Rh5DG026200

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000394
Physical Location & Seq
Reverse (-)
1817343 .. 1820412
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG026200.1

Sequence Viewer

Length: 678 bp
ATGCACAAGCTCCGCGGATCTAGCTCTCGCAAGTCAGAATCTTCTGGGAATAAGTGGTATTCCAAGAGAGGGAAAGGTGGTAATGATAACGAGGCGACTCAGAGAGACGAGGAAACGCCAGAGGTGACCCAGTTTATGTTTGCCGTTGTCACTACGACTGAAGGTAAAGCGGATGTCCTCCAAGTACGTCGTGTGCCAAAGCCGAAACCCAAAGCGGGCGAGATGCTCGTAAAAGTGTCCCACGCGGGGGTGAATCGACCGGACATCCACCAGAGGGAGACGGAGTTACCACCCTGGGAAGGAAGCAGCGACGGAGGAAGCAACAGAAGAAGCGACTATCTCGGACTTGAGTGTTCTGGAACCATCAGTGAGTATGGGGTGGGCATGTCCGCAAAAGACAAGAAAGCCTGGAAAATAGGCGACAAGGTGTGTGCTATTACCAACGGAGGAAGCTATGCGCAGTACGTCGTTGTTCCAGTTGCACAATTGCTTCCTAGTCCATCTAATAGTCTAAAGGAGGCTGCCACATTTCCTCAAGCTGCTTGTACTGTATGGTCAGAGTTGTTTATGGAGGAAAGGCTATCTGATGCGCTGCAGGAGTATGAGAAAAAAGGGGCTCGTCTTTCTTCTGGTGAAACACTTTTGGTGAGAAATCAACTTCCATATATAGTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

225

Amino Acids

24.7

Weight (kDa)

8.66

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 72 - 167 5.8e-11 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
AccII CGCG 2 cut(s) 15, 245
AciI CCGC 6 cut(s) 13, 15, 170, 215, 245, 390
AclWI GGATC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 4 cut(s) 186, 464, 547, 672
AfiI CCNNNNNNNGG 6 cut(s) 69, 215, 246, 247, 274, 299
AjnI CCWGG 2 cut(s) 293, 407
AluBI AGCT 4 cut(s) 10, 24, 453, 539
AluI AGCT 4 cut(s) 10, 24, 453, 539
Alw26I GTCTC 2 cut(s) 99, 272
AlwI GGATC 1 cut(s) 25
ApeKI GCWGC 4 cut(s) 306, 521, 539, 592
AspLEI GCGC 2 cut(s) 460, 592
AsuHPI GGTGA 4 cut(s) 136, 262, 644, 658
BanII GRGCYC 1 cut(s) 619
BbvI GCAGC 4 cut(s) 318, 508, 526, 579
BccI CCATC 2 cut(s) 371, 508
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 295, 409
BcoDI GTCTC 2 cut(s) 99, 272
BfaI CTAG 3 cut(s) 21, 495, 676
BfmI CTRYAG 1 cut(s) 593
BisI GCNGC 4 cut(s) 307, 522, 540, 593
BlsI GCNGC 4 cut(s) 308, 523, 541, 594
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 2 cut(s) 295, 409
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 295, 409
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 213, 577
BmuI ACTGGG 1 cut(s) 124
BpuEI CTTGAG 2 cut(s) 368, 519
BsaJI CCNNGG 3 cut(s) 13, 293, 294
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 215, 246, 247, 274, 299
Bse1I ACTGG 2 cut(s) 130, 476
BseBI CCWGG 2 cut(s) 295, 409
BseDI CCNNGG 3 cut(s) 13, 293, 294
BseGI GGATG 2 cut(s) 178, 264
BseLI CCNNNNNNNGG 6 cut(s) 69, 215, 246, 247, 274, 299
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 130, 476
BseXI GCAGC 4 cut(s) 318, 508, 526, 579
Bsh1236I CGCG 2 cut(s) 15, 245
Bsh1285I CGRYCG 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 6 cut(s) 69, 215, 246, 247, 274, 299
BsmAI GTCTC 2 cut(s) 99, 272
BsmBI CGTCTC 2 cut(s) 99, 272
BsmFI GGGAC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 6 cut(s) 13, 15, 170, 215, 245, 390
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 2 cut(s) 15, 245
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 597
BspPI GGATC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 130, 476
BssECI CCNNGG 3 cut(s) 13, 293, 294
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 295, 409
Bst4CI ACNGT 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 178, 264
BstFNI CGCG 2 cut(s) 15, 245
BstHHI GCGC 2 cut(s) 460, 592
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 2 cut(s) 99, 272
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 2 cut(s) 295, 409
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 293, 407
BstSFI CTRYAG 1 cut(s) 593
BstUI CGCG 2 cut(s) 15, 245
BstV1I GCAGC 4 cut(s) 318, 508, 526, 579
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 178, 264
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 2 cut(s) 460, 592
Cfr42I CCGCGG 1 cut(s) 16
Csp6I GTAC 4 cut(s) 185, 463, 546, 671
CviAII CATG 1 cut(s) 385
CviJI RGCY 9 cut(s) 10, 24, 202, 407, 453, 521, 539, 580, 617
CviKI_1 RGCY 9 cut(s) 10, 24, 202, 407, 453, 521, 539, 580, 617
CviQI GTAC 4 cut(s) 185, 463, 546, 671
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 293, 407
EcoT38I GRGCYC 1 cut(s) 619
Esp3I CGTCTC 2 cut(s) 99, 272
FaeI CATG 1 cut(s) 388
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 384
FauI CCCGC 2 cut(s) 208, 238
Fnu4HI GCNGC 4 cut(s) 307, 522, 540, 593
FokI GGATG 2 cut(s) 185, 251
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 4 cut(s) 307, 522, 540, 593
FspBI CTAG 3 cut(s) 21, 495, 676
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 2 cut(s) 459, 591
GluI GCNGC 4 cut(s) 307, 522, 540, 593
HapII CCGG 1 cut(s) 260
HhaI GCGC 2 cut(s) 460, 592
Hin1II CATG 1 cut(s) 388
Hin6I GCGC 2 cut(s) 458, 590
HinP1I GCGC 2 cut(s) 458, 590
HinfI GANTC 3 cut(s) 38, 97, 253
HpaII CCGG 1 cut(s) 260
HphI GGTGA 4 cut(s) 136, 262, 644, 658
Hpy188I TCNGA 5 cut(s) 37, 102, 344, 559, 586
Hpy188III TCNNGA 1 cut(s) 357
Hpy99I CGWCG 3 cut(s) 192, 314, 470
HpyAV CCTTC 2 cut(s) 155, 293
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 2 cut(s) 187, 465
HpyCH4V TGCA 3 cut(s) 4, 482, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 187, 465
Hsp92II CATG 1 cut(s) 388
HspAI GCGC 2 cut(s) 458, 590
KspI CCGCGG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 4 cut(s) 318, 508, 526, 579
LweI GCATC 2 cut(s) 213, 577
MaeI CTAG 3 cut(s) 21, 495, 676
MaeII ACGT 2 cut(s) 187, 465
MaeIII GTNAC 3 cut(s) 124, 148, 285
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 33, 339, 618
MfeI CAATTG 1 cut(s) 485
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 1 cut(s) 485
MlyI GAGTC 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 295, 409
MunI CAATTG 1 cut(s) 485
MvaI CCWGG 2 cut(s) 295, 409
MvnI CGCG 2 cut(s) 15, 245
MwoI GCNNNNNNNGC 1 cut(s) 21
NdeII GATC 1 cut(s) 17
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 124, 148
NsbI TGCGCA 1 cut(s) 459
NspI RCATGY 1 cut(s) 388
PasI CCCWGGG 1 cut(s) 294
PfeI GAWTC 2 cut(s) 38, 253
PkrI GCNGC 4 cut(s) 308, 523, 541, 594
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 293, 407
PspEI GGTNACC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 293, 407
PspN4I GGNNCC 1 cut(s) 361
PstI CTGCAG 1 cut(s) 597
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 4 cut(s) 186, 464, 547, 672
RsaNI GTAC 4 cut(s) 185, 463, 546, 671
SacII CCGCGG 1 cut(s) 16
SatI GCNGC 4 cut(s) 307, 522, 540, 593
Sau3AI GATC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 672
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 295, 409
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 2 cut(s) 213, 577
SfcI CTRYAG 1 cut(s) 593
Sfr303I CCGCGG 1 cut(s) 16
SgrBI CCGCGG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 347, 534
SmoI CTYRAG 2 cut(s) 347, 534
Sse9I AATT 1 cut(s) 485
SsiI CCGC 6 cut(s) 13, 15, 170, 215, 245, 390
SspMI CTAG 3 cut(s) 21, 495, 676
StyD4I CCNGG 2 cut(s) 293, 407
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 2 cut(s) 190, 468
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 485
TatI WGTACW 2 cut(s) 545, 670
TfiI GAWTC 2 cut(s) 38, 253
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 124, 148
TseI GCWGC 4 cut(s) 306, 521, 539, 592
Tsp45I GTSAC 2 cut(s) 124, 148
TspGWI ACGGA 3 cut(s) 296, 327, 459
TspRI CASTG 1 cut(s) 373
XceI RCATGY 1 cut(s) 388
XspI CTAG 3 cut(s) 21, 495, 676
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.