Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000260.1

Orthogroup ID

OG0016477

Physical Location & Seq

Genomic Coordinates Forward (+)

119112 .. 121988

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgttgcagcttatccatattggcagattgcttccttctccatccctcctggtaatcctcaagggtggaagagtacacatctccgacccgagaacccgtccgacatcccagtacccgccaggtgtaccacacttatcgttaaacgaacggatccagcttcgccacgtgtcgcggcgcagcataattaccccgcggatccaacggaccccaacaactcttctccaaaagtctcgaacttcaacgcaacgcagcgcagccgctcctccagagaccccggaaaaagaatctccgatggccgactcggacaacgactccggcggccacaacggccactcgcagggaggggagctgtcggcgcgtgagcaggaccggttcctgccgatcgcgaacgtgagccgcatcatgaagaaggcattaccggccaacgccaagatctccaaggacgcgaaggagaccgtccaggagtgcgtctccgagttcatcagcttcgtcaccggcgaggcatccgacaagtgccagcgcgagaagcgcaagacgatcaacggcgacgatttgctctgggccatgaccaccttgggattcgaggagtacgtcgagccgctcaagatctatctccagaagtaccgcgagatggaaggagagaaaggcgccgtcggaaccgccggaagagacaaggaaggcggctccggaggcggaggatcggctgctggaggcggcggcggaagcggaggcggattgagctccgggacgagcggcggcggcggcggcgcgtttaatggggtttatggtgggatggggatgttgggtcatcatcagggacacgtgtacggctcaggtgggtatcaacatcaaatggggataggggagaagcgcggtggttccggcggtggagcttcagtgaggtcaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

303

Amino Acids

31.9

Weight (kDa)

9.58

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	125 - 189	3e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14540
fragaria_vesca	FvH4_6g40600
malus_domestica	MD09G1126900.v1.1
prunus_persica	Prupe.3G197300_v2.0.a1
pyrus_communis	pycom09g05110
rosa_chinensis	RchiOBHm_Chr2g0155961
rosa_laevigata	RLG00000020878
rosa_multiflora	Rmu_sc0000260.1_g000028
rosa_rugosa	Rorug02G0450900
rosa_samantha	Rh2AG517500 Rh2BG528800 Rh2CG502200 Rh2DG537900
rosa_wichuraiana	Rw2G042610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	647
AccBSI	CCGCTC	3 cut(s)	260, 601, 753
AccII	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
AccIII	TCCGGA	1 cut(s)	686
AclWI	GGATC	5 cut(s)	145, 158, 190, 203, 706
AcoI	YGGCCR	4 cut(s)	294, 319, 328, 420
AcuI	CTGAAG	1 cut(s)	879
AcvI	CACGTG	2 cut(s)	166, 823
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	6 cut(s)	75, 113, 126, 590, 623, 827
AfiI	CCNNNNNNNGG	2 cut(s)	337, 631
AflIII	ACRYGT	3 cut(s)	165, 820, 822
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	3 cut(s)	48, 118, 459
AluBI	AGCT	6 cut(s)	10, 157, 349, 486, 741, 893
AluI	AGCT	6 cut(s)	10, 157, 349, 486, 741, 893
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	5 cut(s)	234, 263, 446, 475, 663
AlwI	GGATC	5 cut(s)	145, 158, 190, 203, 706
Ama87I	CYCGRG	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	686
AoxI	GGCC	5 cut(s)	294, 319, 328, 420, 561
ApeKI	GCWGC	5 cut(s)	7, 177, 249, 254, 704
AsiGI	ACCGGT	1 cut(s)	369
AspLEI	GCGC	8 cut(s)	177, 254, 358, 522, 531, 650, 770, 873
AspS9I	GGNCC	3 cut(s)	204, 367, 561
AsuC2I	CCSGG	2 cut(s)	275, 745
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	204, 367
BamHI	GGATCC	2 cut(s)	150, 195
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	743
BbrPI	CACGTG	2 cut(s)	166, 823
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	5 cut(s)	19, 189, 261, 266, 691
BccI	CCATC	4 cut(s)	49, 286, 625, 787
BceAI	ACGGC	4 cut(s)	343, 559, 635, 844
BciT130I	CCWGG	3 cut(s)	50, 120, 461
BcnI	CCSGG	2 cut(s)	275, 745
BcoDI	GTCTC	5 cut(s)	234, 263, 446, 475, 663
BfoI	RGCGCY	1 cut(s)	651
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	2 cut(s)	432, 606
Bme1390I	CCNGG	5 cut(s)	50, 120, 275, 461, 745
Bme18I	GGWCC	2 cut(s)	204, 367
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	204, 367, 561
BmiI	GGNNCC	8 cut(s)	152, 197, 206, 374, 649, 658, 685, 880
BmrFI	CCNGG	5 cut(s)	50, 120, 275, 461, 745
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	408, 512
BmuI	ACTGGG	1 cut(s)	103
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	3 cut(s)	249, 599, 729
Bpu10I	CCTNAGC	1 cut(s)	832
BpuEI	CTTGAG	2 cut(s)	44, 587
BpuMI	CCSGG	2 cut(s)	275, 745
BsaAI	YACGTR	2 cut(s)	166, 823
BsaHI	GRCGYC	1 cut(s)	648
BsaI	GGTCTC	2 cut(s)	263, 446
BsaJI	CCNNGG	4 cut(s)	191, 273, 438, 573
BsaWI	WCCGGW	2 cut(s)	369, 686
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 882, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 631
Bse118I	RCCGGY	3 cut(s)	369, 418, 494
Bse1I	ACTGG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	686
BseBI	CCWGG	3 cut(s)	50, 120, 461
BseDI	CCNNGG	4 cut(s)	191, 273, 438, 573
BseGI	GGATG	5 cut(s)	41, 104, 503, 798, 804
BseLI	CCNNNNNNNGG	2 cut(s)	337, 631
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	252, 599
BseXI	GCAGC	5 cut(s)	19, 189, 261, 266, 691
Bsh1236I	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	5 cut(s)	296, 321, 330, 422, 563
BshNI	GGYRCC	1 cut(s)	647
BshTI	ACCGGT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	9 cut(s)	275, 315, 370, 419, 495, 663, 687, 744, 882
BslFI	GGGAC	2 cut(s)	760, 831
BslI	CCNNNNNNNGG	2 cut(s)	337, 631
BsmAI	GTCTC	5 cut(s)	234, 263, 446, 475, 663
BsmBI	CGTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	760, 831
BsnI	GGCC	5 cut(s)	296, 321, 330, 422, 563
Bso31I	GGTCTC	2 cut(s)	263, 446
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
Bsp68I	TCGCGA	1 cut(s)	386
BspANI	GGCC	5 cut(s)	296, 321, 330, 422, 563
BspCNI	CTCAG	1 cut(s)	845
BspEI	TCCGGA	1 cut(s)	686
BspFNI	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	8 cut(s)	152, 197, 206, 374, 649, 658, 685, 880
BspPI	GGATC	5 cut(s)	145, 158, 190, 203, 706
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	2 cut(s)	263, 446
BsrBI	CCGCTC	3 cut(s)	260, 601, 753
BsrFI	RCCGGY	3 cut(s)	369, 418, 494
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	3 cut(s)	369, 418, 494
BssECI	CCNNGG	4 cut(s)	191, 273, 438, 573
BssMI	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
BssNI	GRCGYC	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	438, 573
Bst2UI	CCWGG	3 cut(s)	50, 120, 461
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	3 cut(s)	64, 222, 661
BstACI	GRCGYC	1 cut(s)	648
BstBAI	YACGTR	2 cut(s)	166, 823
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	832
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	41, 104, 503, 798, 804
BstFNI	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	8 cut(s)	177, 254, 358, 522, 531, 650, 770, 873
BstKTI	GATC	7 cut(s)	153, 198, 384, 435, 540, 609, 701
BstMAI	GTCTC	5 cut(s)	234, 263, 446, 475, 663
BstMBI	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
BstMCI	CGRYCG	1 cut(s)	384
BstNI	CCWGG	3 cut(s)	50, 120, 461
BstSCI	CCNGG	5 cut(s)	48, 118, 273, 459, 743
BstUI	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
BstV1I	GCAGC	5 cut(s)	19, 189, 261, 266, 691
BstX2I	RGATCY	4 cut(s)	150, 195, 432, 606
BstYI	RGATCY	4 cut(s)	150, 195, 432, 606
BsuRI	GGCC	5 cut(s)	296, 321, 330, 422, 563
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	5 cut(s)	41, 104, 503, 798, 804
BtsIMutI	CAGTG	1 cut(s)	903
BtuMI	TCGCGA	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	518
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	8 cut(s)	177, 254, 358, 522, 531, 650, 770, 873
Cfr10I	RCCGGY	3 cut(s)	369, 418, 494
Cfr13I	GGNCC	3 cut(s)	204, 367, 561
Cfr42I	CCGCGG	1 cut(s)	194
CseI	GACGC	2 cut(s)	452, 457
Csp6I	GTAC	6 cut(s)	74, 112, 125, 589, 622, 826
CspAI	ACCGGT	1 cut(s)	369
CviAII	CATG	2 cut(s)	403, 565
CviQI	GTAC	6 cut(s)	74, 112, 125, 589, 622, 826
DdeI	CTNAG	1 cut(s)	832
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	7 cut(s)	152, 197, 383, 434, 539, 608, 700
DpnII	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
EaeI	YGGCCR	4 cut(s)	294, 319, 328, 420
Eam1104I	CTCTTC	3 cut(s)	64, 222, 661
EarI	CTCTTC	3 cut(s)	64, 222, 661
EciI	GGCGGA	3 cut(s)	708, 735, 747
Ecl136II	GAGCTC	1 cut(s)	741
Eco130I	CCWWGG	2 cut(s)	438, 573
Eco24I	GRGCYC	1 cut(s)	743
Eco31I	GGTCTC	2 cut(s)	263, 446
Eco47I	GGWCC	2 cut(s)	204, 367
Eco53kI	GAGCTC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	879
Eco72I	CACGTG	2 cut(s)	166, 823
Eco88I	CYCGRG	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	741
EcoRII	CCWGG	3 cut(s)	48, 118, 459
EcoT14I	CCWWGG	2 cut(s)	438, 573
EcoT38I	GRGCYC	1 cut(s)	743
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
ErhI	CCWWGG	2 cut(s)	438, 573
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	406, 568
FaiI	YATR	5 cut(s)	18, 182, 404, 566, 786
FaqI	GGGAC	2 cut(s)	760, 831
FatI	CATG	2 cut(s)	402, 564
FauI	CCCGC	2 cut(s)	123, 198
FokI	GGATG	5 cut(s)	28, 91, 490, 805, 811
FriOI	GRGCYC	1 cut(s)	743
GlaI	GCGC	8 cut(s)	176, 253, 357, 521, 530, 649, 769, 872
GsuI	CTGGAG	3 cut(s)	249, 599, 729
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	296, 321, 330, 422, 563
HapII	CCGG	9 cut(s)	275, 315, 370, 419, 495, 663, 687, 744, 882
HgaI	GACGC	2 cut(s)	452, 457
HhaI	GCGC	8 cut(s)	177, 254, 358, 522, 531, 650, 770, 873
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	406, 568
Hin6I	GCGC	8 cut(s)	175, 252, 356, 520, 529, 648, 768, 871
HinP1I	GCGC	8 cut(s)	175, 252, 356, 520, 529, 648, 768, 871
HinfI	GANTC	4 cut(s)	284, 299, 311, 579
HpaII	CCGG	9 cut(s)	275, 315, 370, 419, 495, 663, 687, 744, 882
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	3 cut(s)	76, 125, 826
Hpy188I	TCNGA	7 cut(s)	85, 102, 291, 304, 475, 508, 656
Hpy188III	TCNNGA	7 cut(s)	231, 266, 385, 403, 604, 616, 687
Hpy8I	GTNNAC	3 cut(s)	76, 125, 826
Hpy99I	CGWCG	3 cut(s)	551, 596, 656
HpyAV	CCTTC	5 cut(s)	45, 403, 442, 629, 671
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	4 cut(s)	165, 390, 591, 822
HpyCH4V	TGCA	1 cut(s)	7
HpyF3I	CTNAG	1 cut(s)	832
HpySE526I	ACGT	4 cut(s)	165, 390, 591, 822
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	2 cut(s)	406, 568
HspAI	GCGC	8 cut(s)	175, 252, 356, 520, 529, 648, 768, 871
KasI	GGCGCC	1 cut(s)	647
Kpn2I	TCCGGA	1 cut(s)	686
KspI	CCGCGG	1 cut(s)	194
Kzo9I	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
LmnI	GCTCC	5 cut(s)	265, 346, 689, 746, 890
Lsp1109I	GCAGC	5 cut(s)	19, 189, 261, 266, 691
LweI	GCATC	2 cut(s)	408, 512
MaeII	ACGT	4 cut(s)	165, 390, 591, 822
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	7 cut(s)	152, 197, 383, 434, 539, 608, 700
MbiI	CCGCTC	3 cut(s)	260, 601, 753
MboI	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
MboII	GAAGA	4 cut(s)	81, 209, 418, 678
MflI	RGATCY	4 cut(s)	150, 195, 432, 606
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	293, 305
MmeI	TCCRAC	5 cut(s)	108, 125, 223, 531, 634
MroI	TCCGGA	1 cut(s)	686
MseI	TTAA	2 cut(s)	140, 774
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	9 cut(s)	275, 315, 370, 419, 495, 663, 687, 744, 882
MspR9I	CCNGG	5 cut(s)	50, 120, 275, 461, 745
MvaI	CCWGG	3 cut(s)	50, 120, 461
MvnI	CGCG	9 cut(s)	172, 193, 358, 386, 446, 522, 627, 770, 873
NarI	GGCGCC	1 cut(s)	648
NciI	CCSGG	2 cut(s)	275, 745
NdeII	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
NlaIII	CATG	2 cut(s)	406, 568
NlaIV	GGNNCC	8 cut(s)	152, 197, 206, 374, 649, 658, 685, 880
NmuCI	GTSAC	1 cut(s)	490
NruI	TCGCGA	1 cut(s)	386
PagI	TCATGA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	495, 588
PfeI	GAWTC	2 cut(s)	284, 579
PfoI	TCCNGGA	2 cut(s)	459, 743
PinAI	ACCGGT	1 cut(s)	369
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	2 cut(s)	293, 305
PluTI	GGCGCC	1 cut(s)	651
PmaCI	CACGTG	2 cut(s)	166, 823
PmlI	CACGTG	2 cut(s)	166, 823
PpsI	GAGTC	2 cut(s)	293, 305
Ppu21I	YACGTR	2 cut(s)	166, 823
Psp124BI	GAGCTC	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	48, 118, 459
PspCI	CACGTG	2 cut(s)	166, 823
PspGI	CCWGG	3 cut(s)	48, 118, 459
PspN4I	GGNNCC	8 cut(s)	152, 197, 206, 374, 649, 658, 685, 880
PspPI	GGNCC	3 cut(s)	204, 367, 561
PsuI	RGATCY	4 cut(s)	150, 195, 432, 606
PvuI	CGATCG	1 cut(s)	384
RruI	TCGCGA	1 cut(s)	386
RsaI	GTAC	6 cut(s)	75, 113, 126, 590, 623, 827
RsaNI	GTAC	6 cut(s)	74, 112, 125, 589, 622, 826
SacI	GAGCTC	1 cut(s)	743
SacII	CCGCGG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	140, 774
Sau3AI	GATC	7 cut(s)	150, 195, 381, 432, 537, 606, 698
Sau96I	GGNCC	3 cut(s)	204, 367, 561
SchI	GAGTC	2 cut(s)	293, 305
ScrFI	CCNGG	5 cut(s)	50, 120, 275, 461, 745
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	2 cut(s)	408, 512
SfiI	GGCCNNNNNGGCC	1 cut(s)	327
SfoI	GGCGCC	1 cut(s)	649
Sfr303I	CCGCGG	1 cut(s)	194
SgrAI	CRCCGGYG	1 cut(s)	494
SgrBI	CCGCGG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	204, 367
SmlI	CTYRAG	2 cut(s)	59, 602
SmoI	CTYRAG	2 cut(s)	59, 602
Sse9I	AATT	1 cut(s)	183
SspDI	GGCGCC	1 cut(s)	647
SstI	GAGCTC	1 cut(s)	743
StyD4I	CCNGG	5 cut(s)	48, 118, 273, 459, 743
StyI	CCWWGG	2 cut(s)	438, 573
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	4 cut(s)	168, 393, 594, 825
TaqI	TCGA	3 cut(s)	232, 582, 594
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	284, 579
Tru1I	TTAA	2 cut(s)	140, 774
Tru9I	TTAA	2 cut(s)	140, 774
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	5 cut(s)	7, 177, 249, 254, 704
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	419, 469
TspGWI	ACGGA	2 cut(s)	163, 217
TspRI	CASTG	1 cut(s)	903
VpaK11BI	GGWCC	2 cut(s)	204, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.