Rh5AG401100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019507
Physical Location & Seq
Reverse (-)
69428271 .. 69434459
6189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG401100.1

Sequence Viewer

Length: 444 bp
ATGGCTGCACATGAAGAGCGGTTTAAAGATCAAAAAGAGAGGCTGATGAAATGGAGACACGCCTTGACAGAAATAAGCGGCATCTTTGGCTGGGTATATGGGAGTTCTGAGCCAGAAGGACACCTTGTCCAACAAATCGCGGAATTTGTCTCCAGCAAACTTATTGAAATTGAGTCGGCGGAAGACATTGAAACAAAACAAGCAATGAATGGAACTTGTAAGTACGAAGGAAAACTTATCAAAGACGTTGTGAAAGAAGTGTGCAGTAGAATAGTTCAGTCTACAGAGTCGACAGAAGATTTTGAAGCAACAGGAGATAACATGGACCGACCTTGTGGGATGAAGTGCATAATCGGCTATAAGAGAGCTGCTGCTGCACTAGGAAAAAAAGATAAAAAAAAGAGATGTTCAATGGTCCCAGAACAAGATTCAGTTAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

147

Amino Acids

16.58

Weight (kDa)

5.98

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019507)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000338.1_g000024 Rmu_sc0004482.1_g000009
rosa_samantha Rh5AG400800 Rh5AG401000 Rh5AG401100 Rh5AG401200 Rh5AG401800 Rh5CG438400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 19
AccI GTMKAC 2 cut(s) 281, 290
AccII CGCG 1 cut(s) 140
AciI CCGC 4 cut(s) 19, 78, 140, 179
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 4 cut(s) 167, 191, 305, 411
AhdI GACNNNNNGTC 1 cut(s) 125
AluBI AGCT 2 cut(s) 368, 438
AluI AGCT 2 cut(s) 368, 438
Alw26I GTCTC 2 cut(s) 49, 154
ApeKI GCWGC 4 cut(s) 5, 368, 371, 374
ApoI RAATTY 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 325, 415
AvaII GGWCC 2 cut(s) 325, 415
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 355, 358, 361
BcoDI GTCTC 2 cut(s) 49, 154
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 5 cut(s) 6, 79, 369, 372, 375
BlsI GCNGC 5 cut(s) 7, 80, 370, 373, 376
Bme18I GGWCC 2 cut(s) 325, 415
BmeRI GACNNNNNGTC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 325, 415
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 210
BseGI GGATG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 3 cut(s) 355, 358, 361
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 283, 360
Bsh1236I CGCG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 49, 154
BsmFI GGGAC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 4 cut(s) 19, 78, 140, 179
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 417
BspQI GCTCTTC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 210
BssMI GATC 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 49, 154
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 87, 354, 374
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 355, 358, 361
BstV2I GAAGAC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 325, 415
Csp6I GTAC 1 cut(s) 223
CviAII CATG 2 cut(s) 11, 322
CviJI RGCY 7 cut(s) 5, 43, 90, 112, 357, 368, 438
CviKI_1 RGCY 7 cut(s) 5, 43, 90, 112, 357, 368, 438
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DraI TTTAAA 1 cut(s) 25
DriI GACNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 325, 415
FaeI CATG 2 cut(s) 14, 325
FaiI YATR 6 cut(s) 12, 97, 99, 323, 350, 360
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 219, 251
FaqI GGGAC 1 cut(s) 401
FatI CATG 2 cut(s) 10, 321
FblI GTMKAC 2 cut(s) 281, 290
Fnu4HI GCNGC 5 cut(s) 6, 79, 369, 372, 375
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 5 cut(s) 6, 79, 369, 372, 375
FspBI CTAG 1 cut(s) 380
GluI GCNGC 5 cut(s) 6, 79, 369, 372, 375
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 136
Hin1II CATG 2 cut(s) 14, 325
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 3 cut(s) 173, 287, 428
Hpy166II GTNNAC 2 cut(s) 282, 291
Hpy188I TCNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 282, 291
HpyAV CCTTC 2 cut(s) 110, 221
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 8, 264, 348, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 354, 374
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 14, 325
Kzo9I GATC 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 76, 126, 166, 297, 432
Lsp1109I GCAGC 3 cut(s) 355, 358, 361
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 30
MbiI CCGCTC 1 cut(s) 19
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 26, 194, 308
MluCI AATT 2 cut(s) 143, 168
MlyI GAGTC 2 cut(s) 182, 296
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 33
MseI TTAA 1 cut(s) 24
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 3 cut(s) 87, 354, 374
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 14, 325
NlaIV GGNNCC 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 5 cut(s) 7, 80, 370, 373, 376
PleI GAGTC 2 cut(s) 181, 295
PpsI GAGTC 2 cut(s) 181, 295
PspFI CCCAGC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 325, 415
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SalI GTCGAC 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 5 cut(s) 6, 79, 369, 372, 375
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 325, 415
SchI GAGTC 2 cut(s) 182, 296
SetI ASST 5 cut(s) 126, 249, 334, 370, 440
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 325, 415
Sse9I AATT 2 cut(s) 143, 168
SsiI CCGC 4 cut(s) 19, 78, 140, 179
SspMI CTAG 1 cut(s) 380
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 290
TaqII GACCGA 1 cut(s) 342
TasI AATT 2 cut(s) 143, 168
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 4 cut(s) 5, 368, 371, 374
TspDTI ATGAA 4 cut(s) 27, 62, 221, 356
VpaK11BI GGWCC 2 cut(s) 325, 415
XapI RAATTY 1 cut(s) 143
XmiI GTMKAC 2 cut(s) 281, 290
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.