Rh5CG438400

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019507
Physical Location & Seq
Reverse (-)
60796027 .. 60802072
6046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG438400.1

Sequence Viewer

Length: 318 bp
ATGAAATGGAGAGGCGCCTTGAACAAAATCAGCAGCATCTCTGGCTGGGTATGTGGGAGTAGTTATGCACGTTCTGAGCCAGAAGGACAGATTGTCCAACAAATCGCGGAATTTGTCTGCAGCAAACCTATTGAAATTGAGTCGACGGAAGATATTGAAACAAAACAAGCAATGAATGGAACTTGTGGGATGAAGTGCACAATCGGCTATAAGAGAGCTGCTGCTGCACTAGGAAAAAAAGAAAAAGAAAGAGATGTTCAATCACTTCAATGGTCCCAGAACAAGATTCCTCGGTTAGCTTTTGAGTGTGCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

105

Amino Acids

11.63

Weight (kDa)

8.64

Isoelectric Point (pI)

64.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019507)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000338.1_g000024 Rmu_sc0004482.1_g000009
rosa_samantha Rh5AG400800 Rh5AG401000 Rh5AG401100 Rh5AG401200 Rh5AG401800 Rh5CG438400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 107
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 15
AgsI TTSAA 5 cut(s) 22, 134, 158, 260, 269
AhdI GACNNNNNGTC 1 cut(s) 92
AluBI AGCT 2 cut(s) 218, 299
AluI AGCT 2 cut(s) 218, 299
Alw21I GWGCWC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 196
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 5 cut(s) 33, 120, 218, 221, 224
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 273
AvaII GGWCC 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 45, 132, 205, 208, 211
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 5 cut(s) 34, 121, 219, 222, 225
BlsI GCNGC 5 cut(s) 35, 122, 220, 223, 226
Bme18I GGWCC 1 cut(s) 273
BmeRI GACNNNNNGTC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 16, 275
BmsI GCATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 195
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 5 cut(s) 45, 132, 205, 208, 211
BseYI CCCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 200
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 16, 275
BspMAI CTGCAG 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 42, 204, 224
BstSFI CTRYAG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 5 cut(s) 45, 132, 205, 208, 211
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 273
CviJI RGCY 5 cut(s) 45, 79, 207, 218, 299
CviKI_1 RGCY 5 cut(s) 45, 79, 207, 218, 299
DdeI CTNAG 1 cut(s) 75
DinI GGCGCC 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 16
EheI GGCGCC 1 cut(s) 16
FaiI YATR 3 cut(s) 52, 66, 210
FaqI GGGAC 1 cut(s) 259
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 5 cut(s) 34, 121, 219, 222, 225
FokI GGATG 1 cut(s) 202
Fsp4HI GCNGC 5 cut(s) 34, 121, 219, 222, 225
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 34, 121, 219, 222, 225
GsaI CCCAGC 1 cut(s) 49
HaeII RGCGCY 1 cut(s) 18
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 2 cut(s) 140, 286
Hpy166II GTNNAC 2 cut(s) 144, 198
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 144, 198
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 68, 120, 198, 227, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 204, 224
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 15
KasI GGCGCC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 27, 31, 93, 290
Lsp1109I GCAGC 5 cut(s) 45, 132, 205, 208, 211
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 70
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 110, 135
Mly113I GGCGCC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 5, 300
MslI CAYNNNNRTG 1 cut(s) 268
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 42, 204, 224
NarI GGCGCC 1 cut(s) 15
NlaIV GGNNCC 2 cut(s) 16, 275
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 5 cut(s) 35, 122, 220, 223, 226
PleI GAGTC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 16, 275
PspPI GGNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 268
SalI GTCGAC 1 cut(s) 142
SatI GCNGC 5 cut(s) 34, 121, 219, 222, 225
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 73, 130, 220, 301
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 16
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 268
Sse9I AATT 2 cut(s) 110, 135
SsiI CCGC 1 cut(s) 107
SspDI GGCGCC 1 cut(s) 14
SspMI CTAG 1 cut(s) 230
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 143
TasI AATT 2 cut(s) 110, 135
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 1 cut(s) 318
TseI GCWGC 5 cut(s) 33, 120, 218, 221, 224
TspDTI ATGAA 3 cut(s) 17, 188, 206
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 318
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 273
XapI RAATTY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.