTAAACCCAAACTGGAGGCGAATGAGGTGCTCGTGAAAGTGGACTACGCCTGTGTGAACCGACCAGACATCCACCAGAGGAGTGTTGCATATCCACCCAACATTCCGGGTAGAAGTGCCTATCTCGGACTCGAATGTTCAGGAACCATCGTTGAGCATGGGAAGGAGATGTCCGAGAAAGACAAGAAAGTCTGGAAACCAGGCACCAAGGTGTGTGCTATTACCAACGGAGGAAGCTATGCGCAGTTCGTGGCAGTTCCAGTTGCACAGTTGCTTCCTATTCCAAGACATACTAGTGTAAAGGACGCTGCTACTTTTCCTCAAGCTGCCTGCACCGTATGGTCAGAGCTGTTTATGAACAAAGGCTATCTGAGGCGCTGGTGCAATATGAGAAAAAGGGGGCTCGGCTTTCTTCCGGTGAAACACTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

210

Amino Acids

23.21

Weight (kDa)

9.49

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 73 - 161 4.6e-12 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
Acc16I TGCGCA 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 169
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 58
AfaI GTAC 2 cut(s) 143, 189
AfiI CCNNNNNNNGG 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 183, 397
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 3 cut(s) 435, 524, 547
AluI AGCT 3 cut(s) 435, 524, 547
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 5
ApeKI GCWGC 3 cut(s) 37, 506, 524
AspLEI GCGC 2 cut(s) 442, 576
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 139, 628
AvaI CYCGRG 1 cut(s) 5
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 603
BauI CACGAG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 49, 493, 511
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 185, 399
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 306
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 577
BisI GCNGC 3 cut(s) 38, 507, 525
BlsI GCNGC 3 cut(s) 39, 508, 526
Bme1390I CCNGG 3 cut(s) 185, 306, 399
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 343, 403
BmrFI CCNGG 3 cut(s) 185, 306, 399
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpmI CTGGAG 2 cut(s) 167, 233
BpuEI CTTGAG 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 45, 102, 405
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 18, 216, 458
BseBI CCWGG 2 cut(s) 185, 399
BseDI CCNNGG 3 cut(s) 45, 102, 405
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 3 cut(s) 18, 216, 458
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 3 cut(s) 49, 493, 511
BsgI GTGCAG 1 cut(s) 514
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 3 cut(s) 116, 305, 614
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 231, 603
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 50, 91
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 343, 403
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 3 cut(s) 18, 216, 458
BssECI CCNNGG 3 cut(s) 45, 102, 405
BssMI GATC 2 cut(s) 50, 91
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 2 cut(s) 45, 405
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 185, 399
Bst4CI ACNGT 2 cut(s) 468, 535
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 132, 569
BstF5I GGATG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 2 cut(s) 442, 576
BstKTI GATC 2 cut(s) 53, 94
BstMBI GATC 2 cut(s) 50, 91
BstNI CCWGG 2 cut(s) 185, 399
BstSCI CCNGG 3 cut(s) 183, 304, 397
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 49, 493, 511
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 529
CfoI GCGC 2 cut(s) 442, 576
CseI GACGC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 142, 188
CviAII CATG 2 cut(s) 139, 356
CviJI RGCY 7 cut(s) 40, 435, 524, 547, 564, 601, 606
CviKI_1 RGCY 7 cut(s) 40, 435, 524, 547, 564, 601, 606
CviQI GTAC 2 cut(s) 142, 188
DdeI CTNAG 2 cut(s) 132, 569
DpnI GATC 2 cut(s) 52, 93
DpnII GATC 2 cut(s) 50, 91
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 45, 405
Eco24I GRGCYC 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 183, 397
EcoT14I CCWWGG 2 cut(s) 45, 405
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 45, 405
FaeI CATG 2 cut(s) 142, 359
FaiI YATR 9 cut(s) 21, 140, 289, 357, 438, 489, 538, 554, 587
FaqI GGGAC 1 cut(s) 16
FatI CATG 2 cut(s) 138, 355
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 38, 507, 525
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 3 cut(s) 38, 507, 525
FspBI CTAG 1 cut(s) 492
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 2 cut(s) 441, 575
GluI GCNGC 3 cut(s) 38, 507, 525
GsuI CTGGAG 2 cut(s) 167, 233
HaeII RGCGCY 1 cut(s) 577
HapII CCGG 3 cut(s) 116, 305, 614
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 442, 576
Hin1II CATG 2 cut(s) 142, 359
Hin6I GCGC 2 cut(s) 440, 574
HinP1I GCGC 2 cut(s) 440, 574
HinfI GANTC 1 cut(s) 327
HpaII CCGG 3 cut(s) 116, 305, 614
HphI GGTGA 2 cut(s) 139, 628
Hpy166II GTNNAC 4 cut(s) 99, 170, 241, 256
Hpy188I TCNGA 4 cut(s) 326, 373, 544, 570
Hpy188III TCNNGA 4 cut(s) 7, 232, 339, 391
Hpy8I GTNNAC 4 cut(s) 99, 170, 241, 256
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 51, 158, 355
HpyCH4III ACNGT 2 cut(s) 468, 535
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 5 cut(s) 37, 287, 464, 531, 582
HpyF3I CTNAG 2 cut(s) 132, 569
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 2 cut(s) 142, 359
HspAI GCGC 2 cut(s) 440, 574
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 2 cut(s) 50, 91
Lsp1109I GCAGC 3 cut(s) 49, 493, 511
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 127, 151
MalI GATC 2 cut(s) 52, 93
MboI GATC 2 cut(s) 50, 91
MboII GAAGA 1 cut(s) 602
MhlI GDGCHC 2 cut(s) 231, 603
MlyI GAGTC 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 407, 492
MspI CCGG 3 cut(s) 116, 305, 614
MspR9I CCNGG 3 cut(s) 185, 306, 399
MvaI CCWGG 2 cut(s) 185, 399
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 50, 91
NlaIII CATG 2 cut(s) 142, 359
NlaIV GGNNCC 2 cut(s) 343, 403
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 127
NsbI TGCGCA 1 cut(s) 441
OliI CACNNNNGTG 1 cut(s) 407
PkrI GCNGC 3 cut(s) 39, 508, 526
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 183, 397
PspGI CCWGG 2 cut(s) 183, 397
PspN4I GGNNCC 2 cut(s) 343, 403
PstI CTGCAG 1 cut(s) 39
RsaI GTAC 2 cut(s) 143, 189
RsaNI GTAC 2 cut(s) 142, 188
RseI CAYNNNNRTG 2 cut(s) 407, 492
SatI GCNGC 3 cut(s) 38, 507, 525
Sau3AI GATC 2 cut(s) 50, 91
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 3 cut(s) 185, 306, 399
SduI GDGCHC 2 cut(s) 231, 603
SfcI CTRYAG 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 407, 492
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
SpeI ACTAGT 1 cut(s) 491
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 183, 304, 397
StyI CCWWGG 2 cut(s) 45, 405
TaaI ACNGT 2 cut(s) 468, 535
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 330
TatI WGTACW 1 cut(s) 141
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 37, 506, 524
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 127, 569
TspGWI ACGGA 2 cut(s) 70, 441
TspRI CASTG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.