Rmu_sc0004482.1_g000009

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004482.1
OG0019507
Physical Location & Seq
Reverse (-)
41505 .. 42380
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004482.1_g000009.1.cds

Sequence Viewer

Length: 624 bp
atggaaaataaggaaacaattctgccagttttctatcatgtggatccctctgaagtgcgctctcaaaggggggtgtgcggagcggccttggctgcacatgaagagcggttcaaagatcaaaaagagaggctgatgaaatggagggacgccttgaacaaaatcagcagcatctttggctgggtatgtgggagttctgagccagaaggacagcttgtccaacaaatcgcggaatttgtctgcagcaaacctattgaaattaagtcgacggaagatattgaaactcaaggaacttttgttttcaatggccttgatcaacctaaaaggcgacctgtacatcacttccttgagctaaaatcagctcctcgttggaagtatgatgtgtttataaatttcaggggtgaggacacttgtaagggttttctgtcctatttactagctgaattgcaaaagaaaccagcacacctgaacagagtaaagaatgatgaaccacttccaaaagggcggaatatatcttcgtatctcctaaacgccatagaagaggcgaggtttgccattgttgttctttcgcaagactttgcttattcatcatatatggtgcctagaggaactagcaaagatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

207

Amino Acids

23.76

Weight (kDa)

7.68

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019507)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000338.1_g000024 Rmu_sc0004482.1_g000009
rosa_samantha Rh5AG400800 Rh5AG401000 Rh5AG401100 Rh5AG401200 Rh5AG401800 Rh5CG438400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 595
AccBSI CCGCTC 2 cut(s) 83, 106
AccI GTMKAC 1 cut(s) 263
AccII CGCG 1 cut(s) 227
AciI CCGC 5 cut(s) 78, 83, 106, 227, 502
AclWI GGATC 2 cut(s) 38, 51
AcsI RAATTY 2 cut(s) 230, 388
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 333
AgsI TTSAA 5 cut(s) 112, 154, 254, 278, 301
AhdI GACNNNNNGTC 1 cut(s) 212
AluBI AGCT 4 cut(s) 211, 349, 359, 437
AluI AGCT 4 cut(s) 211, 349, 359, 437
AlwI GGATC 2 cut(s) 38, 51
AoxI GGCC 2 cut(s) 84, 304
ApeKI GCWGC 3 cut(s) 92, 165, 240
ApoI RAATTY 2 cut(s) 230, 388
Asp700I GAANNNNTTC 2 cut(s) 18, 489
AspLEI GCGC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 79, 177, 252
BclI TGATCA 1 cut(s) 310
BfaI CTAG 3 cut(s) 434, 600, 609
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 4 cut(s) 84, 93, 166, 241
BlsI GCNGC 4 cut(s) 85, 94, 167, 242
BmeRI GACNNNNNGTC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 45, 597
BmsI GCATC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 267, 365
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 3 cut(s) 79, 177, 252
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 86, 306
BshNI GGYRCC 1 cut(s) 595
BslFI GGGAC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 2 cut(s) 86, 306
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 43, 115, 310
BspACI CCGC 5 cut(s) 78, 83, 106, 227, 502
BspANI GGCC 2 cut(s) 86, 306
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 45, 597
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 2 cut(s) 38, 51
BspQI GCTCTTC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 595
BsrBI CCGCTC 2 cut(s) 83, 106
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 43, 115, 310
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 87
Bst6I CTCTTC 2 cut(s) 96, 531
BstACI GRCGYC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 46, 118, 313
BstMBI GATC 3 cut(s) 43, 115, 310
BstMWI GCNNNNNNNGC 4 cut(s) 89, 92, 174, 548
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 79, 177, 252
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 2 cut(s) 86, 306
CfoI GCGC 1 cut(s) 60
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 332
CviAII CATG 2 cut(s) 38, 98
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 45, 117, 312
DpnII GATC 3 cut(s) 43, 115, 310
DriI GACNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 96, 531
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 2 cut(s) 96, 531
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 41, 101
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 37, 97
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 84, 93, 166, 241
Fsp4HI GCNGC 4 cut(s) 84, 93, 166, 241
FspBI CTAG 3 cut(s) 434, 600, 609
GlaI GCGC 1 cut(s) 59
GluI GCNGC 4 cut(s) 84, 93, 166, 241
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 86, 306
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 2 cut(s) 41, 101
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 52, 196
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 95, 240, 445
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 92, 174, 548
HpyF3I CTNAG 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 2 cut(s) 41, 101
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 43, 115, 310
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 80, 364
LpnPI CCDG 7 cut(s) 39, 163, 213, 342, 379, 468, 476
Lsp1109I GCAGC 3 cut(s) 79, 177, 252
LweI GCATC 1 cut(s) 177
MaeI CTAG 3 cut(s) 434, 600, 609
MalI GATC 3 cut(s) 45, 117, 312
MbiI CCGCTC 2 cut(s) 83, 106
MboI GATC 3 cut(s) 43, 115, 310
MboII GAAGA 4 cut(s) 113, 281, 504, 548
MflI RGATCY 1 cut(s) 43
MluCI AATT 5 cut(s) 18, 230, 255, 388, 440
MmeI TCCRAC 2 cut(s) 241, 347
MnlI CCTC 8 cut(s) 58, 120, 135, 372, 394, 532, 537, 596
MroXI GAANNNNTTC 2 cut(s) 18, 489
MseI TTAA 1 cut(s) 258
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 4 cut(s) 89, 92, 174, 548
NdeII GATC 3 cut(s) 43, 115, 310
NlaIII CATG 2 cut(s) 41, 101
NlaIV GGNNCC 2 cut(s) 45, 597
PciSI GCTCTTC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 18, 489
PkrI GCNGC 4 cut(s) 85, 94, 167, 242
PsiI TTATAA 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 45, 597
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SalI GTCGAC 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 4 cut(s) 84, 93, 166, 241
Sau3AI GATC 3 cut(s) 43, 115, 310
SetI ASST 9 cut(s) 213, 250, 319, 331, 351, 361, 439, 465, 548
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 238
SmlI CTYRAG 2 cut(s) 282, 344
SmoI CTYRAG 2 cut(s) 282, 344
Sse9I AATT 5 cut(s) 18, 230, 255, 388, 440
SsiI CCGC 5 cut(s) 78, 83, 106, 227, 502
SspMI CTAG 3 cut(s) 434, 600, 609
StyI CCWWGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 263
TasI AATT 5 cut(s) 18, 230, 255, 388, 440
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 3 cut(s) 92, 165, 240
TspDTI ATGAA 4 cut(s) 114, 149, 498, 573
TspGWI ACGGA 1 cut(s) 281
XapI RAATTY 2 cut(s) 230, 388
XmiI GTMKAC 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 18, 489
XspI CTAG 3 cut(s) 434, 600, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.