Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001886.1

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

46247 .. 46611

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001886.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgatgccagaacgagatattgtgtcctggaatacggtgattgcagggatgtatgaacaggctttagcaaggatgttattaaagggaaaggagattcatgtgtatgccgtaagacatggatttgatgcagatgtgctgattggcagtagcttgattgacatgtatgcaaactctacccatacggacgactctctgaaagtgttcaacctgctacatcggcgtgattccatttcatggaactcgattattggagggtatgtgcagaatggtatgtttgatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

94

Amino Acids

10.61

Weight (kDa)

5.67

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	49
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	54, 78
BseLI	CCNNNNNNNGG	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	54, 78
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	54, 78
BveI	ACCTGC	1 cut(s)	216
CviAII	CATG	4 cut(s)	98, 116, 160, 234
CviJI	RGCY	3 cut(s)	62, 150, 282
CviKI_1	RGCY	3 cut(s)	62, 150, 282
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	4 cut(s)	101, 119, 163, 237
FatI	CATG	4 cut(s)	97, 115, 159, 233
FokI	GGATG	2 cut(s)	61, 85
Hin1II	CATG	4 cut(s)	101, 119, 163, 237
HinfI	GANTC	3 cut(s)	94, 188, 224
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	44, 128, 167, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	101, 119, 163, 237
LpnPI	CCDG	6 cut(s)	13, 21, 30, 40, 44, 221
LweI	GCATC	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	2 cut(s)	102, 219
MspR9I	CCNGG	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	101, 119, 163, 237
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	94, 224
PflMI	CCANNNNNTGG	1 cut(s)	234
PfoI	TCCNGGA	1 cut(s)	26
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PscI	ACATGT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
RseI	CAYNNNNRTG	2 cut(s)	102, 219
SaqAI	TTAA	1 cut(s)	80
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	2 cut(s)	152, 210
SfaNI	GCATC	1 cut(s)	115
SmiMI	CAYNNNNRTG	2 cut(s)	102, 219
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	94, 224
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	69, 86, 222
TspGWI	ACGGA	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	234
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.