Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000152.1

Orthogroup ID

OG0010113

Physical Location & Seq

Genomic Coordinates Forward (+)

16920 .. 26404

Gene Structure 9485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2802 bp

atgtgtaggaggagcagcctgagtccggatgaagagaggattttgataaaagacattgctttggctgccgaagcgaaatccaaagagggcgataccttcttcttgattacccaaagatggtggcaacattggattgattatgtgaaccaagaacaacagcccgacgtctcagagcattgtgatttggctgattcaagtagcttcaagaggcctgctggcattgataattccgatttgatatccgacgacgccattgagatacaggatactttattagaaggccgtgactatgtgttgctcccccaacaagtttggaaccagttgcatacatggtatggaggtgggccaacattacccaggagagtcattagttcaggtccttctcacacagagatggctgttgaagtctaccctctgcgtctccaattgcttgtggtgcccaaaggcggccgctcgactataagaataagcaagaaagaaacaattggagagcttcacagaagagcttgtgaaatctttgatcttagcccggaacaagtatccatttgggatttctatggacgcaagcaacatgccctcatgaccgacattgataaaacacttgatgatgcgaatatacaaatggaccaggatattctggtggaggtccttagtcctgacaatggtacgagaccgagtggatacacaagttctgttcgttacgatggatctttagaaaaggaagctgcctcagttcttgtagagccttctaagtcaagcttgtcgattgctggaggtttatctgcaagcaagggtgcatcaagaagctataacacagagcttgcacaaagtcaaagcctgacttcagttagagaattggatactacttatgggacaatcggtgttagtacaagaggttcgtctggtggtttgactgggttgcagaacctagggaatacttgttttatgaacagtgccatacaatgccttgttcatacaccagagttcgctagatattttcgggaagattatcatcaagagataaactgggaaaacactctgggtatgcgcggtgagctagctctagcattcggcgaattactgcggaagctttgggcacccggacgaacaccagttgctcctcgaccttttaaaacaaaacttgctcgttttgccccccaattcagtggttacaatcaacatgattctcaggaacttttggcttttttgctagatggtcttcatgaagatctgaatcgtgtgaaacagaaaccttatataaaatctaaagatgctgatggtcggcctgatgaagaagttgctgatgaatattgggcaaaccacattgctcgtaatgattccataatcgtcgatgtatgccaaggccaatacaaatcaactttggtttgccccatttgtaacaaagtctctgttacatttgatcccttcatgtacctatcattgcccctgcagtccaccacaactagaacaatgacagtaacagtctttgcatgcaatggaagtgcgttgccatctgcttacactgttacagttccaaaacagggacgttgccgggacttgatccaggcacttagcaatgctagctctgtgaagcacagtgagaggcttttgcttgttgagatacaaaaccacatgattcagcgatttctggaagacccattaatattattatctaccatcaaagatgatgatcatcttgctgcttacaaggttcaaaagtcggcgaagaacacaaaatatcttcagttggtacaccgtcgtaaggaccaaggaactagtgatggccagatcacatcaggatggctaccttatggaacacctcttctgtcggctatctcatgtgatgatgaaatcacaagaggcaacgtacagaacatggttcatacaatgctttctccaatgctaagaactgagagtttggatcatactgatatatctggtgcaagatctgcaatagcggcatcaaacccctctggaaacttgcgtggtgaagcatgtactgattccgctatatccaattcaatgaataatgatatcaccagttctaagccagtgaaatcactaaagttgtctcttcagttggtggatgaaagtaacgcatgcattgatctctcagtgggggaagagaaagctatcacattgccttcggcatcaacatcaatactagtatatgctgattggtcacagaagcttttagataaatatcatacccattatctggaaaacttgccagaagtttttaagtatggacctgtaacaaagaaagcccgcactgaacctctctccttgtacacttgccttgaagcatttctacgtgaagaaccactggtgcctgaagatatgtggtactgtccccaatgcaaggagcggcgacaagcaagtaaaaagctagatctttggaggcttcccgaagtgttagtcatccatctgaagaggttctcgtacagcaggtcaatgaagcataaactggaaacatttgtcaactttcccattcatgactttgatctaaccaattacattgctcacaaaagcaactctggacatcagctttacgaactctatgctttgaccaatcattatggtagcatgggtagtgggcattacactgcacatatcaagcttcttgatgagaacagatggtatagttttgatgacagtcatatatcacccataaatgaagaagatgtgaagtcagctgcagcatatgtactgttttatcgccgggtaaagagtgaagattcctttgttagcaatggagtcctatcctgtggaggtgacaacaaagttgcctcacacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUSP UCH USP7_C2

Protein Analysis

933

Amino Acids

104.71

Weight (kDa)

5.97

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUSP	PF06337	30 - 123	3.1e-20	DUSP domain
Ubiquitin_UBP8	PF25242	142 - 193	5.8e-10	UBP8-like, ubiquitin-like domain
UCH	PF00443	305 - 906	5e-78	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	756 - 888	7.2e-07	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40930 AT2G40930
fragaria_vesca	FvH4_1g29170 FvH4_1g29170
malus_domestica	MD17G1207100.v1.1
prunus_persica	Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1 Prupe.7G027100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494551
rosa_laevigata	RLG00000022671
rosa_multiflora	Rmu_sc0000152.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391080
rosa_rugosa	Rorug03G0265600
rosa_samantha	Rh3AG315800 Rh3BG351000 Rh3CG347800 Rh3DG350300
rosa_wichuraiana	Rw3G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	2439
AccB1I	GGYRCC	3 cut(s)	436, 1096, 2329
AccB7I	CCANNNNNTGG	1 cut(s)	2218
AccBSI	CCGCTC	2 cut(s)	453, 2368
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	1050
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	8 cut(s)	447, 451, 1050, 1084, 1958, 2007, 2269, 2368
AclWI	GGATC	4 cut(s)	715, 1415, 1555, 1929
AcoI	YGGCCR	2 cut(s)	448, 1783
AcuI	CTGAAG	5 cut(s)	828, 1727, 2060, 2355, 2450
AcyI	GRCGYC	2 cut(s)	165, 249
AfiI	CCNNNNNNNGG	8 cut(s)	25, 117, 446, 662, 1541, 1762, 2218, 2362
AgsI	TTSAA	6 cut(s)	195, 205, 404, 1715, 2022, 2303
AhlI	ACTAGT	2 cut(s)	1775, 2164
AjnI	CCWGG	3 cut(s)	356, 627, 1563
Alw26I	GTCTC	5 cut(s)	172, 425, 664, 1411, 2076
AlwI	GGATC	4 cut(s)	715, 1415, 1555, 1929
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	7 cut(s)	209, 280, 344, 448, 1283, 1363, 1783
ApeKI	GCWGC	6 cut(s)	15, 65, 725, 1700, 2696, 2699
ArsI	GACNNNNNNTTYG	2 cut(s)	2403, 2435
AseI	ATTAAT	1 cut(s)	1661
Asp700I	GAANNNNTTC	2 cut(s)	2307, 2435
AspA2I	CCTAGG	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	6 cut(s)	344, 377, 625, 646, 1765, 2249
AsuC2I	CCSGG	4 cut(s)	530, 1101, 1553, 2723
AsuHPI	GGTGA	5 cut(s)	1064, 2000, 2029, 2658, 2786
AsuNHI	GCTAGC	2 cut(s)	1057, 1580
AvaII	GGWCC	5 cut(s)	377, 625, 646, 1765, 2249
AvrII	CCTAGG	1 cut(s)	928
BaeGI	GKGCMC	2 cut(s)	441, 1099
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BalI	TGGCCA	1 cut(s)	1785
BanI	GGYRCC	3 cut(s)	436, 1096, 2329
BarI	GAAGNNNNNNTAC	2 cut(s)	2295, 2327
BbsI	GAAGAC	2 cut(s)	1211, 1659
BbvI	GCAGC	6 cut(s)	27, 52, 712, 1687, 2683, 2711
BceAI	ACGGC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	2543, 2577
BciT130I	CCWGG	3 cut(s)	358, 629, 1565
BciVI	GTATCC	4 cut(s)	259, 550, 674, 853
BclI	TGATCA	1 cut(s)	1690
BcnI	CCSGG	4 cut(s)	530, 1101, 1553, 2723
BcoDI	GTCTC	5 cut(s)	172, 425, 664, 1411, 2076
BcuI	ACTAGT	2 cut(s)	1775, 2164
BfmI	CTRYAG	2 cut(s)	1448, 2697
BfuAI	ACCTGC	1 cut(s)	2439
BfuI	GTATCC	4 cut(s)	259, 550, 674, 853
BglII	AGATCT	3 cut(s)	1228, 1946, 2392
BlnI	CCTAGG	1 cut(s)	928
Bme1390I	CCNGG	7 cut(s)	358, 530, 629, 1101, 1553, 1565, 2723
Bme18I	GGWCC	5 cut(s)	377, 625, 646, 1765, 2249
BmgT120I	GGNCC	6 cut(s)	344, 377, 625, 646, 1765, 2249
BmiI	GGNNCC	4 cut(s)	317, 438, 1098, 2331
BmrFI	CCNGG	7 cut(s)	358, 530, 629, 1101, 1553, 1565, 2723
BmrI	ACTGGG	2 cut(s)	924, 1036
BmsI	GCATC	5 cut(s)	598, 806, 1261, 1970, 2159
BmtI	GCTAGC	2 cut(s)	1061, 1584
BmuI	ACTGGG	2 cut(s)	924, 1036
BpiI	GAAGAC	2 cut(s)	1211, 1659
BpmI	CTGGAG	1 cut(s)	792
BpuMI	CCSGG	4 cut(s)	530, 1101, 1553, 2723
BsaAI	YACGTR	1 cut(s)	2315
BsaBI	GATNNNNATC	5 cut(s)	1011, 1233, 1689, 1692, 2202
BsaHI	GRCGYC	2 cut(s)	165, 249
BsaI	GGTCTC	1 cut(s)	664
BsaJI	CCNNGG	4 cut(s)	356, 928, 1360, 1768
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	8 cut(s)	25, 117, 446, 662, 1541, 1762, 2218, 2362
Bse1I	ACTGG	8 cut(s)	319, 919, 1031, 1112, 2040, 2051, 2331, 2472
Bse3DI	GCAATG	8 cut(s)	54, 1323, 1439, 1501, 1582, 2138, 2517, 2758
Bse8I	GATNNNNATC	5 cut(s)	1011, 1233, 1689, 1692, 2202
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	3 cut(s)	358, 629, 1565
BseDI	CCNNGG	4 cut(s)	356, 928, 1360, 1768
BseGI	GGATG	4 cut(s)	34, 1805, 2092, 2421
BseJI	GATNNNNATC	5 cut(s)	1011, 1233, 1689, 1692, 2202
BseLI	CCNNNNNNNGG	8 cut(s)	25, 117, 446, 662, 1541, 1762, 2218, 2362
BseMI	GCAATG	8 cut(s)	54, 1323, 1439, 1501, 1582, 2138, 2517, 2758
BseMII	CTCAG	6 cut(s)	11, 183, 744, 1202, 1902, 2127
BseNI	ACTGG	8 cut(s)	319, 919, 1031, 1112, 2040, 2051, 2331, 2472
BseRI	GAGGAG	2 cut(s)	25, 1110
BseSI	GKGCMC	2 cut(s)	441, 1099
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	6 cut(s)	27, 52, 712, 1687, 2683, 2711
BsgI	GTGCAG	1 cut(s)	2592
Bsh1236I	CGCG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	7 cut(s)	211, 282, 346, 450, 1285, 1365, 1785
BshNI	GGYRCC	3 cut(s)	436, 1096, 2329
BsiEI	CGRYCG	1 cut(s)	451
BsiSI	CCGG	5 cut(s)	26, 530, 1101, 1552, 2722
BslFI	GGGAC	4 cut(s)	886, 1557, 1568, 2337
BslI	CCNNNNNNNGG	8 cut(s)	25, 117, 446, 662, 1541, 1762, 2218, 2362
BsmAI	GTCTC	5 cut(s)	172, 425, 664, 1411, 2076
BsmBI	CGTCTC	2 cut(s)	172, 425
BsmFI	GGGAC	4 cut(s)	886, 1557, 1568, 2337
BsmI	GAATGC	1 cut(s)	1067
BsnI	GGCC	7 cut(s)	211, 282, 346, 450, 1285, 1365, 1785
Bso31I	GGTCTC	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	441, 1099
Bsp13I	TCCGGA	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	2289
BspACI	CCGC	8 cut(s)	447, 451, 1050, 1084, 1958, 2007, 2269, 2368
BspANI	GGCC	7 cut(s)	211, 282, 346, 450, 1285, 1365, 1785
BspCNI	CTCAG	6 cut(s)	12, 182, 743, 1201, 1903, 2126
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	3 cut(s)	579, 1222, 2494
BspLI	GGNNCC	4 cut(s)	317, 438, 1098, 2331
BspMAI	CTGCAG	2 cut(s)	1452, 2701
BspMI	ACCTGC	1 cut(s)	2439
BspOI	GCTAGC	2 cut(s)	1061, 1584
BspPI	GGATC	4 cut(s)	715, 1415, 1555, 1929
BspQI	GCTCTTC	1 cut(s)	496
BspT107I	GGYRCC	3 cut(s)	436, 1096, 2329
BspTNI	GGTCTC	1 cut(s)	664
BsrBI	CCGCTC	2 cut(s)	453, 2368
BsrDI	GCAATG	8 cut(s)	54, 1323, 1439, 1501, 1582, 2138, 2517, 2758
BsrGI	TGTACA	1 cut(s)	2289
BsrI	ACTGG	8 cut(s)	319, 919, 1031, 1112, 2040, 2051, 2331, 2472
BssECI	CCNNGG	4 cut(s)	356, 928, 1360, 1768
BssNI	GRCGYC	2 cut(s)	165, 249
BssT1I	CCWWGG	3 cut(s)	928, 1360, 1768
Bst2UI	CCWGG	3 cut(s)	358, 629, 1565
Bst6I	CTCTTC	6 cut(s)	27, 496, 1827, 2079, 2118, 2426
BstACI	GRCGYC	2 cut(s)	165, 249
BstAPI	GCANNNNNTGC	1 cut(s)	1949
BstAUI	TGTACA	1 cut(s)	2289
BstBAI	YACGTR	1 cut(s)	2315
BstF5I	GGATG	4 cut(s)	34, 1805, 2092, 2421
BstFNI	CGCG	1 cut(s)	1050
BstHHI	GCGC	1 cut(s)	1050
BstMAI	GTCTC	5 cut(s)	172, 425, 664, 1411, 2076
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 71, 436, 1054, 1151, 1581, 1949, 1958
BstNI	CCWGG	3 cut(s)	358, 629, 1565
BstNSI	RCATGY	4 cut(s)	575, 1494, 1998, 2103
BstSCI	CCNGG	7 cut(s)	356, 528, 627, 1099, 1551, 1563, 2721
BstSFI	CTRYAG	2 cut(s)	1448, 2697
BstSLI	GKGCMC	2 cut(s)	441, 1099
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	6 cut(s)	27, 52, 712, 1687, 2683, 2711
BstV2I	GAAGAC	2 cut(s)	1211, 1659
BstX2I	RGATCY	4 cut(s)	707, 1228, 1946, 2392
BstXI	CCANNNNNNTGG	1 cut(s)	1166
BstYI	RGATCY	4 cut(s)	707, 1228, 1946, 2392
BstZI	CGGCCG	1 cut(s)	448
BsuI	GTATCC	4 cut(s)	259, 550, 674, 853
BsuRI	GGCC	7 cut(s)	211, 282, 346, 450, 1285, 1365, 1785
BtsCI	GGATG	4 cut(s)	34, 1805, 2092, 2421
BtsI	GCAGTG	1 cut(s)	2604
BtsIMutI	CAGTG	9 cut(s)	958, 1171, 1521, 1603, 2058, 2121, 2271, 2324, 2604
BveI	ACCTGC	1 cut(s)	2439
CciI	TCATGA	3 cut(s)	579, 1222, 2494
CciNI	GCGGCCGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	6 cut(s)	344, 377, 625, 646, 1765, 2249
CseI	GACGC	3 cut(s)	257, 407, 570
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
DraI	TTTAAA	1 cut(s)	1132
EaeI	YGGCCR	2 cut(s)	448, 1783
EagI	CGGCCG	1 cut(s)	448
Eam1104I	CTCTTC	6 cut(s)	27, 496, 1827, 2079, 2118, 2426
EarI	CTCTTC	6 cut(s)	27, 496, 1827, 2079, 2118, 2426
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	3 cut(s)	928, 1360, 1768
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	664
Eco32I	GATATC	2 cut(s)	240, 2035
Eco47I	GGWCC	5 cut(s)	377, 625, 646, 1765, 2249
Eco52I	CGGCCG	1 cut(s)	448
Eco57I	CTGAAG	5 cut(s)	828, 1727, 2060, 2355, 2450
EcoO109I	RGGNCCY	2 cut(s)	377, 646
EcoRII	CCWGG	3 cut(s)	356, 627, 1563
EcoRV	GATATC	2 cut(s)	240, 2035
EcoT14I	CCWWGG	3 cut(s)	928, 1360, 1768
EcoT22I	ATGCAT	1 cut(s)	2105
ErhI	CCWWGG	3 cut(s)	928, 1360, 1768
Esp3I	CGTCTC	2 cut(s)	172, 425
FalI	AAGNNNNNCTT	4 cut(s)	743, 775, 826, 858
FaqI	GGGAC	4 cut(s)	886, 1557, 1568, 2337
FauI	CCCGC	1 cut(s)	2276
FauNDI	CATATG	1 cut(s)	2704
FbaI	TGATCA	1 cut(s)	1690
FblI	GTMKAC	1 cut(s)	408
FokI	GGATG	4 cut(s)	41, 1812, 2099, 2408
GlaI	GCGC	1 cut(s)	1049
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	7 cut(s)	211, 282, 346, 450, 1285, 1365, 1785
HapII	CCGG	5 cut(s)	26, 530, 1101, 1552, 2722
HgaI	GACGC	3 cut(s)	257, 407, 570
HhaI	GCGC	1 cut(s)	1050
Hin1I	GRCGYC	2 cut(s)	165, 249
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HincII	GTYRAC	1 cut(s)	2482
HindII	GTYRAC	1 cut(s)	2482
HindIII	AAGCTT	4 cut(s)	757, 1088, 2189, 2618
HpaII	CCGG	5 cut(s)	26, 530, 1101, 1552, 2722
HphI	GGTGA	5 cut(s)	1064, 2000, 2029, 2658, 2786
Hpy166II	GTNNAC	6 cut(s)	145, 409, 1455, 1753, 2292, 2482
Hpy188I	TCNGA	5 cut(s)	172, 232, 244, 1233, 2430
Hpy8I	GTNNAC	6 cut(s)	145, 409, 1455, 1753, 2292, 2482
Hpy99I	CGWCG	5 cut(s)	167, 248, 251, 1352, 1761
HpyAV	CCTTC	6 cut(s)	106, 272, 390, 756, 1435, 2154
HpyCH4IV	ACGT	4 cut(s)	165, 1546, 1866, 2314
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 71, 436, 1054, 1151, 1581, 1949, 1958
HpySE526I	ACGT	4 cut(s)	165, 1546, 1866, 2314
Hsp92I	GRCGYC	2 cut(s)	165, 249
HspAI	GCGC	1 cut(s)	1048
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	1690
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	4 cut(s)	12, 303, 1123, 2365
Lsp1109I	GCAGC	6 cut(s)	27, 52, 712, 1687, 2683, 2711
LweI	GCATC	5 cut(s)	598, 806, 1261, 1970, 2159
MaeII	ACGT	4 cut(s)	165, 1546, 1866, 2314
MbiI	CCGCTC	2 cut(s)	453, 2368
MfeI	CAATTG	2 cut(s)	425, 483
MflI	RGATCY	4 cut(s)	707, 1228, 1946, 2392
MhlI	GDGCHC	2 cut(s)	441, 1099
MlsI	TGGCCA	1 cut(s)	1785
MluCI	AATT	8 cut(s)	226, 425, 483, 854, 1076, 1160, 2017, 2512
MluNI	TGGCCA	1 cut(s)	1785
MlyI	GAGTC	3 cut(s)	31, 372, 2766
MmeI	TCCRAC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	1785
Mph1103I	ATGCAT	1 cut(s)	2105
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	2 cut(s)	2307, 2435
MscI	TGGCCA	1 cut(s)	1785
MseI	TTAA	3 cut(s)	1131, 1661, 2241
MslI	CAYNNNNRTG	2 cut(s)	392, 1798
Msp20I	TGGCCA	1 cut(s)	1785
MspA1I	CMGCKG	1 cut(s)	2696
MspI	CCGG	5 cut(s)	26, 530, 1101, 1552, 2722
MspR9I	CCNGG	7 cut(s)	358, 530, 629, 1101, 1553, 1565, 2723
MunI	CAATTG	2 cut(s)	425, 483
Mva1269I	GAATGC	1 cut(s)	1067
MvaI	CCWGG	3 cut(s)	358, 629, 1565
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	8 cut(s)	65, 71, 436, 1054, 1151, 1581, 1949, 1958
NciI	CCSGG	4 cut(s)	530, 1101, 1553, 2723
NdeI	CATATG	1 cut(s)	2704
NheI	GCTAGC	2 cut(s)	1057, 1580
NlaIV	GGNNCC	4 cut(s)	317, 438, 1098, 2331
NmuCI	GTSAC	3 cut(s)	284, 2181, 2774
NotI	GCGGCCGC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	2105
NspI	RCATGY	4 cut(s)	575, 1494, 1998, 2103
PaeI	GCATGC	2 cut(s)	1494, 2103
PagI	TCATGA	3 cut(s)	579, 1222, 2494
PceI	AGGCCT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	1067
PdmI	GAANNNNTTC	2 cut(s)	2307, 2435
PfeI	GAWTC	7 cut(s)	191, 1184, 1234, 1337, 1636, 2003, 2738
PflMI	CCANNNNNTGG	1 cut(s)	2218
PleI	GAGTC	3 cut(s)	30, 371, 2765
PpsI	GAGTC	3 cut(s)	30, 371, 2765
Ppu21I	YACGTR	1 cut(s)	2315
PpuMI	RGGWCCY	2 cut(s)	377, 646
PshBI	ATTAAT	1 cut(s)	1661
Psp5II	RGGWCCY	2 cut(s)	377, 646
Psp6I	CCWGG	3 cut(s)	356, 627, 1563
PspGI	CCWGG	3 cut(s)	356, 627, 1563
PspN4I	GGNNCC	4 cut(s)	317, 438, 1098, 2331
PspPI	GGNCC	6 cut(s)	344, 377, 625, 646, 1765, 2249
PspPPI	RGGWCCY	2 cut(s)	377, 646
PsrI	GAACNNNNNNTAC	2 cut(s)	880, 912
PstI	CTGCAG	2 cut(s)	1452, 2701
PsuI	RGATCY	4 cut(s)	707, 1228, 1946, 2392
PvuII	CAGCTG	1 cut(s)	2696
RseI	CAYNNNNRTG	2 cut(s)	392, 1798
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	1131, 1661, 2241
Sau96I	GGNCC	6 cut(s)	344, 377, 625, 646, 1765, 2249
SchI	GAGTC	3 cut(s)	31, 372, 2766
ScrFI	CCNGG	7 cut(s)	358, 530, 629, 1101, 1553, 1565, 2723
SduI	GDGCHC	2 cut(s)	441, 1099
SfaNI	GCATC	5 cut(s)	598, 806, 1261, 1970, 2159
SfcI	CTRYAG	2 cut(s)	1448, 2697
SinI	GGWCC	5 cut(s)	377, 625, 646, 1765, 2249
SmiMI	CAYNNNNRTG	2 cut(s)	392, 1798
SpeI	ACTAGT	2 cut(s)	1775, 2164
SphI	GCATGC	2 cut(s)	1494, 2103
Sse9I	AATT	8 cut(s)	226, 425, 483, 854, 1076, 1160, 2017, 2512
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	8 cut(s)	447, 451, 1050, 1084, 1958, 2007, 2269, 2368
SspI	AATATT	2 cut(s)	1310, 1665
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	7 cut(s)	356, 528, 627, 1099, 1551, 1563, 2721
StyI	CCWWGG	3 cut(s)	928, 1360, 1768
TaiI	ACGT	4 cut(s)	168, 1549, 1869, 2317
TaqI	TCGA	4 cut(s)	455, 764, 1123, 1350
TaqII	GACCGA	2 cut(s)	599, 688
TasI	AATT	8 cut(s)	226, 425, 483, 854, 1076, 1160, 2017, 2512
TatI	WGTACW	4 cut(s)	887, 1997, 2289, 2707
TauI	GCSGC	4 cut(s)	450, 453, 1961, 2371
TfiI	GAWTC	7 cut(s)	191, 1184, 1234, 1337, 1636, 2003, 2738
Tru1I	TTAA	3 cut(s)	1131, 1661, 2241
Tru9I	TTAA	3 cut(s)	1131, 1661, 2241
TscAI	CASTG	9 cut(s)	958, 1171, 1528, 1603, 2058, 2121, 2278, 2331, 2611
TseFI	GTSAC	3 cut(s)	284, 2181, 2774
TseI	GCWGC	6 cut(s)	15, 65, 725, 1700, 2696, 2699
Tsp45I	GTSAC	3 cut(s)	284, 2181, 2774
TspRI	CASTG	9 cut(s)	958, 1171, 1528, 1603, 2058, 2121, 2278, 2331, 2611
Van91I	CCANNNNNTGG	1 cut(s)	2218
VpaK11BI	GGWCC	5 cut(s)	377, 625, 646, 1765, 2249
VspI	ATTAAT	1 cut(s)	1661
XceI	RCATGY	4 cut(s)	575, 1494, 1998, 2103
XmaJI	CCTAGG	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	2 cut(s)	2307, 2435
ZraI	GACGTC	1 cut(s)	166
Zsp2I	ATGCAT	1 cut(s)	2105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.