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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G60700 AT5G60700 |
| fragaria_vesca | FvH4_3g31890 FvH4_3g31890 |
| malus_domestica | MD03G1120400.v1.1 MD11G1138800.v1.1 |
| prunus_persica | Prupe.6G103800_v2.0.a1 |
| pyrus_communis | pycom11g11450 |
| rosa_chinensis | RchiOBHm_Chr5g0058661 |
| rosa_laevigata | RLG00000035238 |
| rosa_multiflora | Rmu_sc0000367.1_g000205 |
| rosa_roxburghii | Rroxscaffold_1G00021760 |
| rosa_rugosa | Rorug05G0317100 |
| rosa_samantha | Rh5AG382800 Rh5BG394700 Rh5CG418500 Rh5DG410100 |
| rosa_wichuraiana | Rw5G036070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1336 |
| Acc36I | ACCTGC | 2 cut(s) | 62, 1336 |
| Acc65I | GGTACC | 2 cut(s) | 2230, 2373 |
| AccB1I | GGYRCC | 2 cut(s) | 2230, 2373 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1368, 2658 |
| AccBSI | CCGCTC | 1 cut(s) | 1843 |
| AccI | GTMKAC | 3 cut(s) | 328, 1017, 3118 |
| AciI | CCGC | 1 cut(s) | 1843 |
| AclWI | GGATC | 5 cut(s) | 15, 1985, 2339, 2456, 2474 |
| AcoI | YGGCCR | 2 cut(s) | 660, 1820 |
| AcsI | RAATTY | 4 cut(s) | 198, 690, 2724, 2947 |
| AcuI | CTGAAG | 1 cut(s) | 776 |
| AdeI | CACNNNGTG | 3 cut(s) | 917, 1641, 3131 |
| AflIII | ACRYGT | 1 cut(s) | 777 |
| AgeI | ACCGGT | 1 cut(s) | 3113 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 875 |
| AjiI | CACGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 4 cut(s) | 1144, 2829, 2956, 3134 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 545, 577, 933, 965, 1193, 1225 |
| AleI | CACNNNNGTG | 1 cut(s) | 1816 |
| Alw21I | GWGCWC | 4 cut(s) | 449, 702, 922, 999 |
| Alw26I | GTCTC | 9 cut(s) | 202, 485, 1176, 1403, 1590, 1774, 2021, 2431, 2496 |
| AlwI | GGATC | 5 cut(s) | 15, 1985, 2339, 2456, 2474 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 54, 1808, 1982, 3141 |
| Ama87I | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| AoxI | GGCC | 7 cut(s) | 660, 1820, 2066, 2300, 2308, 2555, 2976 |
| ApeKI | GCWGC | 7 cut(s) | 162, 1159, 1215, 1646, 1802, 1912, 3038 |
| ApoI | RAATTY | 4 cut(s) | 198, 690, 2724, 2947 |
| AsiGI | ACCGGT | 1 cut(s) | 3113 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 896, 3002 |
| Asp718I | GGTACC | 2 cut(s) | 2230, 2373 |
| AspA2I | CCTAGG | 1 cut(s) | 2528 |
| AspLEI | GCGC | 1 cut(s) | 2879 |
| AspS9I | GGNCC | 4 cut(s) | 51, 860, 1737, 2309 |
| AsuC2I | CCSGG | 5 cut(s) | 2168, 2717, 2737, 2862, 2863 |
| AsuHPI | GGTGA | 7 cut(s) | 188, 1538, 1981, 2149, 2421, 2557, 2686 |
| AsuII | TTCGAA | 1 cut(s) | 2104 |
| AsuNHI | GCTAGC | 1 cut(s) | 1928 |
| AvaI | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| AvaII | GGWCC | 3 cut(s) | 51, 860, 1737 |
| AvrII | CCTAGG | 1 cut(s) | 2528 |
| BanI | GGYRCC | 2 cut(s) | 2230, 2373 |
| BanII | GRGCYC | 4 cut(s) | 533, 999, 1879, 2869 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 352, 384 |
| BbsI | GAAGAC | 3 cut(s) | 764, 2635, 2943 |
| Bbv12I | GWGCWC | 4 cut(s) | 449, 702, 922, 999 |
| BbvI | GCAGC | 7 cut(s) | 149, 1146, 1227, 1633, 1814, 1899, 3050 |
| BccI | CCATC | 6 cut(s) | 340, 545, 683, 823, 2086, 2998 |
| BceAI | ACGGC | 1 cut(s) | 1751 |
| BciT130I | CCWGG | 4 cut(s) | 1146, 2831, 2958, 3136 |
| BciVI | GTATCC | 1 cut(s) | 1564 |
| BclI | TGATCA | 3 cut(s) | 747, 1944, 3103 |
| BcnI | CCSGG | 5 cut(s) | 2168, 2717, 2737, 2862, 2863 |
| BcoDI | GTCTC | 9 cut(s) | 202, 485, 1176, 1403, 1590, 1774, 2021, 2431, 2496 |
| BfaI | CTAG | 3 cut(s) | 456, 1929, 2529 |
| BfmI | CTRYAG | 3 cut(s) | 1160, 1267, 1380 |
| BfoI | RGCGCY | 1 cut(s) | 2880 |
| BfuAI | ACCTGC | 2 cut(s) | 62, 1336 |
| BfuI | GTATCC | 1 cut(s) | 1564 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1240 |
| BglII | AGATCT | 2 cut(s) | 1438, 1854 |
| BisI | GCNGC | 7 cut(s) | 163, 1160, 1216, 1647, 1803, 1913, 3039 |
| BlnI | CCTAGG | 1 cut(s) | 2528 |
| BlpI | GCTNAGC | 2 cut(s) | 822, 921 |
| BlsI | GCNGC | 7 cut(s) | 164, 1161, 1217, 1648, 1804, 1914, 3040 |
| BmcAI | AGTACT | 1 cut(s) | 1073 |
| Bme1390I | CCNGG | 9 cut(s) | 1146, 2168, 2717, 2737, 2831, 2862, 2863, 2958, 3136 |
| Bme18I | GGWCC | 3 cut(s) | 51, 860, 1737 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 875 |
| BmeT110I | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| BmgBI | CACGTC | 1 cut(s) | 778 |
| BmgT120I | GGNCC | 4 cut(s) | 51, 860, 1737, 2309 |
| BmiI | GGNNCC | 7 cut(s) | 862, 1085, 2232, 2375, 2567, 2859, 3046 |
| BmrFI | CCNGG | 9 cut(s) | 1146, 2168, 2717, 2737, 2831, 2862, 2863, 2958, 3136 |
| BmsI | GCATC | 8 cut(s) | 311, 727, 1660, 1663, 1789, 2197, 2692, 3062 |
| BmtI | GCTAGC | 1 cut(s) | 1932 |
| BpiI | GAAGAC | 3 cut(s) | 764, 2635, 2943 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2492, 2524 |
| BpmI | CTGGAG | 3 cut(s) | 467, 1794, 3063 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 822, 921 |
| Bpu14I | TTCGAA | 1 cut(s) | 2104 |
| BpuEI | CTTGAG | 5 cut(s) | 1745, 1799, 2306, 2469, 2965 |
| BpuMI | CCSGG | 5 cut(s) | 2168, 2717, 2737, 2862, 2863 |
| Bsa29I | ATCGAT | 1 cut(s) | 540 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2144, 2989 |
| BsaJI | CCNNGG | 7 cut(s) | 426, 1145, 2063, 2528, 2861, 2862, 2880 |
| BsaWI | WCCGGW | 1 cut(s) | 3113 |
| Bse118I | RCCGGY | 3 cut(s) | 1430, 3013, 3113 |
| Bse1I | ACTGG | 5 cut(s) | 484, 1496, 1630, 2303, 2617 |
| Bse3DI | GCAATG | 6 cut(s) | 596, 840, 1656, 1761, 2114, 2663 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2144, 2989 |
| BseBI | CCWGG | 4 cut(s) | 1146, 2831, 2958, 3136 |
| BseCI | ATCGAT | 1 cut(s) | 540 |
| BseDI | CCNNGG | 7 cut(s) | 426, 1145, 2063, 2528, 2861, 2862, 2880 |
| BseGI | GGATG | 6 cut(s) | 1654, 2097, 2230, 2593, 3067, 3077 |
| BseJI | GATNNNNATC | 2 cut(s) | 2144, 2989 |
| BseMI | GCAATG | 6 cut(s) | 596, 840, 1656, 1761, 2114, 2663 |
| BseMII | CTCAG | 7 cut(s) | 392, 452, 755, 836, 935, 2215, 2806 |
| BseNI | ACTGG | 5 cut(s) | 484, 1496, 1630, 2303, 2617 |
| BseRI | GAGGAG | 3 cut(s) | 84, 87, 2341 |
| BseXI | GCAGC | 7 cut(s) | 149, 1146, 1227, 1633, 1814, 1899, 3050 |
| BsgI | GTGCAG | 3 cut(s) | 1364, 1427, 1794 |
| Bsh1285I | CGRYCG | 2 cut(s) | 36, 1431 |
| BshFI | GGCC | 7 cut(s) | 662, 1822, 2068, 2302, 2310, 2557, 2978 |
| BshNI | GGYRCC | 2 cut(s) | 2230, 2373 |
| BshTI | ACCGGT | 1 cut(s) | 3113 |
| BshVI | ATCGAT | 1 cut(s) | 540 |
| BsiEI | CGRYCG | 2 cut(s) | 36, 1431 |
| BsiHKAI | GWGCWC | 4 cut(s) | 449, 702, 922, 999 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| BsiSI | CCGG | 8 cut(s) | 1431, 2167, 2717, 2737, 2862, 2975, 3014, 3114 |
| BslFI | GGGAC | 4 cut(s) | 363, 846, 1198, 2719 |
| BsmAI | GTCTC | 9 cut(s) | 202, 485, 1176, 1403, 1590, 1774, 2021, 2431, 2496 |
| BsmBI | CGTCTC | 2 cut(s) | 1590, 1774 |
| BsmFI | GGGAC | 4 cut(s) | 363, 846, 1198, 2719 |
| BsmI | GAATGC | 3 cut(s) | 402, 2139, 2173 |
| BsnI | GGCC | 7 cut(s) | 662, 1822, 2068, 2302, 2310, 2557, 2978 |
| BsoBI | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| Bsp119I | TTCGAA | 1 cut(s) | 2104 |
| Bsp1286I | GDGCHC | 7 cut(s) | 449, 533, 702, 922, 999, 1879, 2869 |
| Bsp1407I | TGTACA | 1 cut(s) | 1119 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 822, 921 |
| BspACI | CCGC | 1 cut(s) | 1843 |
| BspANI | GGCC | 7 cut(s) | 662, 1822, 2068, 2302, 2310, 2557, 2978 |
| BspCNI | CTCAG | 7 cut(s) | 393, 451, 754, 835, 934, 2214, 2805 |
| BspDI | ATCGAT | 1 cut(s) | 540 |
| BspLI | GGNNCC | 7 cut(s) | 862, 1085, 2232, 2375, 2567, 2859, 3046 |
| BspMAI | CTGCAG | 2 cut(s) | 1164, 1384 |
| BspMI | ACCTGC | 2 cut(s) | 62, 1336 |
| BspOI | GCTAGC | 1 cut(s) | 1932 |
| BspPI | GGATC | 5 cut(s) | 15, 1985, 2339, 2456, 2474 |
| BspQI | GCTCTTC | 1 cut(s) | 437 |
| BspT104I | TTCGAA | 1 cut(s) | 2104 |
| BspT107I | GGYRCC | 2 cut(s) | 2230, 2373 |
| BsrBI | CCGCTC | 1 cut(s) | 1843 |
| BsrDI | GCAATG | 6 cut(s) | 596, 840, 1656, 1761, 2114, 2663 |
| BsrFI | RCCGGY | 3 cut(s) | 1430, 3013, 3113 |
| BsrGI | TGTACA | 1 cut(s) | 1119 |
| BsrI | ACTGG | 5 cut(s) | 484, 1496, 1630, 2303, 2617 |
| BssAI | RCCGGY | 3 cut(s) | 1430, 3013, 3113 |
| BssECI | CCNNGG | 7 cut(s) | 426, 1145, 2063, 2528, 2861, 2862, 2880 |
| BssNAI | GTATAC | 1 cut(s) | 329 |
| BssT1I | CCWWGG | 4 cut(s) | 426, 2063, 2528, 2880 |
| Bst1107I | GTATAC | 1 cut(s) | 329 |
| Bst2UI | CCWGG | 4 cut(s) | 1146, 2831, 2958, 3136 |
| Bst4CI | ACNGT | 6 cut(s) | 213, 600, 883, 1532, 1567, 2577 |
| Bst6I | CTCTTC | 4 cut(s) | 437, 1001, 1725, 3008 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1785, 1808, 3131 |
| BstAUI | TGTACA | 1 cut(s) | 1119 |
| BstBI | TTCGAA | 1 cut(s) | 2104 |
| BstC8I | GCNNGC | 6 cut(s) | 698, 1480, 1930, 2754, 2836, 3127 |
| BstF5I | GGATG | 6 cut(s) | 1654, 2097, 2230, 2593, 3067, 3077 |
| BstH2I | RGCGCY | 1 cut(s) | 2880 |
| BstHHI | GCGC | 1 cut(s) | 2879 |
| BstMAI | GTCTC | 9 cut(s) | 202, 485, 1176, 1403, 1590, 1774, 2021, 2431, 2496 |
| BstMCI | CGRYCG | 2 cut(s) | 36, 1431 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 503, 1240, 1763, 1785, 1808, 1874, 2465, 3044, 3131 |
| BstNI | CCWGG | 4 cut(s) | 1146, 2831, 2958, 3136 |
| BstNSI | RCATGY | 1 cut(s) | 3013 |
| BstSCI | CCNGG | 9 cut(s) | 1144, 2166, 2715, 2735, 2829, 2860, 2861, 2956, 3134 |
| BstSFI | CTRYAG | 3 cut(s) | 1160, 1267, 1380 |
| BstV1I | GCAGC | 7 cut(s) | 149, 1146, 1227, 1633, 1814, 1899, 3050 |
| BstV2I | GAAGAC | 3 cut(s) | 764, 2635, 2943 |
| BstX2I | RGATCY | 2 cut(s) | 1438, 1854 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 623, 2854 |
| BstYI | RGATCY | 2 cut(s) | 1438, 1854 |
| BstZ17I | GTATAC | 1 cut(s) | 329 |
| Bsu15I | ATCGAT | 1 cut(s) | 540 |
| BsuI | GTATCC | 1 cut(s) | 1564 |
| BsuRI | GGCC | 7 cut(s) | 662, 1822, 2068, 2302, 2310, 2557, 2978 |
| BsuTUI | ATCGAT | 1 cut(s) | 540 |
| BtrI | CACGTC | 1 cut(s) | 778 |
| BtsCI | GGATG | 6 cut(s) | 1654, 2097, 2230, 2593, 3067, 3077 |
| BtsI | GCAGTG | 3 cut(s) | 1646, 1740, 1983 |
| BtsIMutI | CAGTG | 8 cut(s) | 888, 1537, 1563, 1646, 1740, 1983, 2209, 2368 |
| BveI | ACCTGC | 2 cut(s) | 62, 1336 |
| Cac8I | GCNNGC | 6 cut(s) | 698, 1480, 1930, 2754, 2836, 3127 |
| CaiI | CAGNNNCTG | 4 cut(s) | 54, 1808, 1982, 3141 |
| CfoI | GCGC | 1 cut(s) | 2879 |
| Cfr10I | RCCGGY | 3 cut(s) | 1430, 3013, 3113 |
| Cfr13I | GGNCC | 4 cut(s) | 51, 860, 1737, 2309 |
| Cfr9I | CCCGGG | 1 cut(s) | 2861 |
| ClaI | ATCGAT | 1 cut(s) | 540 |
| CseI | GACGC | 1 cut(s) | 2745 |
| CspAI | ACCGGT | 1 cut(s) | 3113 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 947, 982 |
| DraI | TTTAAA | 1 cut(s) | 66 |
| DraIII | CACNNNGTG | 3 cut(s) | 917, 1641, 3131 |
| DriI | GACNNNNNGTC | 1 cut(s) | 875 |
| EaeI | YGGCCR | 2 cut(s) | 660, 1820 |
| Eam1104I | CTCTTC | 4 cut(s) | 437, 1001, 1725, 3008 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 875 |
| EarI | CTCTTC | 4 cut(s) | 437, 1001, 1725, 3008 |
| Ecl136II | GAGCTC | 1 cut(s) | 997 |
| Eco130I | CCWWGG | 4 cut(s) | 426, 2063, 2528, 2880 |
| Eco147I | AGGCCT | 2 cut(s) | 2068, 2557 |
| Eco24I | GRGCYC | 4 cut(s) | 533, 999, 1879, 2869 |
| Eco32I | GATATC | 4 cut(s) | 252, 1324, 1890, 2419 |
| Eco47I | GGWCC | 3 cut(s) | 51, 860, 1737 |
| Eco53kI | GAGCTC | 1 cut(s) | 997 |
| Eco57I | CTGAAG | 1 cut(s) | 776 |
| Eco88I | CYCGRG | 3 cut(s) | 1960, 2498, 2861 |
| EcoICRI | GAGCTC | 1 cut(s) | 997 |
| EcoO109I | RGGNCCY | 2 cut(s) | 51, 860 |
| EcoRII | CCWGG | 4 cut(s) | 1144, 2829, 2956, 3134 |
| EcoRV | GATATC | 4 cut(s) | 252, 1324, 1890, 2419 |
| EcoT14I | CCWWGG | 4 cut(s) | 426, 2063, 2528, 2880 |
| EcoT22I | ATGCAT | 2 cut(s) | 1656, 2212 |
| EcoT38I | GRGCYC | 4 cut(s) | 533, 999, 1879, 2869 |
| ErhI | CCWWGG | 4 cut(s) | 426, 2063, 2528, 2880 |
| Esp3I | CGTCTC | 2 cut(s) | 1590, 1774 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 59, 91, 1098, 1130, 2331, 2363 |
| FaqI | GGGAC | 4 cut(s) | 363, 846, 1198, 2719 |
| FauNDI | CATATG | 3 cut(s) | 342, 1318, 2853 |
| FbaI | TGATCA | 3 cut(s) | 747, 1944, 3103 |
| FblI | GTMKAC | 3 cut(s) | 328, 1017, 3118 |
| Fnu4HI | GCNGC | 7 cut(s) | 163, 1160, 1216, 1647, 1803, 1913, 3039 |
| FokI | GGATG | 6 cut(s) | 1641, 2104, 2237, 2580, 3074, 3084 |
| FriOI | GRGCYC | 4 cut(s) | 533, 999, 1879, 2869 |
| Fsp4HI | GCNGC | 7 cut(s) | 163, 1160, 1216, 1647, 1803, 1913, 3039 |
| FspBI | CTAG | 3 cut(s) | 456, 1929, 2529 |
| GlaI | GCGC | 1 cut(s) | 2878 |
| GluI | GCNGC | 7 cut(s) | 163, 1160, 1216, 1647, 1803, 1913, 3039 |
| GsuI | CTGGAG | 3 cut(s) | 467, 1794, 3063 |
| HaeII | RGCGCY | 1 cut(s) | 2880 |
| HaeIII | GGCC | 7 cut(s) | 662, 1822, 2068, 2302, 2310, 2557, 2978 |
| HapII | CCGG | 8 cut(s) | 1431, 2167, 2717, 2737, 2862, 2975, 3014, 3114 |
| HgaI | GACGC | 1 cut(s) | 2745 |
| HhaI | GCGC | 1 cut(s) | 2879 |
| Hin6I | GCGC | 1 cut(s) | 2877 |
| HinP1I | GCGC | 1 cut(s) | 2877 |
| HincII | GTYRAC | 3 cut(s) | 40, 1018, 1501 |
| HindII | GTYRAC | 3 cut(s) | 40, 1018, 1501 |
| HindIII | AAGCTT | 3 cut(s) | 1042, 1755, 2836 |
| HinfI | GANTC | 9 cut(s) | 321, 638, 985, 1011, 1031, 1141, 1296, 1951, 2806 |
| HpaII | CCGG | 8 cut(s) | 1431, 2167, 2717, 2737, 2862, 2975, 3014, 3114 |
| HphI | GGTGA | 7 cut(s) | 188, 1538, 1981, 2149, 2421, 2557, 2686 |
| Hpy99I | CGWCG | 1 cut(s) | 1019 |
| HpyAV | CCTTC | 9 cut(s) | 386, 524, 543, 959, 1074, 1218, 1426, 2079, 2388 |
| HpyCH4III | ACNGT | 6 cut(s) | 213, 600, 883, 1532, 1567, 2577 |
| HpyCH4IV | ACGT | 4 cut(s) | 142, 337, 777, 1581 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 503, 1240, 1763, 1785, 1808, 1874, 2465, 3044, 3131 |
| HpySE526I | ACGT | 4 cut(s) | 142, 337, 777, 1581 |
| HspAI | GCGC | 1 cut(s) | 2877 |
| KpnI | GGTACC | 2 cut(s) | 2234, 2377 |
| Ksp22I | TGATCA | 3 cut(s) | 747, 1944, 3103 |
| LguI | GCTCTTC | 1 cut(s) | 437 |
| LmnI | GCTCC | 3 cut(s) | 942, 2636, 3044 |
| Lsp1109I | GCAGC | 7 cut(s) | 149, 1146, 1227, 1633, 1814, 1899, 3050 |
| LweI | GCATC | 8 cut(s) | 311, 727, 1660, 1663, 1789, 2197, 2692, 3062 |
| MaeI | CTAG | 3 cut(s) | 456, 1929, 2529 |
| MaeII | ACGT | 4 cut(s) | 142, 337, 777, 1581 |
| MaeIII | GTNAC | 5 cut(s) | 463, 626, 877, 1526, 2619 |
| MbiI | CCGCTC | 1 cut(s) | 1843 |
| MfeI | CAATTG | 1 cut(s) | 185 |
| MflI | RGATCY | 2 cut(s) | 1438, 1854 |
| MhlI | GDGCHC | 7 cut(s) | 449, 533, 702, 922, 999, 1879, 2869 |
| MlyI | GAGTC | 3 cut(s) | 994, 1290, 2815 |
| MmeI | TCCRAC | 4 cut(s) | 394, 694, 762, 964 |
| Mph1103I | ATGCAT | 2 cut(s) | 1656, 2212 |
| MroXI | GAANNNNTTC | 2 cut(s) | 896, 3002 |
| MseI | TTAA | 8 cut(s) | 65, 333, 1392, 1704, 1851, 2583, 3024, 3032 |
| MslI | CAYNNNNRTG | 3 cut(s) | 157, 589, 1816 |
| MspA1I | CMGCKG | 2 cut(s) | 826, 3041 |
| MspI | CCGG | 8 cut(s) | 1431, 2167, 2717, 2737, 2862, 2975, 3014, 3114 |
| MspR9I | CCNGG | 9 cut(s) | 1146, 2168, 2717, 2737, 2831, 2862, 2863, 2958, 3136 |
| MunI | CAATTG | 1 cut(s) | 185 |
| Mva1269I | GAATGC | 3 cut(s) | 402, 2139, 2173 |
| MvaI | CCWGG | 4 cut(s) | 1146, 2831, 2958, 3136 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 503, 1240, 1763, 1785, 1808, 1874, 2465, 3044, 3131 |
| NciI | CCSGG | 5 cut(s) | 2168, 2717, 2737, 2862, 2863 |
| NdeI | CATATG | 3 cut(s) | 342, 1318, 2853 |
| NheI | GCTAGC | 1 cut(s) | 1928 |
| NlaIV | GGNNCC | 7 cut(s) | 862, 1085, 2232, 2375, 2567, 2859, 3046 |
| NmuCI | GTSAC | 4 cut(s) | 463, 626, 877, 1526 |
| NsiI | ATGCAT | 2 cut(s) | 1656, 2212 |
| NspI | RCATGY | 1 cut(s) | 3013 |
| NspV | TTCGAA | 1 cut(s) | 2104 |
| OliI | CACNNNNGTG | 1 cut(s) | 1816 |
| PaqCI | CACCTGC | 1 cut(s) | 1336 |
| PceI | AGGCCT | 2 cut(s) | 2068, 2557 |
| PciSI | GCTCTTC | 1 cut(s) | 437 |
| PctI | GAATGC | 3 cut(s) | 402, 2139, 2173 |
| PdmI | GAANNNNTTC | 2 cut(s) | 896, 3002 |
| PfeI | GAWTC | 6 cut(s) | 321, 638, 1011, 1031, 1141, 1951 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1368, 2658 |
| PfoI | TCCNGGA | 1 cut(s) | 2735 |
| PinAI | ACCGGT | 1 cut(s) | 3113 |
| PkrI | GCNGC | 7 cut(s) | 164, 1161, 1217, 1648, 1804, 1914, 3040 |
| Ple19I | CGATCG | 1 cut(s) | 36 |
| PleI | GAGTC | 3 cut(s) | 993, 1290, 2814 |
| PpsI | GAGTC | 3 cut(s) | 993, 1290, 2814 |
| PpuMI | RGGWCCY | 2 cut(s) | 51, 860 |
| Psp124BI | GAGCTC | 1 cut(s) | 999 |
| Psp5II | RGGWCCY | 2 cut(s) | 51, 860 |
| Psp6I | CCWGG | 4 cut(s) | 1144, 2829, 2956, 3134 |
| PspGI | CCWGG | 4 cut(s) | 1144, 2829, 2956, 3134 |
| PspN4I | GGNNCC | 7 cut(s) | 862, 1085, 2232, 2375, 2567, 2859, 3046 |
| PspPI | GGNCC | 4 cut(s) | 51, 860, 1737, 2309 |
| PspPPI | RGGWCCY | 2 cut(s) | 51, 860 |
| PstI | CTGCAG | 2 cut(s) | 1164, 1384 |
| PstNI | CAGNNNCTG | 4 cut(s) | 54, 1808, 1982, 3141 |
| PsuI | RGATCY | 2 cut(s) | 1438, 1854 |
| PvuI | CGATCG | 1 cut(s) | 36 |
| PvuII | CAGCTG | 2 cut(s) | 826, 3041 |
| RseI | CAYNNNNRTG | 3 cut(s) | 157, 589, 1816 |
| SacI | GAGCTC | 1 cut(s) | 999 |
| SalI | GTCGAC | 1 cut(s) | 1016 |
| SapI | GCTCTTC | 1 cut(s) | 437 |
| SaqAI | TTAA | 8 cut(s) | 65, 333, 1392, 1704, 1851, 2583, 3024, 3032 |
| SatI | GCNGC | 7 cut(s) | 163, 1160, 1216, 1647, 1803, 1913, 3039 |
| Sau96I | GGNCC | 4 cut(s) | 51, 860, 1737, 2309 |
| ScaI | AGTACT | 1 cut(s) | 1073 |
| SchI | GAGTC | 3 cut(s) | 994, 1290, 2815 |
| ScrFI | CCNGG | 9 cut(s) | 1146, 2168, 2717, 2737, 2831, 2862, 2863, 2958, 3136 |
| SduI | GDGCHC | 7 cut(s) | 449, 533, 702, 922, 999, 1879, 2869 |
| SfaNI | GCATC | 8 cut(s) | 311, 727, 1660, 1663, 1789, 2197, 2692, 3062 |
| SfcI | CTRYAG | 3 cut(s) | 1160, 1267, 1380 |
| SfuI | TTCGAA | 1 cut(s) | 2104 |
| SinI | GGWCC | 3 cut(s) | 51, 860, 1737 |
| SmaI | CCCGGG | 1 cut(s) | 2863 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 157, 589, 1816 |
| SmlI | CTYRAG | 5 cut(s) | 1724, 1814, 2321, 2484, 2980 |
| SmoI | CTYRAG | 5 cut(s) | 1724, 1814, 2321, 2484, 2980 |
| SseBI | AGGCCT | 2 cut(s) | 2068, 2557 |
| SsiI | CCGC | 1 cut(s) | 1843 |
| SspMI | CTAG | 3 cut(s) | 456, 1929, 2529 |
| SstI | GAGCTC | 1 cut(s) | 999 |
| StuI | AGGCCT | 2 cut(s) | 2068, 2557 |
| StyD4I | CCNGG | 9 cut(s) | 1144, 2166, 2715, 2735, 2829, 2860, 2861, 2956, 3134 |
| StyI | CCWWGG | 4 cut(s) | 426, 2063, 2528, 2880 |
| TaaI | ACNGT | 6 cut(s) | 213, 600, 883, 1532, 1567, 2577 |
| TaiI | ACGT | 4 cut(s) | 145, 340, 780, 1584 |
| TatI | WGTACW | 5 cut(s) | 600, 1071, 1119, 1194, 1467 |
| TfiI | GAWTC | 6 cut(s) | 321, 638, 1011, 1031, 1141, 1951 |
| Tru1I | TTAA | 8 cut(s) | 65, 333, 1392, 1704, 1851, 2583, 3024, 3032 |
| Tru9I | TTAA | 8 cut(s) | 65, 333, 1392, 1704, 1851, 2583, 3024, 3032 |
| TscAI | CASTG | 8 cut(s) | 888, 1537, 1570, 1646, 1747, 1983, 2209, 2368 |
| TseFI | GTSAC | 4 cut(s) | 463, 626, 877, 1526 |
| TseI | GCWGC | 7 cut(s) | 162, 1159, 1215, 1646, 1802, 1912, 3038 |
| Tsp45I | GTSAC | 4 cut(s) | 463, 626, 877, 1526 |
| TspGWI | ACGGA | 2 cut(s) | 13, 1092 |
| TspMI | CCCGGG | 1 cut(s) | 2861 |
| TspRI | CASTG | 8 cut(s) | 888, 1537, 1570, 1646, 1747, 1983, 2209, 2368 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1368, 2658 |
| VpaK11BI | GGWCC | 3 cut(s) | 51, 860, 1737 |
| XapI | RAATTY | 4 cut(s) | 198, 690, 2724, 2947 |
| XceI | RCATGY | 1 cut(s) | 3013 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 564, 2851 |
| XmaI | CCCGGG | 1 cut(s) | 2861 |
| XmaJI | CCTAGG | 1 cut(s) | 2528 |
| XmiI | GTMKAC | 3 cut(s) | 328, 1017, 3118 |
| XmnI | GAANNNNTTC | 2 cut(s) | 896, 3002 |
| XspI | CTAG | 3 cut(s) | 456, 1929, 2529 |
| ZrmI | AGTACT | 1 cut(s) | 1073 |
| Zsp2I | ATGCAT | 2 cut(s) | 1656, 2212 |