Rmu_sc0000338.1_g000024

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000338.1
OG0019507
Physical Location & Seq
Forward (+)
84532 .. 87599
3068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000338.1_g000024.1.cds

Sequence Viewer

Length: 1548 bp
atggccttggacaccccaacagcctctcctactcttcccacatcagctcctcagtggaagtatggtgtatttttgcatttcaatgggatagacagtgctgcccggcgttttacatcttatttagacaatgagttgcaagtaaagcaaatcaaaacattcaacaaggaaaaccgagaggatcgtgatacagaaactgggagtatcatagaggaaattaaagggagtattatagcggcaattaaagaatcaaggtttgcaatcatcgttctctcgaacagctatgctcattctagaagatgtttggaggaactcacacagattgttcagtgcatggaaaacaaggaaacaataattctgccagttttttacgaggtggatcctagtgatgtgcgaaatgaaaggaagagttttaaagatgccttcggtatacatcaagagaggcttggatttgaaatgaagagggtgatgcagtggagagaggctttaaggaaagtgggcaacatctttggttgggtttcaattgattttaagtctgaaagagaacttgtccatcaaattgtgcaatttgtcagtaagcctattgaaattgactcgaccgtagatattgatataacaagacaagctatggaccgaactgttgttttcaatggccttgatcaacctaaaagacgacctgtacatcgcttccttgagctaaaatcagctcctcgttggaagtatgatgtgtttttaaatttcaggggtgaggacactcgtaagggttttctgtcccatttacgagcagaattgcaaaagacaccagcaaacctgaacatatttaaggatgacgaacaacttgaaaaagggcggaatatgtctccatatctctttaaggccatagaagagtcgaggtttgccatcgttgttctttcgcaaaactttgcttcttctacatggtgcttggaggaactagcaaagatttttgaatgcatgggaaaccaaaatagaattctgccaatcttttatcatgtggatccctctgatgtgcgacatcaagggggaagttttgcaaaagccttctttaaacttgaagaaagaattctgcttcaggatgagaaggtcaagcggtggcgagatgttttatcaatggtgggcagtctctctggatggagttcaaagtactatgagtacgaaagagaacttatcaaagacgttgtgaaagatgtgtgcagtagactagttcagtctacagaatcgacagaagattttgaagcaacaggagatgtcatggatcgaacttgcaaaaagtcctttctcggaaggctagagaagaaccttgtggtgaagttggtgctctcctcgtccacaacgcttgaagaagaagtcaggtcaagggactcccccgacgactgcaccccacggtgctggcacgcctgcgcgcatgctcaaaagagacagtttgcacgccaactggttttggagccaaacacttccaacatcctaaactgtcattacctatataggaatgagccattattatataaaattgaagactgcttaaaaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

515

Amino Acids

59.92

Weight (kDa)

7.15

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019507)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000338.1_g000024 Rmu_sc0004482.1_g000009
rosa_samantha Rh5AG400800 Rh5AG401000 Rh5AG401100 Rh5AG401200 Rh5AG401800 Rh5CG438400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 427, 1213, 1226
AccII CGCG 1 cut(s) 1418
AciI CCGC 3 cut(s) 233, 847, 1105
AclWI GGATC 6 cut(s) 186, 371, 384, 1007, 1020, 1278
AcsI RAATTY 3 cut(s) 733, 987, 1077
AcuI CTGAAG 1 cut(s) 1070
AfaI GTAC 3 cut(s) 678, 1160, 1169
AhlI ACTAGT 1 cut(s) 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 972, 1004
AluBI AGCT 5 cut(s) 47, 279, 623, 694, 704
AluI AGCT 5 cut(s) 47, 279, 623, 694, 704
Alw21I GWGCWC 1 cut(s) 1335
Alw26I GTCTC 3 cut(s) 861, 1142, 1426
AlwI GGATC 6 cut(s) 186, 371, 384, 1007, 1020, 1278
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 3 cut(s) 3, 649, 873
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 733, 987, 1077
Asp700I GAANNNNTTC 1 cut(s) 1077
AspLEI GCGC 2 cut(s) 1418, 1420
AspS9I GGNCC 1 cut(s) 628
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 475, 755, 1333
AvaII GGWCC 1 cut(s) 628
BamHI GGATCC 2 cut(s) 376, 1012
BbsI GAAGAC 1 cut(s) 1536
Bbv12I GWGCWC 1 cut(s) 1335
BbvI GCAGC 1 cut(s) 85
BccI CCATC 3 cut(s) 558, 905, 1140
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 861, 1142, 1426
BcuI ACTAGT 1 cut(s) 1216
BfaI CTAG 5 cut(s) 291, 381, 950, 1217, 1304
BfmI CTRYAG 1 cut(s) 1227
BisI GCNGC 2 cut(s) 99, 234
BlsI GCNGC 2 cut(s) 100, 235
BmcAI AGTACT 1 cut(s) 1160
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 3 cut(s) 378, 1014, 1461
BmrFI CCNGG 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 406, 456
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 1536
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 6, 1397
BsaXI ACNNNNNCTCC 4 cut(s) 10, 31, 40, 61
Bse1I ACTGG 3 cut(s) 199, 359, 1455
BseDI CCNNGG 2 cut(s) 6, 1397
BseGI GGATG 4 cut(s) 829, 1096, 1151, 1476
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 3 cut(s) 199, 359, 1455
BsePI GCGCGC 1 cut(s) 1416
BseRI GAGGAG 3 cut(s) 39, 696, 1327
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 2 cut(s) 1228, 1375
Bsh1236I CGCG 1 cut(s) 1418
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 3 cut(s) 5, 651, 875
BsiEI CGRYCG 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 1335
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 754, 1388
BsmAI GTCTC 3 cut(s) 861, 1142, 1426
BsmFI GGGAC 2 cut(s) 754, 1388
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 3 cut(s) 5, 651, 875
Bsp1286I GDGCHC 1 cut(s) 1335
Bsp1407I TGTACA 1 cut(s) 676
Bsp143I GATC 5 cut(s) 178, 376, 655, 1012, 1270
BspACI CCGC 3 cut(s) 233, 847, 1105
BspANI GGCC 3 cut(s) 5, 651, 875
BspCNI CTCAG 1 cut(s) 64
BspFNI CGCG 1 cut(s) 1418
BspLI GGNNCC 3 cut(s) 378, 1014, 1461
BspPI GGATC 6 cut(s) 186, 371, 384, 1007, 1020, 1278
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 3 cut(s) 199, 359, 1455
BssECI CCNNGG 2 cut(s) 6, 1397
BssHII GCGCGC 1 cut(s) 1416
BssMI GATC 5 cut(s) 178, 376, 655, 1012, 1270
BssNAI GTATAC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 428
Bst4CI ACNGT 6 cut(s) 95, 598, 637, 1401, 1437, 1487
Bst6I CTCTTC 4 cut(s) 39, 398, 452, 876
BstAUI TGTACA 1 cut(s) 676
BstC8I GCNNGC 6 cut(s) 1406, 1410, 1414, 1418, 1422, 1444
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 1397
BstF5I GGATG 4 cut(s) 829, 1096, 1151, 1476
BstFNI CGCG 1 cut(s) 1418
BstHHI GCGC 2 cut(s) 1418, 1420
BstKTI GATC 5 cut(s) 181, 379, 658, 1015, 1273
BstMAI GTCTC 3 cut(s) 861, 1142, 1426
BstMBI GATC 5 cut(s) 178, 376, 655, 1012, 1270
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 1424
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 1227
BstUI CGCG 1 cut(s) 1418
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 1536
BstX2I RGATCY 2 cut(s) 376, 1012
BstXI CCANNNNNNTGG 1 cut(s) 1404
BstYI RGATCY 2 cut(s) 376, 1012
BstZ17I GTATAC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 5, 651, 875
BtgI CCRYGG 1 cut(s) 1397
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 4 cut(s) 829, 1096, 1151, 1476
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 4 cut(s) 59, 100, 332, 476
Cac8I GCNNGC 6 cut(s) 1406, 1410, 1414, 1418, 1422, 1444
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 1418, 1420
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 3 cut(s) 677, 1159, 1168
CspCI CAANNNNNGTGG 2 cut(s) 1333, 1368
CviAII CATG 6 cut(s) 331, 933, 970, 1007, 1267, 1421
CviQI GTAC 3 cut(s) 677, 1159, 1168
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 180, 378, 657, 1014, 1272
DpnII GATC 5 cut(s) 178, 376, 655, 1012, 1270
DraI TTTAAA 3 cut(s) 412, 732, 1063
Eam1104I CTCTTC 4 cut(s) 39, 398, 452, 876
EarI CTCTTC 4 cut(s) 39, 398, 452, 876
EciI GGCGGA 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 1070
EcoRI GAATTC 2 cut(s) 987, 1077
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 6 cut(s) 334, 936, 973, 1010, 1270, 1424
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 2 cut(s) 754, 1388
FatI CATG 6 cut(s) 330, 932, 969, 1006, 1266, 1420
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 3 cut(s) 427, 1213, 1226
Fnu4HI GCNGC 2 cut(s) 99, 234
FokI GGATG 4 cut(s) 836, 1103, 1158, 1463
Fsp4HI GCNGC 2 cut(s) 99, 234
FspBI CTAG 5 cut(s) 291, 381, 950, 1217, 1304
GlaI GCGC 2 cut(s) 1417, 1419
GluI GCNGC 2 cut(s) 99, 234
HaeIII GGCC 3 cut(s) 5, 651, 875
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 1418, 1420
Hin1II CATG 6 cut(s) 334, 936, 973, 1010, 1270, 1424
Hin6I GCGC 2 cut(s) 1416, 1418
HinP1I GCGC 2 cut(s) 1416, 1418
HinfI GANTC 5 cut(s) 245, 590, 884, 1232, 1376
HpaII CCGG 1 cut(s) 103
HphI GGTGA 3 cut(s) 475, 755, 1333
Hpy166II GTNNAC 4 cut(s) 428, 1214, 1227, 1344
Hpy188I TCNGA 3 cut(s) 535, 1021, 1298
Hpy188III TCNNGA 6 cut(s) 182, 271, 291, 434, 1088, 1143
Hpy8I GTNNAC 4 cut(s) 428, 1214, 1227, 1344
Hpy99I CGWCG 1 cut(s) 1388
HpyAV CCTTC 4 cut(s) 430, 1066, 1090, 1293
HpyCH4III ACNGT 6 cut(s) 95, 598, 637, 1401, 1437, 1487
HpyCH4IV ACGT 1 cut(s) 1191
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 1191
Hsp92II CATG 6 cut(s) 334, 936, 973, 1010, 1270, 1424
HspAI GCGC 2 cut(s) 1416, 1418
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 178, 376, 655, 1012, 1270
LmnI GCTCC 3 cut(s) 52, 709, 1459
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 406, 456
MaeI CTAG 5 cut(s) 291, 381, 950, 1217, 1304
MaeII ACGT 1 cut(s) 1191
MalI GATC 5 cut(s) 180, 378, 657, 1014, 1272
MboI GATC 5 cut(s) 178, 376, 655, 1012, 1270
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 376, 1012
MhlI GDGCHC 1 cut(s) 1335
MlyI GAGTC 3 cut(s) 584, 893, 1370
MmeI TCCRAC 2 cut(s) 692, 1497
Mph1103I ATGCAT 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 1077
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 103
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 971
MvnI CGCG 1 cut(s) 1418
MwoI GCNNNNNNNGC 1 cut(s) 142
NciI CCSGG 1 cut(s) 103
NdeII GATC 5 cut(s) 178, 376, 655, 1012, 1270
NlaIII CATG 6 cut(s) 334, 936, 973, 1010, 1270, 1424
NlaIV GGNNCC 3 cut(s) 378, 1014, 1461
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 1424
PaeI GCATGC 1 cut(s) 1424
PauI GCGCGC 1 cut(s) 1416
PctI GAATGC 1 cut(s) 971
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 2 cut(s) 245, 1232
PkrI GCNGC 2 cut(s) 100, 235
PleI GAGTC 3 cut(s) 584, 892, 1370
PpsI GAGTC 3 cut(s) 584, 892, 1370
PspN4I GGNNCC 3 cut(s) 378, 1014, 1461
PspPI GGNCC 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 376, 1012
PteI GCGCGC 1 cut(s) 1416
RsaI GTAC 3 cut(s) 678, 1160, 1169
RsaNI GTAC 3 cut(s) 677, 1159, 1168
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 2 cut(s) 99, 234
Sau3AI GATC 5 cut(s) 178, 376, 655, 1012, 1270
Sau96I GGNCC 1 cut(s) 628
ScaI AGTACT 1 cut(s) 1160
SchI GAGTC 3 cut(s) 584, 893, 1370
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 1335
SfaNI GCATC 2 cut(s) 406, 456
SfcI CTRYAG 1 cut(s) 1227
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SpeI ACTAGT 1 cut(s) 1216
SphI GCATGC 1 cut(s) 1424
SsiI CCGC 3 cut(s) 233, 847, 1105
SspMI CTAG 5 cut(s) 291, 381, 950, 1217, 1304
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 6 cut(s) 95, 598, 637, 1401, 1437, 1487
TaiI ACGT 1 cut(s) 1194
TaqI TCGA 5 cut(s) 272, 593, 887, 1235, 1273
TaqII GACCGA 1 cut(s) 645
TatI WGTACW 2 cut(s) 676, 1158
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 245, 1232
TscAI CASTG 4 cut(s) 59, 100, 332, 476
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 411, 470
TspRI CASTG 4 cut(s) 59, 100, 332, 476
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 3 cut(s) 733, 987, 1077
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 1424
XmiI GTMKAC 3 cut(s) 427, 1213, 1226
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 5 cut(s) 291, 381, 950, 1217, 1304
ZrmI AGTACT 1 cut(s) 1160
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.