Rh5CG029400

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000394
Physical Location & Seq
Reverse (-)
1844936 .. 1846538
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG029400.1

Sequence Viewer

Length: 507 bp
ATGGCTAAACACCAGGGGGTGACTGTATTTGTCACTGCAGGTAGTGATGAAAAATTAGAAGCTTGTAGGAAGCTTGGAGCTAGTGTATGCATCAATTATCGTAAAGAGGCCTTTGAGAAAAGGGTACTGATGGAAACAGAAGGCAAAGGTGTGAATGTTATCTTGGATTGCCTTGGGGAGGAGTATTTTCAGCAAAACTGTTCTTGCTTAAGTAGTTCTGGGGGTAGGCTGGTCACCATTGGTCCTAACTGTAATAAGTTTGGACAAGATTCTCACAAAGAAAGTTTGGGGCGCCACATTGTCAATGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAAGCCTTAATTGTTAAGAAGGTGCTGAAGCATGTTTGGCCTGCAATAAGGAATGGCCGTGTGAGAGCTTCCAATATCAAGACTTTCACCTTCAAGCAAGCAGCAGAGGCCCATGCACTCATGGAGTCTGACTTATTCCAGGGACATTACTCTGATGGAACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

168

Amino Acids

18.6

Weight (kDa)

9.23

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 1 - 81 4e-20 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 25 - 156 1.3e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 291
AciI CCGC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 178
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 2 cut(s) 12, 477
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 4 cut(s) 62, 73, 80, 407
AluI AGCT 4 cut(s) 62, 73, 80, 407
AoxI GGCC 4 cut(s) 108, 377, 394, 447
ApeKI GCWGC 1 cut(s) 440
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 242, 448
AsuHPI GGTGA 3 cut(s) 31, 226, 418
AvaII GGWCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 452
BccI CCATC 2 cut(s) 124, 488
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 2 cut(s) 14, 479
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 14, 479
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 242, 448
BmiI GGNNCC 2 cut(s) 293, 499
BmrFI CCNGG 2 cut(s) 14, 479
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 13, 172, 478
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 14, 479
BseDI CCNNGG 3 cut(s) 13, 172, 478
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 452
BshFI GGCC 4 cut(s) 110, 379, 396, 449
BshNI GGYRCC 1 cut(s) 291
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 495
BsnI GGCC 4 cut(s) 110, 379, 396, 449
BspACI CCGC 1 cut(s) 319
BspANI GGCC 4 cut(s) 110, 379, 396, 449
BspLI GGNNCC 2 cut(s) 293, 499
BspMAI CTGCAG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 13, 172, 478
BssNI GRCGYC 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 14, 479
Bst4CI ACNGT 3 cut(s) 25, 200, 251
BstACI GRCGYC 1 cut(s) 292
BstAFI CTTAAG 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 381, 438
BstEII GGTNACC 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 376, 446
BstNI CCWGG 2 cut(s) 14, 479
BstNSI RCATGY 1 cut(s) 374
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 2 cut(s) 12, 477
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 452
BsuRI GGCC 4 cut(s) 110, 379, 396, 449
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 381, 438
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 242, 448
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 371, 452, 460
CviQI GTAC 1 cut(s) 125
DinI GGCGCC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 386
Eco91I GGTNACC 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 12, 477
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 293
EheI GGCGCC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 374, 455, 463
FaiI YATR 4 cut(s) 88, 372, 453, 461
FaqI GGGAC 1 cut(s) 495
FatI CATG 3 cut(s) 370, 451, 459
Fnu4HI GCNGC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 4 cut(s) 110, 379, 396, 449
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 3 cut(s) 374, 455, 463
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 60, 71
HinfI GANTC 2 cut(s) 269, 464
HphI GGTGA 3 cut(s) 31, 226, 418
Hpy188I TCNGA 2 cut(s) 469, 493
Hpy188III TCNNGA 2 cut(s) 332, 418
HpyAV CCTTC 3 cut(s) 134, 352, 439
HpyCH4III ACNGT 3 cut(s) 25, 200, 251
HpyCH4V TGCA 5 cut(s) 38, 90, 314, 383, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 446
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 3 cut(s) 374, 455, 463
HspAI GCGC 1 cut(s) 292
KasI GGCGCC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 24, 26, 204, 215, 345, 393, 464, 491
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 19, 31, 232
MluCI AATT 3 cut(s) 53, 94, 348
Mly113I GGCGCC 1 cut(s) 292
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 3 cut(s) 100, 172, 439
Mph1103I ATGCAT 1 cut(s) 92
MseI TTAA 3 cut(s) 209, 347, 354
MspCI CTTAAG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 14, 479
MvaI CCWGG 2 cut(s) 14, 479
MwoI GCNNNNNNNGC 2 cut(s) 376, 446
NarI GGCGCC 1 cut(s) 292
NlaIII CATG 3 cut(s) 374, 455, 463
NlaIV GGNNCC 2 cut(s) 293, 499
NmuCI GTSAC 3 cut(s) 19, 31, 232
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 374
PceI AGGCCT 1 cut(s) 110
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 12, 477
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 12, 477
PspN4I GGNNCC 2 cut(s) 293, 499
PspPI GGNCC 2 cut(s) 242, 448
PstI CTGCAG 1 cut(s) 40
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 209, 347, 354
SatI GCNGC 1 cut(s) 441
Sau96I GGNCC 2 cut(s) 242, 448
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 14, 479
SetI ASST 8 cut(s) 43, 64, 75, 82, 151, 363, 409, 431
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 293
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 53, 94, 348
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 1 cut(s) 319
SspDI GGCGCC 1 cut(s) 291
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 12, 477
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 25, 200, 251
TasI AATT 3 cut(s) 53, 94, 348
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 3 cut(s) 209, 347, 354
Tru9I TTAA 3 cut(s) 209, 347, 354
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 3 cut(s) 19, 31, 232
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 3 cut(s) 19, 31, 232
TspDTI ATGAA 2 cut(s) 63, 353
TspRI CASTG 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 176
XceI RCATGY 1 cut(s) 374
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.