Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009664

Physical Location & Seq

Genomic Coordinates Reverse (-)

1812461 .. 1816950

Gene Structure 4490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG026100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGCTAATGGTGGAGCTGCAGTCTTGTGCTAGATTGGTCAAGGCTTCTGCATTACGCGCGATAGAGGAAGGTATGAAAGGAGACGGTGTCCATGTTATTGCAGAGATTTCAGCTGAATTAGAAAGGGAAAGACAGAAGAATGCAGAACTTATGCACAGAATACTAATTCTTGAAGCTCGGATACAGGAAAAAGAGAATGAACCTCCTCGAACAAATGGACAGGGCAGTTGCTCAAATTCAATGGAAAGAAACTTGAAGAAGTTCAAGAGACAGAAGATTGAACTCACTAGTAACACAACTGAGGATGGTAGTATAACTGTTGTCCAAGCTGAAATTGCTGCACAGAAGAAGCATCATATTGAATCCTATGCCCTTGAAGATCCAATTGTAGATGACCGTCAAGTCAACTGGATGAGCATGGAGGAAACACAGGTTTTGCTTTCTGAAAAAGCTAAGGATGGTGATTCAACTGCAGATTGTGATGAAACTGATGACAGTGATGATGAAGATGAAGATTATCGCGAAGAAGATGGCATTAACAATGACCATAAAGAAGCTGATGGAACTTCAAGACTTATTGATGAACTGATTTATGAAGTTGCTGATAAGGGTTCAGATGCAGGGTGTGCAGAAATTTTCTCAGGTGCAGTTCAGCCACTATTTCAAAATGTGAACCGAGAAACCAATGAAGAACTACCAATAGCGCCAATTTGTAATGAGATGGAAATTAGAAACCAAAACAAGACAGAACCTAAGGATTTTGGAAGTTTCAAGGTACCAACTAGTGTCCCAACTTCGAAGAAGGAGTTTATTCATACAGGATCTGGGAGCCTATCACAACATAAAAAGCCTCCAAAGTTGGCATTTTGCCCAAAAGAAGTGAAGAGAATAATTGATTCAGAATCCCTTCTTCAGAAAAATGCTCATTCACACACAATAAGGAAGATCATAGTTTTTGCATCTCTTGGTATAAGGCATGGTTGTGAAGATATATATGAATTAGACTTCAACCATTTTAACATTTTAAGGAAGGGCGATCAATATATATCTCCAACAGATCCTGGGGAGCATGTTCTGTATGAAAATCCTGGTGTTCGGAGGAAGGTATTCTATCCAAACCGAAAGAACCCTACACTATGTCCAGTTCAAATACTTGAGGAAGAGAAGGCTATGCGTCCATCAGATCCTAGCTGCCCATCATGCTTATTTCTATGCATCAAGTATGGTGGAAGGACAAGAAACCTTCCCCAAAATGAATATGTCAGACAGCGCATGGGAAGAAACAAGCTAAAGTCTTTTGGGCCATTGATGTGTCGAATGGCAATGCTAGCTCATGTTCGCAGTGGGAGCTTCTTTTTCAAAGCCTTGGGAATCACACTTCTTTTCATGGCTGGTTTTCCTGATGACCTGGTTCAAAGGGAAACCAAATATCGGAACTTAGACTTGCTCCAGAAATATTACAGGACAGATGAGGATGCTGAAGGAGAGGAGTTATTTCTTGCATATCCTATGATAGATGATGATACTGTAAGATTGCCATCTCAGTTCATATATCTGAATACTTCCCTTTTTCTATTAAACATTGACAAACTCAGTTTCGAGAAGAATAAAAGTCAATTTGATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

542

Amino Acids

61.79

Weight (kDa)

5.32

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009664)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02100 FvH4_3g02100 FvH4_3g02100 FvH4_3g02100 FvH4_3g02100
malus_domestica	MD05G1345700.v1.1 MD10G1321100.v1.1
prunus_persica	Prupe.4G021200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0003191
rosa_laevigata	RLG00000031084
rosa_multiflora	Rmu_sc0000146.1_g000035
rosa_roxburghii	Rroxscaffold_1G00072820
rosa_rugosa	Rorug04G0401200 Rorug04G0401300 Rorug04G0401300 Rorug04G0401300 Rorug04G0401400
rosa_samantha	Rh5AG026100 Rh5BG027300 Rh5CG028900 Rh5DG025800
rosa_wichuraiana	Rw5G002420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccII	CGCG	3 cut(s)	57, 59, 522
AclWI	GGATC	4 cut(s)	374, 829, 1052, 1178
AcsI	RAATTY	2 cut(s)	235, 633
AcuI	CTGAAG	2 cut(s)	896, 1500
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	1 cut(s)	1431
AhlI	ACTAGT	2 cut(s)	287, 782
AjnI	CCWGG	3 cut(s)	1060, 1087, 1407
Alw26I	GTCTC	2 cut(s)	75, 262
AlwI	GGATC	4 cut(s)	374, 829, 1052, 1178
AlwNI	CAGNNNCTG	2 cut(s)	824, 1061
AoxI	GGCC	1 cut(s)	1301
ApeKI	GCWGC	3 cut(s)	16, 338, 1191
ApoI	RAATTY	2 cut(s)	235, 633
Asp700I	GAANNNNTTC	3 cut(s)	260, 906, 1106
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	3 cut(s)	59, 706, 1272
AspS9I	GGNCC	1 cut(s)	1301
AsuHPI	GGTGA	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	797
AsuNHI	GCTAGC	1 cut(s)	1327
AxyI	CCTNAGG	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	775
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbvI	GCAGC	3 cut(s)	3, 325, 1178
BccI	CCATC	8 cut(s)	299, 452, 524, 554, 715, 1186, 1204, 1546
BciT130I	CCWGG	3 cut(s)	1062, 1089, 1409
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	75, 262
BcuI	ACTAGT	2 cut(s)	287, 782
BfaI	CTAG	5 cut(s)	30, 288, 783, 1188, 1328
BfmI	CTRYAG	2 cut(s)	17, 471
BfoI	RGCGCY	1 cut(s)	707
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	17, 339, 1192
BlsI	GCNGC	3 cut(s)	18, 340, 1193
Bme1390I	CCNGG	3 cut(s)	1062, 1089, 1409
BmgT120I	GGNCC	1 cut(s)	1301
BmiI	GGNNCC	2 cut(s)	777, 830
BmrFI	CCNGG	3 cut(s)	1062, 1089, 1409
BmsI	GCATC	5 cut(s)	361, 607, 968, 1224, 1465
BmtI	GCTAGC	1 cut(s)	1331
BpmI	CTGGAG	1 cut(s)	1433
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	1 cut(s)	1175
BsaBI	GATNNNNATC	1 cut(s)	1537
BsaJI	CCNNGG	2 cut(s)	1061, 1365
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	1431
Bse1I	ACTGG	2 cut(s)	413, 1142
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	1329
Bse8I	GATNNNNATC	1 cut(s)	1537
BseBI	CCWGG	3 cut(s)	1062, 1089, 1409
BseDI	CCNNGG	2 cut(s)	1061, 1365
BseGI	GGATG	4 cut(s)	310, 417, 463, 1480
BseJI	GATNNNNATC	1 cut(s)	1537
BseLI	CCNNNNNNNGG	1 cut(s)	1431
BseMI	GCAATG	1 cut(s)	1329
BseMII	CTCAG	4 cut(s)	291, 654, 1556, 1606
BseNI	ACTGG	2 cut(s)	413, 1142
BseRI	GAGGAG	2 cut(s)	195, 1502
BseXI	GCAGC	3 cut(s)	3, 325, 1178
BsgI	GTGCAG	3 cut(s)	324, 648, 666
Bsh1236I	CGCG	3 cut(s)	57, 59, 522
BshFI	GGCC	1 cut(s)	1303
BshNI	GGYRCC	1 cut(s)	775
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	1431
BsmAI	GTCTC	2 cut(s)	75, 262
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	1303
Bsp119I	TTCGAA	1 cut(s)	797
Bsp143I	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
Bsp68I	TCGCGA	1 cut(s)	522
BspANI	GGCC	1 cut(s)	1303
BspCNI	CTCAG	4 cut(s)	292, 653, 1555, 1605
BspFNI	CGCG	3 cut(s)	57, 59, 522
BspLI	GGNNCC	2 cut(s)	777, 830
BspMAI	CTGCAG	2 cut(s)	21, 475
BspOI	GCTAGC	1 cut(s)	1331
BspPI	GGATC	4 cut(s)	374, 829, 1052, 1178
BspT104I	TTCGAA	1 cut(s)	797
BspT107I	GGYRCC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	1329
BsrI	ACTGG	2 cut(s)	413, 1142
BssECI	CCNNGG	2 cut(s)	1061, 1365
BssMI	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
BssT1I	CCWWGG	1 cut(s)	1365
Bst2UI	CCWGG	3 cut(s)	1062, 1089, 1409
Bst4CI	ACNGT	5 cut(s)	86, 319, 398, 497, 1528
Bst6I	CTCTTC	2 cut(s)	878, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	1329
BstDEI	CTNAG	7 cut(s)	300, 453, 640, 753, 1438, 1542, 1592
BstF5I	GGATG	4 cut(s)	310, 417, 463, 1480
BstFNI	CGCG	3 cut(s)	57, 59, 522
BstH2I	RGCGCY	1 cut(s)	707
BstHHI	GCGC	3 cut(s)	59, 706, 1272
BstKTI	GATC	6 cut(s)	382, 824, 948, 1039, 1060, 1186
BstMAI	GTCTC	2 cut(s)	75, 262
BstMBI	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 335, 626, 1200, 1328, 1347
BstNI	CCWGG	3 cut(s)	1062, 1089, 1409
BstNSI	RCATGY	1 cut(s)	1073
BstSCI	CCNGG	3 cut(s)	1060, 1087, 1407
BstSFI	CTRYAG	2 cut(s)	17, 471
BstUI	CGCG	3 cut(s)	57, 59, 522
BstV1I	GCAGC	3 cut(s)	3, 325, 1178
BstX2I	RGATCY	4 cut(s)	379, 821, 1057, 1183
BstYI	RGATCY	4 cut(s)	379, 821, 1057, 1183
Bsu36I	CCTNAGG	1 cut(s)	753
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	1303
BtsCI	GGATG	4 cut(s)	310, 417, 463, 1480
BtsI	GCAGTG	1 cut(s)	1348
BtsIMutI	CAGTG	2 cut(s)	502, 1348
BtuMI	TCGCGA	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	1329
CaiI	CAGNNNCTG	2 cut(s)	824, 1061
CfoI	GCGC	3 cut(s)	59, 706, 1272
Cfr13I	GGNCC	1 cut(s)	1301
CseI	GACGC	1 cut(s)	1163
CsiI	ACCWGGT	1 cut(s)	1407
Csp6I	GTAC	1 cut(s)	776
CspCI	CAANNNNNGTGG	2 cut(s)	1207, 1242
CviAII	CATG	8 cut(s)	92, 418, 977, 1070, 1200, 1273, 1334, 1387
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	7 cut(s)	300, 453, 640, 753, 1438, 1542, 1592
DpnI	GATC	6 cut(s)	381, 823, 947, 1038, 1059, 1185
DpnII	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
DrdI	GACNNNNNNGTC	1 cut(s)	401
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	878, 1155
EarI	CTCTTC	2 cut(s)	878, 1155
Eco130I	CCWWGG	1 cut(s)	1365
Eco57I	CTGAAG	2 cut(s)	896, 1500
Eco81I	CCTNAGG	1 cut(s)	753
EcoRII	CCWGG	3 cut(s)	1060, 1087, 1407
EcoT14I	CCWWGG	1 cut(s)	1365
EcoT22I	ATGCAT	1 cut(s)	1217
ErhI	CCWWGG	1 cut(s)	1365
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	8 cut(s)	95, 421, 980, 1073, 1203, 1276, 1337, 1390
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	8 cut(s)	91, 417, 976, 1069, 1199, 1272, 1333, 1386
Fnu4HI	GCNGC	3 cut(s)	17, 339, 1192
FokI	GGATG	4 cut(s)	317, 424, 470, 1487
Fsp4HI	GCNGC	3 cut(s)	17, 339, 1192
FspBI	CTAG	5 cut(s)	30, 288, 783, 1188, 1328
GlaI	GCGC	3 cut(s)	58, 705, 1271
GluI	GCNGC	3 cut(s)	17, 339, 1192
GsuI	CTGGAG	1 cut(s)	1433
HaeII	RGCGCY	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	1303
HgaI	GACGC	1 cut(s)	1163
HhaI	GCGC	3 cut(s)	59, 706, 1272
Hin1II	CATG	8 cut(s)	95, 421, 980, 1073, 1203, 1276, 1337, 1390
Hin6I	GCGC	3 cut(s)	57, 704, 1270
HinP1I	GCGC	3 cut(s)	57, 704, 1270
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	6 cut(s)	362, 464, 896, 902, 1371, 1622
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	2 cut(s)	406, 673
Hpy188III	TCNNGA	7 cut(s)	170, 265, 521, 570, 1400, 1450, 1600
Hpy8I	GTNNAC	2 cut(s)	406, 673
HpyAV	CCTTC	9 cut(s)	62, 796, 917, 1024, 1096, 1159, 1224, 1253, 1475
HpyCH4III	ACNGT	5 cut(s)	86, 319, 398, 497, 1528
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 335, 626, 1200, 1328, 1347
HpyF3I	CTNAG	7 cut(s)	300, 453, 640, 753, 1438, 1542, 1592
Hsp92II	CATG	8 cut(s)	95, 421, 980, 1073, 1203, 1276, 1337, 1390
HspAI	GCGC	3 cut(s)	57, 704, 1270
KpnI	GGTACC	1 cut(s)	779
Kzo9I	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
LmnI	GCTCC	5 cut(s)	13, 828, 1066, 1347, 1452
Lsp1109I	GCAGC	3 cut(s)	3, 325, 1178
LweI	GCATC	5 cut(s)	361, 607, 968, 1224, 1465
MabI	ACCWGGT	1 cut(s)	1407
MaeI	CTAG	5 cut(s)	30, 288, 783, 1188, 1328
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	6 cut(s)	381, 823, 947, 1038, 1059, 1185
MboI	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	4 cut(s)	379, 821, 1057, 1183
MmeI	TCCRAC	1 cut(s)	1076
Mph1103I	ATGCAT	1 cut(s)	1217
MroXI	GAANNNNTTC	3 cut(s)	260, 906, 1106
MseI	TTAA	4 cut(s)	537, 1017, 1025, 1577
MslI	CAYNNNNRTG	2 cut(s)	981, 1309
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	1062, 1089, 1409
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	3 cut(s)	1062, 1089, 1409
MvnI	CGCG	3 cut(s)	57, 59, 522
MwoI	GCNNNNNNNGC	6 cut(s)	56, 335, 626, 1200, 1328, 1347
NdeII	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
NheI	GCTAGC	1 cut(s)	1327
NlaIII	CATG	8 cut(s)	95, 421, 980, 1073, 1203, 1276, 1337, 1390
NlaIV	GGNNCC	2 cut(s)	777, 830
NruI	TCGCGA	1 cut(s)	522
NsiI	ATGCAT	1 cut(s)	1217
NspI	RCATGY	1 cut(s)	1073
NspV	TTCGAA	1 cut(s)	797
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	3 cut(s)	260, 906, 1106
PfeI	GAWTC	6 cut(s)	362, 464, 896, 902, 1371, 1622
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	18, 340, 1193
Psp6I	CCWGG	3 cut(s)	1060, 1087, 1407
PspGI	CCWGG	3 cut(s)	1060, 1087, 1407
PspN4I	GGNNCC	2 cut(s)	777, 830
PspPI	GGNCC	1 cut(s)	1301
PstI	CTGCAG	2 cut(s)	21, 475
PstNI	CAGNNNCTG	2 cut(s)	824, 1061
PsuI	RGATCY	4 cut(s)	379, 821, 1057, 1183
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	113
RruI	TCGCGA	1 cut(s)	522
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	981, 1309
SaqAI	TTAA	4 cut(s)	537, 1017, 1025, 1577
SatI	GCNGC	3 cut(s)	17, 339, 1192
Sau3AI	GATC	6 cut(s)	379, 821, 945, 1036, 1057, 1183
Sau96I	GGNCC	1 cut(s)	1301
ScrFI	CCNGG	3 cut(s)	1062, 1089, 1409
SexAI	ACCWGGT	1 cut(s)	1407
SfaNI	GCATC	5 cut(s)	361, 607, 968, 1224, 1465
SfcI	CTRYAG	2 cut(s)	17, 471
SfuI	TTCGAA	1 cut(s)	797
SmiMI	CAYNNNNRTG	2 cut(s)	981, 1309
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
SpeI	ACTAGT	2 cut(s)	287, 782
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	5 cut(s)	30, 288, 783, 1188, 1328
StyD4I	CCNGG	3 cut(s)	1060, 1087, 1407
StyI	CCWWGG	1 cut(s)	1365
TaaI	ACNGT	5 cut(s)	86, 319, 398, 497, 1528
TaqI	TCGA	4 cut(s)	208, 797, 1315, 1599
TfiI	GAWTC	6 cut(s)	362, 464, 896, 902, 1371, 1622
Tru1I	TTAA	4 cut(s)	537, 1017, 1025, 1577
Tru9I	TTAA	4 cut(s)	537, 1017, 1025, 1577
TscAI	CASTG	2 cut(s)	502, 1348
TseI	GCWGC	3 cut(s)	16, 338, 1191
TspRI	CASTG	2 cut(s)	502, 1348
Tth111I	GACNNNGTC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	235, 633
XceI	RCATGY	1 cut(s)	1073
XmnI	GAANNNNTTC	3 cut(s)	260, 906, 1106
XspI	CTAG	5 cut(s)	30, 288, 783, 1188, 1328
Zsp2I	ATGCAT	1 cut(s)	1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.