Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

4200851 .. 4211812

Gene Structure 10962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG049800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGGCGGTAGTGGTAACAACCCCCGGCGGACCGGAGGTCCTCCGAGTACAAGAAGTTGAAGACCCAGTAATCAAAGACGACGAGGTTCTTGTCAAAGTCGAGGCCACCGCGCTGAACCGAGCCGACACTTTTCAGAGGAAGGGACTGTACCCACCACCTCCGGGGTCCAGTCAGTACCTCGGCCTCGAATGTTCTGGAACCATCGAGGCCGTCGGGAAACACGTGTCGAGATGGAAAGTGGGCGATCAGAGGAATTGGTCATTTTTGGATGTAAAAGGAGTAATTGTTCAACACTGGTTTACATATTATTACAAAATTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

108

Amino Acids

12.19

Weight (kDa)

7.84

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 84	1.6e-13	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	8, 30, 111
AcsI	RAATTY	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	226
AfaI	GTAC	3 cut(s)	51, 152, 179
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	2 cut(s)	223, 225
AgsI	TTSAA	2 cut(s)	62, 293
AhdI	GACNNNNNGTC	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AoxI	GGCC	3 cut(s)	105, 184, 210
ApoI	RAATTY	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	32, 40, 168
AsuC2I	CCSGG	2 cut(s)	27, 165
AvaII	GGWCC	3 cut(s)	32, 40, 168
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	2 cut(s)	212, 228
BceAI	ACGGC	1 cut(s)	197
BcnI	CCSGG	2 cut(s)	27, 165
Bme1390I	CCNGG	2 cut(s)	27, 165
Bme18I	GGWCC	3 cut(s)	32, 40, 168
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	32, 40, 168
BmiI	GGNNCC	2 cut(s)	169, 202
BmrFI	CCNGG	2 cut(s)	27, 165
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	27, 165
BsaAI	YACGTR	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	25, 164, 181
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	68, 171, 302
BseDI	CCNNGG	3 cut(s)	25, 164, 181
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	3 cut(s)	68, 171, 302
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	107, 186, 212
BsiSI	CCGG	3 cut(s)	27, 35, 164
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	107, 186, 212
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	3 cut(s)	8, 30, 111
BspANI	GGCC	3 cut(s)	107, 186, 212
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	169, 202
BsrI	ACTGG	3 cut(s)	68, 171, 302
BssECI	CCNNGG	3 cut(s)	25, 164, 181
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	25, 163
BstUI	CGCG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	107, 186, 212
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	295
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	32, 40, 168
CpoI	CGGWCCG	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	50, 151, 178
CspI	CGGWCCG	1 cut(s)	32
CviJI	RGCY	4 cut(s)	107, 125, 186, 212
CviKI_1	RGCY	4 cut(s)	107, 125, 186, 212
CviQI	GTAC	3 cut(s)	50, 151, 178
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	45
Eco47I	GGWCC	3 cut(s)	32, 40, 168
Eco72I	CACGTG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	40
FaiI	YATR	1 cut(s)	307
FaqI	GGGAC	1 cut(s)	159
FokI	GGATG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	107, 186, 212
HapII	CCGG	3 cut(s)	27, 35, 164
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HpaII	CCGG	3 cut(s)	27, 35, 164
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	47, 138, 252
Hpy188III	TCNNGA	3 cut(s)	198, 217, 231
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	2 cut(s)	86, 218
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	225
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	7 cut(s)	40, 48, 81, 177, 183, 184, 283
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	3 cut(s)	256, 285, 318
MspI	CCGG	3 cut(s)	27, 35, 164
MspR9I	CCNGG	2 cut(s)	27, 165
MvnI	CGCG	1 cut(s)	113
NciI	CCSGG	2 cut(s)	27, 165
NdeII	GATC	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	169, 202
NmeAIII	GCCGAG	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	169, 202
PspPI	GGNCC	3 cut(s)	32, 40, 168
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	3 cut(s)	51, 152, 179
RsaNI	GTAC	3 cut(s)	50, 151, 178
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	32, 40, 168
ScrFI	CCNGG	2 cut(s)	27, 165
SetI	ASST	5 cut(s)	42, 90, 163, 183, 228
SinI	GGWCC	3 cut(s)	32, 40, 168
Sse9I	AATT	3 cut(s)	256, 285, 318
SsiI	CCGC	3 cut(s)	8, 30, 111
StyD4I	CCNGG	2 cut(s)	25, 163
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	4 cut(s)	102, 189, 207, 230
TasI	AATT	3 cut(s)	256, 285, 318
TatI	WGTACW	1 cut(s)	49
TscAI	CASTG	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	32, 40, 168
XapI	RAATTY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.