Rh5AG401000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019507
Physical Location & Seq
Reverse (-)
69411058 .. 69417210
6153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG401000.1

Sequence Viewer

Length: 321 bp
ATGGAGAGACGCCTTGAACAAAATCAGCAGCATCTTTGGCTGGGCCAGAAGGACACGTTGTCCAACAAATCGCGGAATTTGTCTGCAGCAAACCTATTGAAATTGAGTCGACGGAAGATATTGAAACTCATGGAACTTTTGTTTTCAATGGCCTTGATCAACCTAAAAGGCGACCTGTATGAAGGAGAACTTATCAAAGACGTTGTGCAAGCTATGTGCAGTAGACTAGTTCAGTCTACAGAGTCGACAGAAGATTTTAAAGCAACAGGAGATGTCATGGACCGAACTCGTAAGTGGGAGGAAGTGCATAATCGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.4

Weight (kDa)

9.2

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019507)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000338.1_g000024 Rmu_sc0004482.1_g000009
rosa_samantha Rh5AG400800 Rh5AG401000 Rh5AG401100 Rh5AG401200 Rh5AG401800 Rh5CG438400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 109, 223, 236, 245
AccII CGCG 1 cut(s) 73
AciI CCGC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 4 cut(s) 17, 100, 124, 147
AhdI GACNNNNNGTC 1 cut(s) 58
AhlI ACTAGT 1 cut(s) 226
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AoxI GGCC 2 cut(s) 43, 150
ApeKI GCWGC 2 cut(s) 28, 86
ApoI RAATTY 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 43, 280
AvaII GGWCC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 40, 98
BclI TGATCA 1 cut(s) 156
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 84, 237
BisI GCNGC 2 cut(s) 29, 87
BlsI GCNGC 2 cut(s) 30, 88
Bme18I GGWCC 1 cut(s) 280
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 43, 280
BmsI GCATC 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 10
BseXI GCAGC 2 cut(s) 40, 98
BseYI CCCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 45, 152
BsnI GGCC 2 cut(s) 45, 152
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 45, 152
BspFNI CGCG 1 cut(s) 73
BspMAI CTGCAG 1 cut(s) 88
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 210
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 37, 313
BstSFI CTRYAG 2 cut(s) 84, 237
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 40, 98
BsuRI GGCC 2 cut(s) 45, 152
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 43, 280
CseI GACGC 1 cut(s) 18
CviAII CATG 2 cut(s) 130, 277
CviJI RGCY 5 cut(s) 40, 45, 152, 212, 316
CviKI_1 RGCY 5 cut(s) 40, 45, 152, 212, 316
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
DraI TTTAAA 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 280
FaeI CATG 2 cut(s) 133, 280
FaiI YATR 6 cut(s) 131, 180, 215, 278, 309, 319
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 129, 276
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 4 cut(s) 109, 223, 236, 245
Fnu4HI GCNGC 2 cut(s) 29, 87
Fsp4HI GCNGC 2 cut(s) 29, 87
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 29, 87
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 45, 152
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 2 cut(s) 133, 280
HincII GTYRAC 2 cut(s) 110, 246
HindII GTYRAC 2 cut(s) 110, 246
HinfI GANTC 2 cut(s) 106, 242
Hpy166II GTNNAC 4 cut(s) 110, 224, 237, 246
Hpy8I GTNNAC 4 cut(s) 110, 224, 237, 246
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 43, 176
HpyCH4IV ACGT 2 cut(s) 56, 201
HpyCH4V TGCA 4 cut(s) 86, 208, 219, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 313
HpySE526I ACGT 2 cut(s) 56, 201
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 133, 280
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 26, 59, 188, 252
Lsp1109I GCAGC 2 cut(s) 40, 98
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 227
MaeII ACGT 2 cut(s) 56, 201
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 127, 263
MluCI AATT 2 cut(s) 76, 101
MlyI GAGTC 2 cut(s) 115, 251
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 1 cut(s) 292
MseI TTAA 1 cut(s) 258
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 2 cut(s) 37, 313
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 133, 280
PkrI GCNGC 2 cut(s) 30, 88
PleI GAGTC 2 cut(s) 114, 250
PpsI GAGTC 2 cut(s) 114, 250
PspFI CCCAGC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 43, 280
PstI CTGCAG 1 cut(s) 88
SalI GTCGAC 2 cut(s) 108, 244
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 29, 87
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 43, 280
SchI GAGTC 2 cut(s) 115, 251
SetI ASST 6 cut(s) 59, 96, 165, 177, 204, 214
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 2 cut(s) 84, 237
SinI GGWCC 1 cut(s) 280
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 2 cut(s) 76, 101
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 227
TaiI ACGT 2 cut(s) 59, 204
TaqI TCGA 2 cut(s) 109, 245
TaqII GACCGA 1 cut(s) 297
TasI AATT 2 cut(s) 76, 101
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 2 cut(s) 28, 86
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 76
XmiI GTMKAC 4 cut(s) 109, 223, 236, 245
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.