Rmu_sc0017347.1_g000003

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017347.1
Physical Location & Seq
Reverse (-)
18959 .. 20629
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017347.1_g000003.1.cds

Sequence Viewer

Length: 861 bp
atgaaggccgtagtgataacagtcctaggtggacccgaggtcctccaactacaacaagtcgaagacccagaactcaaagacggcgaggtcctcatcaaagtcgaggcggcggcgctgaacaagctcgacgcgtttcagaggcaaggagtgttcgcaccacctccgggtgcaagtccctaccctggtctcgaatgttccggaaccatcgaggccgtcggaggacacgtgtcacgctggaaagtcggcgatcaggtgtgtgctctacttagtggaggagggtatgccgagaaggtggctgttccggcaggacaggttcttccggttccacctggtatttctttgaaggatgctgcaagctttcccgaagtggcgtgcactgtttggtccactatttttatgattagccggctatcttccggtgaaatacttttgattcatgggggctctagcggaattggtacatttgcgattcagatggctaaatactggggagctagggtgtttgtcacagcaggtaatgaggaaaagttagcagcttgtaaggatcttggcgctgatgtatgtatcaattacaagacagaggactttgttgcacgcgtaaaggaagaaacaggtggcaaaggtgttgatgtcatcttggatagcctcgggcaagcctattttcagcgaaaccttgacagcttaaattttgatgggaggctttttctcattgggacaatgagtggctctgtcacagaattagatctccgtgtggtgctttcaaagcgccttaccatccaagcggctggtttgcgagtagttgtaatttggtgcttcatgccctcccatggattaactttgattcatcttagtaaccggtga

Protein Analysis

286

Amino Acids

30.38

Weight (kDa)

5.64

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 503
AccII CGCG 2 cut(s) 131, 597
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 4 cut(s) 107, 110, 450, 782
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 1 cut(s) 685
AcvI CACGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 164, 182, 827
AflIII ACRYGT 4 cut(s) 129, 223, 225, 595
AgeI ACCGGT 1 cut(s) 855
AgsI TTSAA 2 cut(s) 343, 762
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 2 cut(s) 181, 328
AluBI AGCT 5 cut(s) 124, 357, 494, 536, 681
AluI AGCT 5 cut(s) 124, 357, 494, 536, 681
Alw21I GWGCWC 2 cut(s) 262, 377
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 1 cut(s) 552
Ama87I CYCGRG 2 cut(s) 35, 647
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 6, 210
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 350, 533
ApoI RAATTY 1 cut(s) 685
AsiGI ACCGGT 1 cut(s) 855
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 3 cut(s) 115, 554, 768
AspS9I GGNCC 4 cut(s) 32, 40, 88, 384
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 2 cut(s) 35, 647
AvaII GGWCC 4 cut(s) 32, 40, 88, 384
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 446
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 262, 377
BbvI GCAGC 2 cut(s) 337, 545
BccI CCATC 4 cut(s) 212, 469, 686, 782
BceAI ACGGC 2 cut(s) 97, 197
BciT130I CCWGG 2 cut(s) 183, 330
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 26, 447, 495
BfoI RGCGCY 3 cut(s) 116, 555, 769
BfuAI ACCTGC 1 cut(s) 503
BglII AGATCT 1 cut(s) 742
BisI GCNGC 5 cut(s) 108, 111, 351, 534, 783
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 5 cut(s) 109, 112, 352, 535, 784
Bme1390I CCNGG 3 cut(s) 165, 183, 330
Bme18I GGWCC 4 cut(s) 32, 40, 88, 384
BmeRI GACNNNNNGTC 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 35, 647
BmgT120I GGNCC 4 cut(s) 32, 40, 88, 384
BmiI GGNNCC 3 cut(s) 34, 202, 324
BmrFI CCNGG 3 cut(s) 165, 183, 330
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 496
BoxI GACNNNNGTC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 69
BpuMI CCSGG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 5 cut(s) 25, 36, 181, 646, 826
BsaWI WCCGGW 4 cut(s) 197, 319, 416, 855
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 483, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 182, 827
Bse118I RCCGGY 2 cut(s) 405, 855
Bse1I ACTGG 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 2 cut(s) 183, 330
BseDI CCNNGG 5 cut(s) 25, 36, 181, 646, 826
BseGI GGATG 2 cut(s) 352, 774
BseLI CCNNNNNNNGG 3 cut(s) 164, 182, 827
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 337, 545
Bsh1236I CGCG 2 cut(s) 131, 597
BshFI GGCC 2 cut(s) 8, 212
BshTI ACCGGT 1 cut(s) 855
BsiHKAI GWGCWC 2 cut(s) 262, 377
BsiHKCI CYCGRG 2 cut(s) 35, 647
BsiSI CCGG 7 cut(s) 164, 198, 302, 320, 406, 417, 856
BslFI GGGAC 2 cut(s) 159, 727
BslI CCNNNNNNNGG 3 cut(s) 164, 182, 827
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 159, 727
BsnI GGCC 2 cut(s) 8, 212
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 35, 647
Bsp1286I GDGCHC 3 cut(s) 262, 377, 446
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 3 cut(s) 247, 544, 742
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 4 cut(s) 107, 110, 450, 782
BspANI GGCC 2 cut(s) 8, 212
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 2 cut(s) 131, 597
BspLI GGNNCC 3 cut(s) 34, 202, 324
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 1 cut(s) 552
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 405, 855
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 2 cut(s) 405, 855
BssECI CCNNGG 5 cut(s) 25, 36, 181, 646, 826
BssMI GATC 3 cut(s) 247, 544, 742
BssT1I CCWWGG 2 cut(s) 25, 826
Bst2UI CCWGG 2 cut(s) 183, 330
Bst4CI ACNGT 2 cut(s) 22, 379
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 5 cut(s) 355, 373, 407, 595, 654
BstDEI CTNAG 2 cut(s) 266, 848
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 2 cut(s) 352, 774
BstFNI CGCG 2 cut(s) 131, 597
BstH2I RGCGCY 3 cut(s) 116, 555, 769
BstHHI GCGC 3 cut(s) 115, 554, 768
BstKTI GATC 3 cut(s) 250, 547, 745
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 3 cut(s) 247, 544, 742
BstMWI GCNNNNNNNGC 3 cut(s) 121, 302, 763
BstNI CCWGG 2 cut(s) 183, 330
BstPAI GACNNNNGTC 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 163, 181, 328
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 2 cut(s) 131, 597
BstV1I GCAGC 2 cut(s) 337, 545
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 2 cut(s) 544, 742
BstXI CCANNNNNNTGG 1 cut(s) 785
BstYI RGATCY 2 cut(s) 544, 742
BsuRI GGCC 2 cut(s) 8, 212
BtgI CCRYGG 1 cut(s) 826
BtsCI GGATG 2 cut(s) 352, 774
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 5 cut(s) 355, 373, 407, 595, 654
CfoI GCGC 3 cut(s) 115, 554, 768
Cfr10I RCCGGY 2 cut(s) 405, 855
Cfr13I GGNCC 4 cut(s) 32, 40, 88, 384
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 1 cut(s) 459
CspAI ACCGGT 1 cut(s) 855
CviAII CATG 3 cut(s) 437, 817, 827
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 266, 848
DpnI GATC 3 cut(s) 249, 546, 744
DpnII GATC 3 cut(s) 247, 544, 742
DrdI GACNNNNNNGTC 1 cut(s) 86
DriI GACNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 25, 826
Eco24I GRGCYC 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 4 cut(s) 32, 40, 88, 384
Eco72I CACGTG 1 cut(s) 226
Eco88I CYCGRG 2 cut(s) 35, 647
EcoO109I RGGNCCY 2 cut(s) 40, 88
EcoRII CCWGG 2 cut(s) 181, 328
EcoT14I CCWWGG 2 cut(s) 25, 826
EcoT38I GRGCYC 1 cut(s) 446
ErhI CCWWGG 2 cut(s) 25, 826
FaeI CATG 3 cut(s) 440, 820, 830
FaiI YATR 6 cut(s) 282, 398, 438, 562, 818, 828
FaqI GGGAC 2 cut(s) 159, 727
FatI CATG 3 cut(s) 436, 816, 826
Fnu4HI GCNGC 5 cut(s) 108, 111, 351, 534, 783
FokI GGATG 2 cut(s) 359, 761
FriOI GRGCYC 1 cut(s) 446
Fsp4HI GCNGC 5 cut(s) 108, 111, 351, 534, 783
FspBI CTAG 3 cut(s) 26, 447, 495
GlaI GCGC 3 cut(s) 114, 553, 767
GluI GCNGC 5 cut(s) 108, 111, 351, 534, 783
HaeII RGCGCY 3 cut(s) 116, 555, 769
HaeIII GGCC 2 cut(s) 8, 212
HapII CCGG 7 cut(s) 164, 198, 302, 320, 406, 417, 856
HgaI GACGC 1 cut(s) 137
HhaI GCGC 3 cut(s) 115, 554, 768
Hin1II CATG 3 cut(s) 440, 820, 830
Hin6I GCGC 3 cut(s) 113, 552, 766
HinP1I GCGC 3 cut(s) 113, 552, 766
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 3 cut(s) 433, 469, 841
HpaII CCGG 7 cut(s) 164, 198, 302, 320, 406, 417, 856
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 32, 375, 387
Hpy188I TCNGA 3 cut(s) 138, 218, 474
Hpy188III TCNNGA 3 cut(s) 188, 198, 362
Hpy8I GTNNAC 3 cut(s) 32, 375, 387
Hpy99I CGWCG 2 cut(s) 131, 218
HpyAV CCTTC 2 cut(s) 283, 337
HpyCH4III ACNGT 2 cut(s) 22, 379
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 170, 353, 375, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 302, 763
HpyF3I CTNAG 2 cut(s) 266, 848
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 440, 820, 830
HspAI GCGC 3 cut(s) 113, 552, 766
Kpn2I TCCGGA 1 cut(s) 197
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 247, 544, 742
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 2 cut(s) 337, 545
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 3 cut(s) 26, 447, 495
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 228, 505, 730, 851
MalI GATC 3 cut(s) 249, 546, 744
MboI GATC 3 cut(s) 247, 544, 742
MboII GAAGA 4 cut(s) 74, 308, 405, 617
MflI RGATCY 2 cut(s) 544, 742
MhlI GDGCHC 3 cut(s) 262, 377, 446
MluCI AATT 5 cut(s) 453, 568, 685, 737, 804
MluI ACGCGT 2 cut(s) 129, 595
MmeI TCCRAC 2 cut(s) 70, 196
MroI TCCGGA 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 2 cut(s) 683, 833
MspI CCGG 7 cut(s) 164, 198, 302, 320, 406, 417, 856
MspR9I CCNGG 3 cut(s) 165, 183, 330
MvaI CCWGG 2 cut(s) 183, 330
MvnI CGCG 2 cut(s) 131, 597
MwoI GCNNNNNNNGC 3 cut(s) 121, 302, 763
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 826
NdeII GATC 3 cut(s) 247, 544, 742
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 3 cut(s) 440, 820, 830
NlaIV GGNNCC 3 cut(s) 34, 202, 324
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 228, 505, 730
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 433, 469, 841
PinAI ACCGGT 1 cut(s) 855
PkrI GCNGC 5 cut(s) 109, 112, 352, 535, 784
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 2 cut(s) 40, 88
PshAI GACNNNNGTC 1 cut(s) 226
Psp5II RGGWCCY 2 cut(s) 40, 88
Psp6I CCWGG 2 cut(s) 181, 328
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 2 cut(s) 181, 328
PspN4I GGNNCC 3 cut(s) 34, 202, 324
PspPI GGNCC 4 cut(s) 32, 40, 88, 384
PspPPI RGGWCCY 2 cut(s) 40, 88
PsuI RGATCY 2 cut(s) 544, 742
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 683, 833
SatI GCNGC 5 cut(s) 108, 111, 351, 534, 783
Sau3AI GATC 3 cut(s) 247, 544, 742
Sau96I GGNCC 4 cut(s) 32, 40, 88, 384
ScrFI CCNGG 3 cut(s) 165, 183, 330
SduI GDGCHC 3 cut(s) 262, 377, 446
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 4 cut(s) 32, 40, 88, 384
Sse9I AATT 5 cut(s) 453, 568, 685, 737, 804
SsiI CCGC 4 cut(s) 107, 110, 450, 782
SspMI CTAG 3 cut(s) 26, 447, 495
StyD4I CCNGG 3 cut(s) 163, 181, 328
StyI CCWWGG 2 cut(s) 25, 826
TaaI ACNGT 2 cut(s) 22, 379
TaiI ACGT 1 cut(s) 228
TaqI TCGA 5 cut(s) 60, 102, 126, 189, 207
TasI AATT 5 cut(s) 453, 568, 685, 737, 804
TauI GCSGC 3 cut(s) 110, 113, 785
TfiI GAWTC 3 cut(s) 433, 469, 841
Tru1I TTAA 2 cut(s) 683, 833
Tru9I TTAA 2 cut(s) 683, 833
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 3 cut(s) 228, 505, 730
TseI GCWGC 2 cut(s) 350, 533
Tsp45I GTSAC 3 cut(s) 228, 505, 730
TspDTI ATGAA 4 cut(s) 17, 425, 805, 833
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 4 cut(s) 32, 40, 88, 384
XapI RAATTY 1 cut(s) 685
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 3 cut(s) 26, 447, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.