Rmu_sc0000230.1_g000003

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000230.1
OG0019216
Physical Location & Seq
Reverse (-)
15414 .. 16294
881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
atggagactagtggagtagtggagcatatgaagccaactggaaatgaagcaagcgagtcctctcatattgcacagagtactaagttcaaattctattggctgaaaatgagcacttgtctattacacaaaaacactcgctacaatttcagcatctctcgaatggcttcttcagcaatggctctctcctccccttccctagctggccaagctgtgaagctcagttcctccatatctaatttcctcggtgagggccgaattaccatgcgcaaaaccgcagccaagtccaaaatcgtatcatctggcagcccatggtacggtgcagaccgtgttaagtatttgggcccattcttcggtgaggccccatcttccctcatcggagagtttcctgggattacgcccgctatggagtcaacttcggctaggctgtttggttcagggccggagcctagatatttagcgagggtcatcttgatgggcgcggttgaaggctatagaattgcccgtgggcctcttggtaaggtggtagacccattgtaccctggagggagctttgaccgattaggacttgctgaagatccagaggcatctgcagaacttaaggtgaaggagctaaagaatgggagattagccatgttttctatgttcgggtttttcgtgcaagccattgtcactagaaagggaccaatcgaaaaacctcgccgaccatttggctga

Protein Analysis

237

Amino Acids

25.7

Weight (kDa)

9.89

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 151 - 222 1.8e-18 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019216)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37620
rosa_chinensis RchiOBHm_Chr5g0067741
rosa_multiflora Rmu_sc0000230.1_g000003
rosa_roxburghii Rroxscaffold_1G00013520 Rroxscaffold_2G00104610
rosa_samantha Rh3CG308600 Rh5AG445100 Rh5DG476400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 479
AciI CCGC 3 cut(s) 273, 399, 479
AclWI GGATC 1 cut(s) 569
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 2 cut(s) 153, 591
AfaI GTAC 3 cut(s) 79, 314, 536
AfiI CCNNNNNNNGG 3 cut(s) 247, 314, 350
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 2 cut(s) 88, 485
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 385, 538
AluBI AGCT 5 cut(s) 200, 209, 217, 549, 610
AluI AGCT 5 cut(s) 200, 209, 217, 549, 610
Alw21I GWGCWC 1 cut(s) 113
AlwI GGATC 1 cut(s) 569
AoxI GGCC 6 cut(s) 202, 250, 340, 357, 437, 506
ApaI GGGCCC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 275, 303
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 163
AspLEI GCGC 2 cut(s) 267, 479
AspS9I GGNCC 7 cut(s) 250, 340, 341, 358, 437, 506, 680
AsuHPI GGTGA 3 cut(s) 257, 365, 613
AvaII GGWCC 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 344
BalI TGGCCA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 287, 315
BccI CCATC 2 cut(s) 370, 466
BciT130I CCWGG 2 cut(s) 387, 540
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 5 cut(s) 9, 197, 420, 447, 672
BfmI CTRYAG 2 cut(s) 490, 588
BfrI CTTAAG 1 cut(s) 596
BisI GCNGC 2 cut(s) 276, 304
BlsI GCNGC 2 cut(s) 277, 305
BmcAI AGTACT 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 387, 540
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 7 cut(s) 250, 340, 341, 358, 437, 506, 680
BmiI GGNNCC 4 cut(s) 342, 360, 444, 681
BmrFI CCNGG 2 cut(s) 387, 540
BmsI GCATC 2 cut(s) 159, 593
BpmI CTGGAG 1 cut(s) 561
BsaJI CCNNGG 5 cut(s) 241, 308, 386, 502, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 314, 350
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 387, 540
BseDI CCNNGG 5 cut(s) 241, 308, 386, 502, 538
BseLI CCNNNNNNNGG 3 cut(s) 247, 314, 350
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 2 cut(s) 287, 315
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 6 cut(s) 204, 252, 342, 359, 439, 508
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 3 cut(s) 247, 314, 350
BsmFI GGGAC 1 cut(s) 693
BsnI GGCC 6 cut(s) 204, 252, 342, 359, 439, 508
Bsp120I GGGCCC 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 113, 344
Bsp143I GATC 1 cut(s) 574
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 3 cut(s) 273, 399, 479
BspANI GGCC 6 cut(s) 204, 252, 342, 359, 439, 508
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 4 cut(s) 342, 360, 444, 681
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 5 cut(s) 241, 308, 386, 502, 538
BssMI GATC 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 387, 540
Bst4CI ACNGT 2 cut(s) 317, 326
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 4 cut(s) 52, 202, 399, 660
BstDEI CTNAG 2 cut(s) 81, 218
BstDSI CCRYGG 2 cut(s) 308, 502
BstENI CCTNNNNNAGG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 2 cut(s) 267, 479
BstKTI GATC 1 cut(s) 577
BstMBI GATC 1 cut(s) 574
BstMWI GCNNNNNNNGC 3 cut(s) 31, 170, 206
BstNI CCWGG 2 cut(s) 387, 540
BstSCI CCNGG 2 cut(s) 385, 538
BstSFI CTRYAG 2 cut(s) 490, 588
BstSLI GKGCMC 1 cut(s) 344
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 287, 315
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 6 cut(s) 204, 252, 342, 359, 439, 508
BtgI CCRYGG 2 cut(s) 308, 502
Cac8I GCNNGC 4 cut(s) 52, 202, 399, 660
CfoI GCGC 2 cut(s) 267, 479
Cfr13I GGNCC 7 cut(s) 250, 340, 341, 358, 437, 506, 680
Csp6I GTAC 3 cut(s) 78, 313, 535
CviAII CATG 3 cut(s) 262, 309, 631
CviQI GTAC 3 cut(s) 78, 313, 535
DdeI CTNAG 2 cut(s) 81, 218
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 153, 591
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 385, 538
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 3 cut(s) 265, 312, 634
FaqI GGGAC 1 cut(s) 693
FatI CATG 3 cut(s) 261, 308, 630
FauI CCCGC 1 cut(s) 406
FauNDI CATATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 276, 304
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 276, 304
FspBI CTAG 5 cut(s) 9, 197, 420, 447, 672
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 2 cut(s) 266, 478
GluI GCNGC 2 cut(s) 276, 304
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 6 cut(s) 204, 252, 342, 359, 439, 508
HapII CCGG 1 cut(s) 440
HhaI GCGC 2 cut(s) 267, 479
Hin1II CATG 3 cut(s) 265, 312, 634
Hin6I GCGC 2 cut(s) 265, 477
HinP1I GCGC 2 cut(s) 265, 477
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 2 cut(s) 56, 407
HpaII CCGG 1 cut(s) 440
HphI GGTGA 3 cut(s) 257, 365, 613
Hpy166II GTNNAC 2 cut(s) 411, 526
Hpy188I TCNGA 1 cut(s) 377
Hpy188III TCNNGA 3 cut(s) 156, 469, 578
Hpy8I GTNNAC 2 cut(s) 411, 526
HpyAV CCTTC 3 cut(s) 201, 479, 598
HpyCH4III ACNGT 2 cut(s) 317, 326
HpyCH4V TGCA 4 cut(s) 71, 320, 590, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 170, 206
HpyF3I CTNAG 2 cut(s) 81, 218
Hsp92II CATG 3 cut(s) 265, 312, 634
HspAI GCGC 2 cut(s) 265, 477
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 4 cut(s) 22, 442, 546, 607
Lsp1109I GCAGC 2 cut(s) 287, 315
LweI GCATC 2 cut(s) 159, 593
MaeI CTAG 5 cut(s) 9, 197, 420, 447, 672
MaeIII GTNAC 1 cut(s) 667
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 4 cut(s) 159, 340, 357, 584
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 2 cut(s) 113, 344
MlsI TGGCCA 1 cut(s) 204
MluCI AATT 5 cut(s) 89, 142, 235, 255, 495
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 2 cut(s) 65, 416
Mox20I TGGCCA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 163
MscI TGGCCA 1 cut(s) 204
MseI TTAA 2 cut(s) 330, 597
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 387, 540
MvaI CCWGG 2 cut(s) 387, 540
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 31, 170, 206
NcoI CCATGG 1 cut(s) 308
NdeI CATATG 1 cut(s) 27
NdeII GATC 1 cut(s) 574
NlaIII CATG 3 cut(s) 265, 312, 634
NlaIV GGNNCC 4 cut(s) 342, 360, 444, 681
NmuCI GTSAC 1 cut(s) 667
NsbI TGCGCA 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 277, 305
PleI GAGTC 2 cut(s) 64, 415
PpsI GAGTC 2 cut(s) 64, 415
Psp6I CCWGG 2 cut(s) 385, 538
PspGI CCWGG 2 cut(s) 385, 538
PspN4I GGNNCC 4 cut(s) 342, 360, 444, 681
PspOMI GGGCCC 1 cut(s) 340
PspPI GGNCC 7 cut(s) 250, 340, 341, 358, 437, 506, 680
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 79, 314, 536
RsaNI GTAC 3 cut(s) 78, 313, 535
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 2 cut(s) 330, 597
SatI GCNGC 2 cut(s) 276, 304
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 7 cut(s) 250, 340, 341, 358, 437, 506, 680
ScaI AGTACT 1 cut(s) 79
SchI GAGTC 2 cut(s) 65, 416
ScrFI CCNGG 2 cut(s) 387, 540
SduI GDGCHC 2 cut(s) 113, 344
SetI ASST 8 cut(s) 202, 211, 219, 522, 551, 603, 612, 697
SfaNI GCATC 2 cut(s) 159, 593
SfcI CTRYAG 2 cut(s) 490, 588
SinI GGWCC 1 cut(s) 680
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 5 cut(s) 89, 142, 235, 255, 495
SsiI CCGC 3 cut(s) 273, 399, 479
SspMI CTAG 5 cut(s) 9, 197, 420, 447, 672
StyD4I CCNGG 2 cut(s) 385, 538
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 317, 326
TaqI TCGA 2 cut(s) 157, 687
TaqII GACCGA 1 cut(s) 570
TasI AATT 5 cut(s) 89, 142, 235, 255, 495
TatI WGTACW 1 cut(s) 77
Tru1I TTAA 2 cut(s) 330, 597
Tru9I TTAA 2 cut(s) 330, 597
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 2 cut(s) 275, 303
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 2 cut(s) 44, 60
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 5 cut(s) 9, 197, 420, 447, 672
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.