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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60700 AT5G60700 |
| fragaria_vesca | FvH4_3g31890 FvH4_3g31890 |
| malus_domestica | MD03G1120400.v1.1 MD11G1138800.v1.1 |
| prunus_persica | Prupe.6G103800_v2.0.a1 |
| pyrus_communis | pycom11g11450 |
| rosa_chinensis | RchiOBHm_Chr5g0058661 |
| rosa_laevigata | RLG00000035238 |
| rosa_multiflora | Rmu_sc0000367.1_g000205 |
| rosa_roxburghii | Rroxscaffold_1G00021760 |
| rosa_rugosa | Rorug05G0317100 |
| rosa_samantha | Rh5AG382800 Rh5BG394700 Rh5CG418500 Rh5DG410100 |
| rosa_wichuraiana | Rw5G036070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1219 |
| Acc36I | ACCTGC | 1 cut(s) | 1219 |
| Acc65I | GGTACC | 2 cut(s) | 2113, 2256 |
| AccB1I | GGYRCC | 2 cut(s) | 2113, 2256 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1251, 2541 |
| AccBSI | CCGCTC | 1 cut(s) | 1726 |
| AccI | GTMKAC | 4 cut(s) | 211, 900, 1622, 3001 |
| AciI | CCGC | 2 cut(s) | 1726, 2020 |
| AclWI | GGATC | 5 cut(s) | 273, 1868, 2222, 2339, 2357 |
| AcoI | YGGCCR | 1 cut(s) | 543 |
| AcsI | RAATTY | 6 cut(s) | 81, 573, 1613, 1890, 2607, 2830 |
| AcuI | CTGAAG | 1 cut(s) | 659 |
| AdeI | CACNNNGTG | 3 cut(s) | 800, 1524, 3014 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 850, 1251, 1849, 2049, 2067, 2541, 2937 |
| AgeI | ACCGGT | 1 cut(s) | 2996 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 758 |
| AjnI | CCWGG | 5 cut(s) | 1027, 2618, 2712, 2839, 3017 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 428, 460, 816, 848, 1076, 1108 |
| AleI | CACNNNNGTG | 1 cut(s) | 1699 |
| Alw21I | GWGCWC | 4 cut(s) | 332, 585, 805, 882 |
| Alw26I | GTCTC | 9 cut(s) | 5, 368, 1059, 1286, 1473, 1657, 1904, 2314, 2379 |
| AlwI | GGATC | 5 cut(s) | 273, 1868, 2222, 2339, 2357 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1691, 1865, 3024 |
| Ama87I | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| AoxI | GGCC | 7 cut(s) | 543, 1703, 1949, 2183, 2191, 2438, 2859 |
| ApeKI | GCWGC | 6 cut(s) | 1042, 1098, 1529, 1685, 1795, 2921 |
| ApoI | RAATTY | 6 cut(s) | 81, 573, 1613, 1890, 2607, 2830 |
| AsiGI | ACCGGT | 1 cut(s) | 2996 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 779, 2885 |
| Asp718I | GGTACC | 2 cut(s) | 2113, 2256 |
| AspA2I | CCTAGG | 1 cut(s) | 2411 |
| AspLEI | GCGC | 1 cut(s) | 2762 |
| AspS9I | GGNCC | 2 cut(s) | 743, 2192 |
| AsuC2I | CCSGG | 3 cut(s) | 2600, 2745, 2746 |
| AsuHPI | GGTGA | 7 cut(s) | 71, 1421, 1864, 2032, 2304, 2440, 2569 |
| AsuII | TTCGAA | 1 cut(s) | 1987 |
| AsuNHI | GCTAGC | 1 cut(s) | 1811 |
| AvaI | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| AvaII | GGWCC | 1 cut(s) | 743 |
| AvrII | CCTAGG | 1 cut(s) | 2411 |
| BanI | GGYRCC | 2 cut(s) | 2113, 2256 |
| BanII | GRGCYC | 4 cut(s) | 416, 882, 1762, 2752 |
| BbsI | GAAGAC | 2 cut(s) | 647, 2518 |
| Bbv12I | GWGCWC | 4 cut(s) | 332, 585, 805, 882 |
| BbvI | GCAGC | 6 cut(s) | 1029, 1110, 1516, 1697, 1782, 2933 |
| BccI | CCATC | 6 cut(s) | 223, 428, 566, 706, 1969, 2881 |
| BceAI | ACGGC | 2 cut(s) | 1634, 1964 |
| BciT130I | CCWGG | 5 cut(s) | 1029, 2620, 2714, 2841, 3019 |
| BciVI | GTATCC | 1 cut(s) | 1447 |
| BclI | TGATCA | 3 cut(s) | 630, 1827, 2986 |
| BcnI | CCSGG | 3 cut(s) | 2600, 2745, 2746 |
| BcoDI | GTCTC | 9 cut(s) | 5, 368, 1059, 1286, 1473, 1657, 1904, 2314, 2379 |
| BfaI | CTAG | 3 cut(s) | 339, 1812, 2412 |
| BfmI | CTRYAG | 3 cut(s) | 1043, 1150, 1263 |
| BfoI | RGCGCY | 1 cut(s) | 2763 |
| BfuAI | ACCTGC | 1 cut(s) | 1219 |
| BfuI | GTATCC | 1 cut(s) | 1447 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1123 |
| BglII | AGATCT | 2 cut(s) | 1321, 1737 |
| BisI | GCNGC | 6 cut(s) | 1043, 1099, 1530, 1686, 1796, 2922 |
| BlnI | CCTAGG | 1 cut(s) | 2411 |
| BlpI | GCTNAGC | 2 cut(s) | 705, 804 |
| BlsI | GCNGC | 6 cut(s) | 1044, 1100, 1531, 1687, 1797, 2923 |
| BmcAI | AGTACT | 1 cut(s) | 956 |
| Bme1390I | CCNGG | 8 cut(s) | 1029, 2600, 2620, 2714, 2745, 2746, 2841, 3019 |
| Bme18I | GGWCC | 1 cut(s) | 743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 758 |
| BmeT110I | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| BmgT120I | GGNCC | 2 cut(s) | 743, 2192 |
| BmiI | GGNNCC | 7 cut(s) | 745, 968, 2115, 2258, 2450, 2742, 2929 |
| BmrFI | CCNGG | 8 cut(s) | 1029, 2600, 2620, 2714, 2745, 2746, 2841, 3019 |
| BmrI | ACTGGG | 1 cut(s) | 19 |
| BmsI | GCATC | 9 cut(s) | 194, 610, 1543, 1546, 1672, 2043, 2080, 2575, 2945 |
| BmtI | GCTAGC | 1 cut(s) | 1815 |
| BmuI | ACTGGG | 1 cut(s) | 19 |
| BpiI | GAAGAC | 2 cut(s) | 647, 2518 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2375, 2407 |
| BpmI | CTGGAG | 3 cut(s) | 350, 1677, 2946 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 705, 804 |
| Bpu14I | TTCGAA | 1 cut(s) | 1987 |
| BpuEI | CTTGAG | 4 cut(s) | 1682, 2189, 2352, 2848 |
| BpuMI | CCSGG | 3 cut(s) | 2600, 2745, 2746 |
| Bsa29I | ATCGAT | 1 cut(s) | 423 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2027, 2872 |
| BsaJI | CCNNGG | 8 cut(s) | 309, 1028, 1446, 1946, 2411, 2744, 2745, 2763 |
| BsaWI | WCCGGW | 2 cut(s) | 2049, 2996 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 850, 1251, 1849, 2049, 2067, 2541, 2937 |
| Bse118I | RCCGGY | 3 cut(s) | 1313, 2896, 2996 |
| Bse1I | ACTGG | 6 cut(s) | 25, 367, 1379, 1513, 2186, 2500 |
| Bse3DI | GCAATG | 6 cut(s) | 479, 723, 1539, 1644, 1997, 2546 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2027, 2872 |
| BseBI | CCWGG | 5 cut(s) | 1029, 2620, 2714, 2841, 3019 |
| BseCI | ATCGAT | 1 cut(s) | 423 |
| BseDI | CCNNGG | 8 cut(s) | 309, 1028, 1446, 1946, 2411, 2744, 2745, 2763 |
| BseGI | GGATG | 6 cut(s) | 1537, 1980, 2058, 2113, 2476, 2960 |
| BseJI | GATNNNNATC | 2 cut(s) | 2027, 2872 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 850, 1251, 1849, 2049, 2067, 2541, 2937 |
| BseMI | GCAATG | 6 cut(s) | 479, 723, 1539, 1644, 1997, 2546 |
| BseMII | CTCAG | 7 cut(s) | 275, 335, 638, 719, 818, 2098, 2961 |
| BseNI | ACTGG | 6 cut(s) | 25, 367, 1379, 1513, 2186, 2500 |
| BseRI | GAGGAG | 1 cut(s) | 2224 |
| BseXI | GCAGC | 6 cut(s) | 1029, 1110, 1516, 1697, 1782, 2933 |
| BsgI | GTGCAG | 3 cut(s) | 1247, 1310, 1677 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1314 |
| BshFI | GGCC | 7 cut(s) | 545, 1705, 1951, 2185, 2193, 2440, 2861 |
| BshNI | GGYRCC | 2 cut(s) | 2113, 2256 |
| BshTI | ACCGGT | 1 cut(s) | 2996 |
| BshVI | ATCGAT | 1 cut(s) | 423 |
| BsiEI | CGRYCG | 1 cut(s) | 1314 |
| BsiHKAI | GWGCWC | 4 cut(s) | 332, 585, 805, 882 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| BsiSI | CCGG | 7 cut(s) | 1314, 2050, 2600, 2745, 2858, 2897, 2997 |
| BslFI | GGGAC | 4 cut(s) | 19, 246, 729, 1081 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 850, 1251, 1849, 2049, 2067, 2541, 2937 |
| BsmAI | GTCTC | 9 cut(s) | 5, 368, 1059, 1286, 1473, 1657, 1904, 2314, 2379 |
| BsmBI | CGTCTC | 3 cut(s) | 5, 1473, 1657 |
| BsmFI | GGGAC | 4 cut(s) | 19, 246, 729, 1081 |
| BsmI | GAATGC | 3 cut(s) | 285, 2022, 2056 |
| BsnI | GGCC | 7 cut(s) | 545, 1705, 1951, 2185, 2193, 2440, 2861 |
| BsoBI | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| Bsp119I | TTCGAA | 1 cut(s) | 1987 |
| Bsp1286I | GDGCHC | 7 cut(s) | 332, 416, 585, 805, 882, 1762, 2752 |
| Bsp1407I | TGTACA | 1 cut(s) | 1002 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 705, 804 |
| BspACI | CCGC | 2 cut(s) | 1726, 2020 |
| BspANI | GGCC | 7 cut(s) | 545, 1705, 1951, 2185, 2193, 2440, 2861 |
| BspCNI | CTCAG | 7 cut(s) | 276, 334, 637, 718, 817, 2097, 2962 |
| BspDI | ATCGAT | 1 cut(s) | 423 |
| BspLI | GGNNCC | 7 cut(s) | 745, 968, 2115, 2258, 2450, 2742, 2929 |
| BspMAI | CTGCAG | 2 cut(s) | 1047, 1267 |
| BspMI | ACCTGC | 1 cut(s) | 1219 |
| BspOI | GCTAGC | 1 cut(s) | 1815 |
| BspPI | GGATC | 5 cut(s) | 273, 1868, 2222, 2339, 2357 |
| BspQI | GCTCTTC | 1 cut(s) | 320 |
| BspT104I | TTCGAA | 1 cut(s) | 1987 |
| BspT107I | GGYRCC | 2 cut(s) | 2113, 2256 |
| BsrBI | CCGCTC | 1 cut(s) | 1726 |
| BsrDI | GCAATG | 6 cut(s) | 479, 723, 1539, 1644, 1997, 2546 |
| BsrFI | RCCGGY | 3 cut(s) | 1313, 2896, 2996 |
| BsrGI | TGTACA | 1 cut(s) | 1002 |
| BsrI | ACTGG | 6 cut(s) | 25, 367, 1379, 1513, 2186, 2500 |
| BssAI | RCCGGY | 3 cut(s) | 1313, 2896, 2996 |
| BssECI | CCNNGG | 8 cut(s) | 309, 1028, 1446, 1946, 2411, 2744, 2745, 2763 |
| BssNAI | GTATAC | 1 cut(s) | 212 |
| BssT1I | CCWWGG | 3 cut(s) | 309, 2411, 2763 |
| Bst1107I | GTATAC | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 5 cut(s) | 1029, 2620, 2714, 2841, 3019 |
| Bst4CI | ACNGT | 7 cut(s) | 96, 483, 766, 1415, 1450, 1627, 2460 |
| Bst6I | CTCTTC | 3 cut(s) | 320, 884, 2891 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1668, 1691, 3014 |
| BstAUI | TGTACA | 1 cut(s) | 1002 |
| BstBI | TTCGAA | 1 cut(s) | 1987 |
| BstC8I | GCNNGC | 6 cut(s) | 581, 1363, 1813, 2637, 2719, 3010 |
| BstDSI | CCRYGG | 2 cut(s) | 1446, 1946 |
| BstF5I | GGATG | 6 cut(s) | 1537, 1980, 2058, 2113, 2476, 2960 |
| BstH2I | RGCGCY | 1 cut(s) | 2763 |
| BstHHI | GCGC | 1 cut(s) | 2762 |
| BstMAI | GTCTC | 9 cut(s) | 5, 368, 1059, 1286, 1473, 1657, 1904, 2314, 2379 |
| BstMCI | CGRYCG | 1 cut(s) | 1314 |
| BstNI | CCWGG | 5 cut(s) | 1029, 2620, 2714, 2841, 3019 |
| BstNSI | RCATGY | 1 cut(s) | 2896 |
| BstSCI | CCNGG | 8 cut(s) | 1027, 2598, 2618, 2712, 2743, 2744, 2839, 3017 |
| BstSFI | CTRYAG | 3 cut(s) | 1043, 1150, 1263 |
| BstV1I | GCAGC | 6 cut(s) | 1029, 1110, 1516, 1697, 1782, 2933 |
| BstV2I | GAAGAC | 2 cut(s) | 647, 2518 |
| BstX2I | RGATCY | 2 cut(s) | 1321, 1737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 506 |
| BstYI | RGATCY | 2 cut(s) | 1321, 1737 |
| BstZ17I | GTATAC | 1 cut(s) | 212 |
| Bsu15I | ATCGAT | 1 cut(s) | 423 |
| BsuI | GTATCC | 1 cut(s) | 1447 |
| BsuRI | GGCC | 7 cut(s) | 545, 1705, 1951, 2185, 2193, 2440, 2861 |
| BsuTUI | ATCGAT | 1 cut(s) | 423 |
| BtgI | CCRYGG | 2 cut(s) | 1446, 1946 |
| BtsCI | GGATG | 6 cut(s) | 1537, 1980, 2058, 2113, 2476, 2960 |
| BtsI | GCAGTG | 3 cut(s) | 1529, 1758, 1866 |
| BtsIMutI | CAGTG | 8 cut(s) | 771, 1420, 1529, 1758, 1866, 2092, 2251, 2967 |
| BveI | ACCTGC | 1 cut(s) | 1219 |
| Cac8I | GCNNGC | 6 cut(s) | 581, 1363, 1813, 2637, 2719, 3010 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1691, 1865, 3024 |
| CfoI | GCGC | 1 cut(s) | 2762 |
| Cfr10I | RCCGGY | 3 cut(s) | 1313, 2896, 2996 |
| Cfr13I | GGNCC | 2 cut(s) | 743, 2192 |
| Cfr9I | CCCGGG | 1 cut(s) | 2744 |
| ClaI | ATCGAT | 1 cut(s) | 423 |
| CseI | GACGC | 1 cut(s) | 2628 |
| CspAI | ACCGGT | 1 cut(s) | 2996 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 830, 865 |
| DraIII | CACNNNGTG | 3 cut(s) | 800, 1524, 3014 |
| DriI | GACNNNNNGTC | 1 cut(s) | 758 |
| EaeI | YGGCCR | 1 cut(s) | 543 |
| Eam1104I | CTCTTC | 3 cut(s) | 320, 884, 2891 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 758 |
| EarI | CTCTTC | 3 cut(s) | 320, 884, 2891 |
| Ecl136II | GAGCTC | 1 cut(s) | 880 |
| Eco130I | CCWWGG | 3 cut(s) | 309, 2411, 2763 |
| Eco147I | AGGCCT | 1 cut(s) | 2440 |
| Eco24I | GRGCYC | 4 cut(s) | 416, 882, 1762, 2752 |
| Eco32I | GATATC | 4 cut(s) | 135, 1207, 1773, 2302 |
| Eco47I | GGWCC | 1 cut(s) | 743 |
| Eco53kI | GAGCTC | 1 cut(s) | 880 |
| Eco57I | CTGAAG | 1 cut(s) | 659 |
| Eco88I | CYCGRG | 3 cut(s) | 1843, 2381, 2744 |
| EcoICRI | GAGCTC | 1 cut(s) | 880 |
| EcoO109I | RGGNCCY | 1 cut(s) | 743 |
| EcoRII | CCWGG | 5 cut(s) | 1027, 2618, 2712, 2839, 3017 |
| EcoRV | GATATC | 4 cut(s) | 135, 1207, 1773, 2302 |
| EcoT14I | CCWWGG | 3 cut(s) | 309, 2411, 2763 |
| EcoT22I | ATGCAT | 3 cut(s) | 1539, 2058, 2095 |
| EcoT38I | GRGCYC | 4 cut(s) | 416, 882, 1762, 2752 |
| ErhI | CCWWGG | 3 cut(s) | 309, 2411, 2763 |
| Esp3I | CGTCTC | 3 cut(s) | 5, 1473, 1657 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 981, 1013, 2214, 2246 |
| FaqI | GGGAC | 4 cut(s) | 19, 246, 729, 1081 |
| FauNDI | CATATG | 3 cut(s) | 225, 1201, 2736 |
| FbaI | TGATCA | 3 cut(s) | 630, 1827, 2986 |
| FblI | GTMKAC | 4 cut(s) | 211, 900, 1622, 3001 |
| Fnu4HI | GCNGC | 6 cut(s) | 1043, 1099, 1530, 1686, 1796, 2922 |
| FokI | GGATG | 6 cut(s) | 1524, 1987, 2065, 2120, 2463, 2967 |
| FriOI | GRGCYC | 4 cut(s) | 416, 882, 1762, 2752 |
| Fsp4HI | GCNGC | 6 cut(s) | 1043, 1099, 1530, 1686, 1796, 2922 |
| FspBI | CTAG | 3 cut(s) | 339, 1812, 2412 |
| GlaI | GCGC | 1 cut(s) | 2761 |
| GluI | GCNGC | 6 cut(s) | 1043, 1099, 1530, 1686, 1796, 2922 |
| GsuI | CTGGAG | 3 cut(s) | 350, 1677, 2946 |
| HaeII | RGCGCY | 1 cut(s) | 2763 |
| HaeIII | GGCC | 7 cut(s) | 545, 1705, 1951, 2185, 2193, 2440, 2861 |
| HapII | CCGG | 7 cut(s) | 1314, 2050, 2600, 2745, 2858, 2897, 2997 |
| HgaI | GACGC | 1 cut(s) | 2628 |
| HhaI | GCGC | 1 cut(s) | 2762 |
| Hin6I | GCGC | 1 cut(s) | 2760 |
| HinP1I | GCGC | 1 cut(s) | 2760 |
| HincII | GTYRAC | 2 cut(s) | 901, 1384 |
| HindII | GTYRAC | 2 cut(s) | 901, 1384 |
| HindIII | AAGCTT | 3 cut(s) | 925, 1638, 2719 |
| HinfI | GANTC | 9 cut(s) | 19, 521, 868, 894, 914, 1024, 1179, 1834, 2689 |
| HpaII | CCGG | 7 cut(s) | 1314, 2050, 2600, 2745, 2858, 2897, 2997 |
| HphI | GGTGA | 7 cut(s) | 71, 1421, 1864, 2032, 2304, 2440, 2569 |
| Hpy188III | TCNNGA | 9 cut(s) | 518, 772, 784, 918, 1214, 1656, 1831, 2206, 2865 |
| Hpy99I | CGWCG | 1 cut(s) | 902 |
| HpyAV | CCTTC | 9 cut(s) | 269, 407, 426, 842, 957, 1101, 1309, 1962, 2809 |
| HpyCH4III | ACNGT | 7 cut(s) | 96, 483, 766, 1415, 1450, 1627, 2460 |
| HspAI | GCGC | 1 cut(s) | 2760 |
| KpnI | GGTACC | 2 cut(s) | 2117, 2260 |
| Ksp22I | TGATCA | 3 cut(s) | 630, 1827, 2986 |
| LguI | GCTCTTC | 1 cut(s) | 320 |
| LmnI | GCTCC | 3 cut(s) | 825, 2519, 2927 |
| Lsp1109I | GCAGC | 6 cut(s) | 1029, 1110, 1516, 1697, 1782, 2933 |
| LweI | GCATC | 9 cut(s) | 194, 610, 1543, 1546, 1672, 2043, 2080, 2575, 2945 |
| MaeI | CTAG | 3 cut(s) | 339, 1812, 2412 |
| MaeIII | GTNAC | 6 cut(s) | 196, 346, 509, 760, 1409, 2502 |
| MbiI | CCGCTC | 1 cut(s) | 1726 |
| MfeI | CAATTG | 1 cut(s) | 68 |
| MflI | RGATCY | 2 cut(s) | 1321, 1737 |
| MhlI | GDGCHC | 7 cut(s) | 332, 416, 585, 805, 882, 1762, 2752 |
| MlyI | GAGTC | 3 cut(s) | 877, 1173, 2698 |
| MmeI | TCCRAC | 5 cut(s) | 277, 577, 645, 847, 1609 |
| Mph1103I | ATGCAT | 3 cut(s) | 1539, 2058, 2095 |
| MroXI | GAANNNNTTC | 2 cut(s) | 779, 2885 |
| MseI | TTAA | 8 cut(s) | 216, 1275, 1587, 1734, 2076, 2466, 2907, 2915 |
| MslI | CAYNNNNRTG | 2 cut(s) | 472, 1699 |
| MspA1I | CMGCKG | 2 cut(s) | 709, 2924 |
| MspI | CCGG | 7 cut(s) | 1314, 2050, 2600, 2745, 2858, 2897, 2997 |
| MspR9I | CCNGG | 8 cut(s) | 1029, 2600, 2620, 2714, 2745, 2746, 2841, 3019 |
| MunI | CAATTG | 1 cut(s) | 68 |
| Mva1269I | GAATGC | 3 cut(s) | 285, 2022, 2056 |
| MvaI | CCWGG | 5 cut(s) | 1029, 2620, 2714, 2841, 3019 |
| NciI | CCSGG | 3 cut(s) | 2600, 2745, 2746 |
| NdeI | CATATG | 3 cut(s) | 225, 1201, 2736 |
| NheI | GCTAGC | 1 cut(s) | 1811 |
| NlaIV | GGNNCC | 7 cut(s) | 745, 968, 2115, 2258, 2450, 2742, 2929 |
| NmuCI | GTSAC | 4 cut(s) | 346, 509, 760, 1409 |
| NsiI | ATGCAT | 3 cut(s) | 1539, 2058, 2095 |
| NspI | RCATGY | 1 cut(s) | 2896 |
| NspV | TTCGAA | 1 cut(s) | 1987 |
| OliI | CACNNNNGTG | 1 cut(s) | 1699 |
| PaqCI | CACCTGC | 1 cut(s) | 1219 |
| PceI | AGGCCT | 1 cut(s) | 2440 |
| PciSI | GCTCTTC | 1 cut(s) | 320 |
| PctI | GAATGC | 3 cut(s) | 285, 2022, 2056 |
| PdmI | GAANNNNTTC | 2 cut(s) | 779, 2885 |
| PfeI | GAWTC | 6 cut(s) | 19, 521, 894, 914, 1024, 1834 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1251, 2541 |
| PfoI | TCCNGGA | 1 cut(s) | 2618 |
| PinAI | ACCGGT | 1 cut(s) | 2996 |
| PkrI | GCNGC | 6 cut(s) | 1044, 1100, 1531, 1687, 1797, 2923 |
| PleI | GAGTC | 3 cut(s) | 876, 1173, 2697 |
| PpsI | GAGTC | 3 cut(s) | 876, 1173, 2697 |
| PpuMI | RGGWCCY | 1 cut(s) | 743 |
| Psp124BI | GAGCTC | 1 cut(s) | 882 |
| Psp5II | RGGWCCY | 1 cut(s) | 743 |
| Psp6I | CCWGG | 5 cut(s) | 1027, 2618, 2712, 2839, 3017 |
| PspGI | CCWGG | 5 cut(s) | 1027, 2618, 2712, 2839, 3017 |
| PspN4I | GGNNCC | 7 cut(s) | 745, 968, 2115, 2258, 2450, 2742, 2929 |
| PspPI | GGNCC | 2 cut(s) | 743, 2192 |
| PspPPI | RGGWCCY | 1 cut(s) | 743 |
| PstI | CTGCAG | 2 cut(s) | 1047, 1267 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1691, 1865, 3024 |
| PsuI | RGATCY | 2 cut(s) | 1321, 1737 |
| PvuII | CAGCTG | 2 cut(s) | 709, 2924 |
| RseI | CAYNNNNRTG | 2 cut(s) | 472, 1699 |
| SacI | GAGCTC | 1 cut(s) | 882 |
| SalI | GTCGAC | 1 cut(s) | 899 |
| SapI | GCTCTTC | 1 cut(s) | 320 |
| SaqAI | TTAA | 8 cut(s) | 216, 1275, 1587, 1734, 2076, 2466, 2907, 2915 |
| SatI | GCNGC | 6 cut(s) | 1043, 1099, 1530, 1686, 1796, 2922 |
| Sau96I | GGNCC | 2 cut(s) | 743, 2192 |
| ScaI | AGTACT | 1 cut(s) | 956 |
| SchI | GAGTC | 3 cut(s) | 877, 1173, 2698 |
| ScrFI | CCNGG | 8 cut(s) | 1029, 2600, 2620, 2714, 2745, 2746, 2841, 3019 |
| SduI | GDGCHC | 7 cut(s) | 332, 416, 585, 805, 882, 1762, 2752 |
| SfaNI | GCATC | 9 cut(s) | 194, 610, 1543, 1546, 1672, 2043, 2080, 2575, 2945 |
| SfcI | CTRYAG | 3 cut(s) | 1043, 1150, 1263 |
| SfuI | TTCGAA | 1 cut(s) | 1987 |
| SinI | GGWCC | 1 cut(s) | 743 |
| SmaI | CCCGGG | 1 cut(s) | 2746 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 472, 1699 |
| SmlI | CTYRAG | 4 cut(s) | 1697, 2204, 2367, 2863 |
| SmoI | CTYRAG | 4 cut(s) | 1697, 2204, 2367, 2863 |
| SseBI | AGGCCT | 1 cut(s) | 2440 |
| SsiI | CCGC | 2 cut(s) | 1726, 2020 |
| SspI | AATATT | 1 cut(s) | 204 |
| SspMI | CTAG | 3 cut(s) | 339, 1812, 2412 |
| SstI | GAGCTC | 1 cut(s) | 882 |
| StuI | AGGCCT | 1 cut(s) | 2440 |
| StyD4I | CCNGG | 8 cut(s) | 1027, 2598, 2618, 2712, 2743, 2744, 2839, 3017 |
| StyI | CCWWGG | 3 cut(s) | 309, 2411, 2763 |
| TaaI | ACNGT | 7 cut(s) | 96, 483, 766, 1415, 1450, 1627, 2460 |
| TaqI | TCGA | 9 cut(s) | 241, 423, 600, 900, 1310, 1987, 2236, 2292, 2304 |
| TatI | WGTACW | 5 cut(s) | 483, 954, 1002, 1077, 1350 |
| TfiI | GAWTC | 6 cut(s) | 19, 521, 894, 914, 1024, 1834 |
| Tru1I | TTAA | 8 cut(s) | 216, 1275, 1587, 1734, 2076, 2466, 2907, 2915 |
| Tru9I | TTAA | 8 cut(s) | 216, 1275, 1587, 1734, 2076, 2466, 2907, 2915 |
| TscAI | CASTG | 8 cut(s) | 771, 1420, 1529, 1758, 1866, 2092, 2251, 2974 |
| TseFI | GTSAC | 4 cut(s) | 346, 509, 760, 1409 |
| TseI | GCWGC | 6 cut(s) | 1042, 1098, 1529, 1685, 1795, 2921 |
| Tsp45I | GTSAC | 4 cut(s) | 346, 509, 760, 1409 |
| TspGWI | ACGGA | 1 cut(s) | 23 |
| TspMI | CCCGGG | 1 cut(s) | 2744 |
| TspRI | CASTG | 8 cut(s) | 771, 1420, 1529, 1758, 1866, 2092, 2251, 2974 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1251, 2541 |
| VpaK11BI | GGWCC | 1 cut(s) | 743 |
| XapI | RAATTY | 6 cut(s) | 81, 573, 1613, 1890, 2607, 2830 |
| XceI | RCATGY | 1 cut(s) | 2896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 447 |
| XmaI | CCCGGG | 1 cut(s) | 2744 |
| XmaJI | CCTAGG | 1 cut(s) | 2411 |
| XmiI | GTMKAC | 4 cut(s) | 211, 900, 1622, 3001 |
| XmnI | GAANNNNTTC | 2 cut(s) | 779, 2885 |
| XspI | CTAG | 3 cut(s) | 339, 1812, 2412 |
| ZrmI | AGTACT | 1 cut(s) | 956 |
| Zsp2I | ATGCAT | 3 cut(s) | 1539, 2058, 2095 |