Rmu_sc0000375.1_g000001

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000375.1
Physical Location & Seq
Forward (+)
1 .. 4143
4143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000375.1_g000001.1.cds

Sequence Viewer

Length: 1649 bp
ctgatagacgcgcacaatttgagaagttagagtacacagaagacgactacgagaaagaacttgagcacattgagcaggtttttactccgttggttgaaaaatgtaagaagtatggaagagcaatgcgtattggcacgaaccatgggagcctttcagatcgtataatgagctactatggagattcacctagaggaatggtagaatctgcatttgagtttgcgaggatctgcaggaagttggactatcataactttcttttctcaatgaaagcaagcaatccggttatcatggtccaagcttatcgtcttcttgtggctgaaatgtatgttcaaggctgggattatccattacacttgggtgtcactgaagctggagaaggtgaggatggacggatgaaatctgcaattggtattgggacccttcttcaggatggtttgggtgatacaattagggtttcacttactgaagcacccgaggaggagatcgatccctgcaaaagattggccaaccttggtaaaagagcagctgatctccagcaaggagtggatccatttgaagagaaacaccgacattactttgattttcagcggcgatctggtcaactgccggtgcaaaaggagggtgatgaggtggattatagaggggtcctgcatcgtgatggctcagttctaatgtcagtctcccttgatcagttgaagacaccagagcttctgtacaagtcacttgcaacaaaacttgtcgtgggcatgccatttaaggatctggcaacagttgactcgatcttattgagacaactaccacctgttgatgacgttgattctcgtctggctctcaaaaggttgatagatgtaagtatgggtgttataacgccattgtcagagcagcttacgaaaccattaccaaatgccatggttctagtaaattcaaaggaattatcaactggtgcatacaagcttttgccagaaggcacacgcttggttgtctcggtctgtggtgatgaaccctatgaagttctggatcttctcaaaggccttgatgttacaatgcttctccatgacctgccattcagtgaagataaaataagccgagtgcatgcagcaaggaggctttttgagtatctgggagacaatgatctaaactttcctgtaatacaccatattcagtttccaagtggaattcatagggatgacttggttattggtgctggtaccaatgtgggagcccttttagtagatgggcttggagatggtctcctattagaagcccctgacaaggatttcgagttcattagaaacacatctttcaatctactacaaggttgtagaatgcggaacacaaagacggagtatgtctcatgcccatcatgtggaagaactttgtttgatctgcaagaaataagcgcacaaatacgagagaagacatcacacttgcctggtgtttcaattgcaatcatgggttgcattgtaaatggacctggggagatggcagatgcagacttcgggtatgttggtggtgctcctggaaagattgatctttatgttgggaagaccgtggtgaagcgtggaatagagatggagcatgcaactgatgccttgatccagctaataaaagatcatgatcgctgggttgagcctccagcagaagagtga

Protein Analysis

548

Amino Acids

61.2

Weight (kDa)

5.17

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 865
Acc36I ACCTGC 2 cut(s) 66, 1067
Acc65I GGTACC 1 cut(s) 1207
AccB1I GGYRCC 1 cut(s) 1207
AccB7I CCANNNNNTGG 1 cut(s) 1366
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 588, 1329
AclWI GGATC 7 cut(s) 232, 481, 541, 554, 767, 1025, 1590
AcoI YGGCCR 1 cut(s) 503
AcsI RAATTY 2 cut(s) 921, 1175
AcuI CTGAAG 3 cut(s) 386, 409, 485
AfaI GTAC 3 cut(s) 34, 715, 1209
AfiI CCNNNNNNNGG 3 cut(s) 426, 1272, 1366
AgsI TTSAA 7 cut(s) 97, 331, 556, 696, 926, 1305, 1442
AjnI CCWGG 3 cut(s) 1431, 1473, 1518
AleI CACNNNNGTG 1 cut(s) 356
AloI GAACNNNNNNTCC 2 cut(s) 1267, 1299
AluBI AGCT 8 cut(s) 170, 298, 370, 526, 708, 885, 954, 1602
AluI AGCT 8 cut(s) 170, 298, 370, 526, 708, 885, 954, 1602
Alw21I GWGCWC 2 cut(s) 68, 1518
Alw26I GTCTC 6 cut(s) 684, 783, 987, 1118, 1255, 1356
AlwI GGATC 7 cut(s) 232, 481, 541, 554, 767, 1025, 1590
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 503, 1029
ApeKI GCWGC 3 cut(s) 523, 882, 1096
ApoI RAATTY 2 cut(s) 921, 1175
ArsI GACNNNNNNTTYG 2 cut(s) 1261, 1293
Asp718I GGTACC 1 cut(s) 1207
AspLEI GCGC 2 cut(s) 13, 1402
AspS9I GGNCC 4 cut(s) 291, 416, 645, 1471
AsuHPI GGTGA 6 cut(s) 176, 391, 451, 634, 1006, 1566
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 4 cut(s) 291, 416, 645, 1471
BaeI ACNNNNGTAYC 2 cut(s) 1199, 1232
BalI TGGCCA 1 cut(s) 505
BamHI GGATCC 1 cut(s) 546
BanI GGYRCC 1 cut(s) 1207
BanII GRGCYC 1 cut(s) 1224
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BbsI GAAGAC 5 cut(s) 47, 298, 703, 1423, 1552
Bbv12I GWGCWC 2 cut(s) 68, 1518
BbvI GCAGC 3 cut(s) 535, 894, 1108
BccI CCATC 8 cut(s) 379, 424, 652, 1228, 1240, 1368, 1476, 1566
BciT130I CCWGG 3 cut(s) 1433, 1475, 1520
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 6 cut(s) 684, 783, 987, 1118, 1255, 1356
BfaI CTAG 2 cut(s) 188, 916
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 66, 1067
BisI GCNGC 4 cut(s) 524, 589, 883, 1097
BlsI GCNGC 4 cut(s) 525, 590, 884, 1098
Bme1390I CCNGG 3 cut(s) 1433, 1475, 1520
Bme18I GGWCC 4 cut(s) 291, 416, 645, 1471
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 291, 416, 645, 1471
BmiI GGNNCC 7 cut(s) 148, 417, 418, 548, 646, 1209, 1221
BmrFI CCNGG 3 cut(s) 1433, 1475, 1520
BmsI GCATC 3 cut(s) 660, 1479, 1578
BpiI GAAGAC 5 cut(s) 47, 298, 703, 1423, 1552
BplI GAGNNNNNCTC 4 cut(s) 1235, 1267, 1336, 1368
BpmI CTGGAG 3 cut(s) 392, 517, 1619
BpuEI CTTGAG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 485
BsaBI GATNNNNATC 1 cut(s) 1616
BsaI GGTCTC 1 cut(s) 1255
BsaJI CCNNGG 6 cut(s) 141, 473, 510, 908, 1474, 1550
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 1272, 1366
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 945
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 1616
BseBI CCWGG 3 cut(s) 1433, 1475, 1520
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 6 cut(s) 141, 473, 510, 908, 1474, 1550
BseGI GGATG 4 cut(s) 390, 398, 435, 1191
BseJI GATNNNNATC 1 cut(s) 1616
BseLI CCNNNNNNNGG 3 cut(s) 426, 1272, 1366
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 1 cut(s) 945
BseRI GAGGAG 2 cut(s) 490, 493
BseXI GCAGC 3 cut(s) 535, 894, 1108
BseYI CCCAGC 2 cut(s) 335, 1622
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 505, 1031
BshNI GGYRCC 1 cut(s) 1207
BshVI ATCGAT 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 68, 1518
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 2 cut(s) 280, 607
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 3 cut(s) 426, 1272, 1366
BsmAI GTCTC 6 cut(s) 684, 783, 987, 1118, 1255, 1356
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 1331
BsnI GGCC 2 cut(s) 505, 1031
Bso31I GGTCTC 1 cut(s) 1255
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 68, 1224, 1518
Bsp1407I TGTACA 1 cut(s) 713
Bsp19I CCATGG 2 cut(s) 141, 908
BspACI CCGC 2 cut(s) 588, 1329
BspANI GGCC 2 cut(s) 505, 1031
BspCNI CTCAG 1 cut(s) 676
BspDI ATCGAT 1 cut(s) 485
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 1614
BspLI GGNNCC 7 cut(s) 148, 417, 418, 548, 646, 1209, 1221
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 2 cut(s) 66, 1067
BspPI GGATC 7 cut(s) 232, 481, 541, 554, 767, 1025, 1590
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 1207
BspTNI GGTCTC 1 cut(s) 1255
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 606
BsrGI TGTACA 1 cut(s) 713
BsrI ACTGG 1 cut(s) 945
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 6 cut(s) 141, 473, 510, 908, 1474, 1550
BssT1I CCWWGG 3 cut(s) 141, 510, 908
Bst2UI CCWGG 3 cut(s) 1433, 1475, 1520
Bst4CI ACNGT 2 cut(s) 771, 1551
Bst6I CTCTTC 3 cut(s) 111, 551, 1637
BstAPI GCANNNNNTGC 1 cut(s) 1588
BstAUI TGTACA 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 273, 748, 1094, 1580
BstDEI CTNAG 1 cut(s) 663
BstDSI CCRYGG 3 cut(s) 141, 908, 1550
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 4 cut(s) 390, 398, 435, 1191
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 2 cut(s) 13, 1402
BstMAI GTCTC 6 cut(s) 684, 783, 987, 1118, 1255, 1356
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1588
BstNI CCWGG 3 cut(s) 1433, 1475, 1520
BstNSI RCATGY 3 cut(s) 750, 1096, 1582
BstSCI CCNGG 3 cut(s) 1431, 1473, 1518
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 535, 894, 1108
BstV2I GAAGAC 5 cut(s) 47, 298, 703, 1423, 1552
BstX2I RGATCY 4 cut(s) 224, 546, 759, 1017
BstYI RGATCY 4 cut(s) 224, 546, 759, 1017
Bsu15I ATCGAT 1 cut(s) 485
BsuRI GGCC 2 cut(s) 505, 1031
BsuTUI ATCGAT 1 cut(s) 485
BtgI CCRYGG 3 cut(s) 141, 908, 1550
BtsCI GGATG 4 cut(s) 390, 398, 435, 1191
BtsIMutI CAGTG 2 cut(s) 362, 1074
BveI ACCTGC 2 cut(s) 66, 1067
Cac8I GCNNGC 4 cut(s) 273, 748, 1094, 1580
CciI TCATGA 1 cut(s) 1614
CfoI GCGC 2 cut(s) 13, 1402
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 4 cut(s) 291, 416, 645, 1471
ClaI ATCGAT 1 cut(s) 485
CseI GACGC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 33, 714, 1208
CviQI GTAC 3 cut(s) 33, 714, 1208
DdeI CTNAG 1 cut(s) 663
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 3 cut(s) 111, 551, 1637
EarI CTCTTC 3 cut(s) 111, 551, 1637
Eco130I CCWWGG 3 cut(s) 141, 510, 908
Eco147I AGGCCT 1 cut(s) 1031
Eco24I GRGCYC 1 cut(s) 1224
Eco31I GGTCTC 1 cut(s) 1255
Eco47I GGWCC 4 cut(s) 291, 416, 645, 1471
Eco57I CTGAAG 3 cut(s) 386, 409, 485
Eco88I CYCGRG 1 cut(s) 472
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoO109I RGGNCCY 2 cut(s) 416, 645
EcoRI GAATTC 1 cut(s) 1175
EcoRII CCWGG 3 cut(s) 1431, 1473, 1518
EcoT14I CCWWGG 3 cut(s) 141, 510, 908
EcoT38I GRGCYC 1 cut(s) 1224
ErhI CCWWGG 3 cut(s) 141, 510, 908
FaqI GGGAC 1 cut(s) 429
FbaI TGATCA 1 cut(s) 687
Fnu4HI GCNGC 4 cut(s) 524, 589, 883, 1097
FokI GGATG 4 cut(s) 397, 405, 442, 1198
FriOI GRGCYC 1 cut(s) 1224
Fsp4HI GCNGC 4 cut(s) 524, 589, 883, 1097
FspBI CTAG 2 cut(s) 188, 916
GlaI GCGC 2 cut(s) 12, 1401
GluI GCNGC 4 cut(s) 524, 589, 883, 1097
GsaI CCCAGC 2 cut(s) 339, 1626
GsuI CTGGAG 3 cut(s) 392, 517, 1619
HaeIII GGCC 2 cut(s) 505, 1031
HapII CCGG 2 cut(s) 280, 607
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 13, 1402
Hin6I GCGC 2 cut(s) 11, 1400
HinP1I GCGC 2 cut(s) 11, 1400
HincII GTYRAC 2 cut(s) 601, 774
HindII GTYRAC 2 cut(s) 601, 774
HindIII AAGCTT 2 cut(s) 296, 952
HinfI GANTC 4 cut(s) 181, 202, 775, 817
HpaII CCGG 2 cut(s) 280, 607
HphI GGTGA 6 cut(s) 176, 391, 451, 634, 1006, 1566
Hpy166II GTNNAC 3 cut(s) 35, 601, 774
Hpy188I TCNGA 2 cut(s) 156, 879
Hpy188III TCNNGA 4 cut(s) 427, 655, 1015, 1615
Hpy8I GTNNAC 3 cut(s) 35, 601, 774
HpyAV CCTTC 3 cut(s) 370, 430, 958
HpyCH4III ACNGT 2 cut(s) 771, 1551
HpyCH4IV ACGT 1 cut(s) 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1588
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 1 cut(s) 812
HspAI GCGC 2 cut(s) 11, 1400
KflI GGGWCCC 1 cut(s) 416
KpnI GGTACC 1 cut(s) 1211
Ksp22I TGATCA 1 cut(s) 687
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 146, 1219, 1521, 1575
Lsp1109I GCAGC 3 cut(s) 535, 894, 1108
LweI GCATC 3 cut(s) 660, 1479, 1578
MaeI CTAG 2 cut(s) 188, 916
MaeII ACGT 1 cut(s) 812
MaeIII GTNAC 3 cut(s) 360, 719, 1038
MfeI CAATTG 2 cut(s) 404, 1442
MflI RGATCY 4 cut(s) 224, 546, 759, 1017
MhlI GDGCHC 3 cut(s) 68, 1224, 1518
MlsI TGGCCA 1 cut(s) 505
MluCI AATT 7 cut(s) 16, 404, 446, 921, 931, 1175, 1442
MluNI TGGCCA 1 cut(s) 505
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 505
MscI TGGCCA 1 cut(s) 505
MseI TTAA 1 cut(s) 755
MslI CAYNNNNRTG 3 cut(s) 356, 656, 1184
Msp20I TGGCCA 1 cut(s) 505
MspA1I CMGCKG 2 cut(s) 526, 588
MspI CCGG 2 cut(s) 280, 607
MspR9I CCNGG 3 cut(s) 1433, 1475, 1520
MunI CAATTG 2 cut(s) 404, 1442
Mva1269I GAATGC 1 cut(s) 1331
MvaI CCWGG 3 cut(s) 1433, 1475, 1520
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 72, 1588
NcoI CCATGG 2 cut(s) 141, 908
NlaIV GGNNCC 7 cut(s) 148, 417, 418, 548, 646, 1209, 1221
NmeAIII GCCGAG 1 cut(s) 1111
NmuCI GTSAC 2 cut(s) 360, 719
NspI RCATGY 3 cut(s) 750, 1096, 1582
OliI CACNNNNGTG 1 cut(s) 356
PaeI GCATGC 3 cut(s) 750, 1096, 1582
PagI TCATGA 1 cut(s) 1614
PceI AGGCCT 1 cut(s) 1031
PciSI GCTCTTC 1 cut(s) 111
PctI GAATGC 1 cut(s) 1331
PfeI GAWTC 3 cut(s) 181, 202, 817
PflMI CCANNNNNTGG 1 cut(s) 1366
PfoI TCCNGGA 1 cut(s) 1518
PkrI GCNGC 4 cut(s) 525, 590, 884, 1098
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
PpuMI RGGWCCY 2 cut(s) 416, 645
PsiI TTATAA 1 cut(s) 865
Psp5II RGGWCCY 2 cut(s) 416, 645
Psp6I CCWGG 3 cut(s) 1431, 1473, 1518
PspFI CCCAGC 2 cut(s) 335, 1622
PspGI CCWGG 3 cut(s) 1431, 1473, 1518
PspN4I GGNNCC 7 cut(s) 148, 417, 418, 548, 646, 1209, 1221
PspPI GGNCC 4 cut(s) 291, 416, 645, 1471
PspPPI RGGWCCY 2 cut(s) 416, 645
PstI CTGCAG 1 cut(s) 232
PsuI RGATCY 4 cut(s) 224, 546, 759, 1017
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 3 cut(s) 34, 715, 1209
RsaNI GTAC 3 cut(s) 33, 714, 1208
RseI CAYNNNNRTG 3 cut(s) 356, 656, 1184
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 4 cut(s) 524, 589, 883, 1097
Sau96I GGNCC 4 cut(s) 291, 416, 645, 1471
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 3 cut(s) 1433, 1475, 1520
SduI GDGCHC 3 cut(s) 68, 1224, 1518
SfaNI GCATC 3 cut(s) 660, 1479, 1578
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 4 cut(s) 291, 416, 645, 1471
SmiMI CAYNNNNRTG 3 cut(s) 356, 656, 1184
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SphI GCATGC 3 cut(s) 750, 1096, 1582
Sse9I AATT 7 cut(s) 16, 404, 446, 921, 931, 1175, 1442
SseBI AGGCCT 1 cut(s) 1031
SsiI CCGC 2 cut(s) 588, 1329
SspMI CTAG 2 cut(s) 188, 916
StuI AGGCCT 1 cut(s) 1031
StyD4I CCNGG 3 cut(s) 1431, 1473, 1518
StyI CCWWGG 3 cut(s) 141, 510, 908
TaaI ACNGT 2 cut(s) 771, 1551
TaiI ACGT 1 cut(s) 815
TaqI TCGA 3 cut(s) 485, 778, 1280
TaqII GACCGA 1 cut(s) 975
TasI AATT 7 cut(s) 16, 404, 446, 921, 931, 1175, 1442
TatI WGTACW 2 cut(s) 32, 713
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 3 cut(s) 181, 202, 817
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 2 cut(s) 369, 1074
TseFI GTSAC 2 cut(s) 360, 719
TseI GCWGC 3 cut(s) 523, 882, 1096
Tsp45I GTSAC 2 cut(s) 360, 719
TspDTI ATGAA 6 cut(s) 280, 409, 1013, 1022, 1168, 1275
TspGWI ACGGA 3 cut(s) 77, 405, 1357
TspRI CASTG 2 cut(s) 369, 1074
Van91I CCANNNNNTGG 1 cut(s) 1366
VpaK11BI GGWCC 4 cut(s) 291, 416, 645, 1471
XagI CCTNNNNNAGG 1 cut(s) 424
XapI RAATTY 2 cut(s) 921, 1175
XceI RCATGY 3 cut(s) 750, 1096, 1582
XspI CTAG 2 cut(s) 188, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.