Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0019089

Physical Location & Seq

Genomic Coordinates Reverse (-)

280877 .. 284476

Gene Structure 3600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgagtggtgcggattgggagttcattgctgagaaggacgaacgatgtgggtttcctataattgccttacaggagctaggtgcccgaaattgggaagttctcacaggtaaacatcgaatatcggtgatttggtctgatgttcattacaggactttggcccgcctcatatccaagcatgcccagctctactctgagatgcctgctgctgaaaccattgtttatcagaaggacaatctggtgtatccaactatgaggtctgcatttgtcgatatagttaaaactcatggatttcgaggattgtatgctggattatcaccaacactggttgagattgttccttatgcaggcttgcaatttggtacctatgacacatttaagcgctggaccatgattgaaggactacagaggcacccaagatatggggctcgagtagagcaccgtgcctacagcaatatggttgatgctttgcgacgaatagtgcagaaagaaggctgggctggtctctataagggaatagtcccatcaactgtcaaagctgcttctgctggtgcaattgaaggactacagaggcacccaagatatggggctcgagtagagcaccgtgcctacagcaatatggttgatgctttgcgacgaatagtgcagaaagaaggctgggctggtctttataagggaatagtcccatcaactgtcaaagctgctcctgctggtgcagtgacatttgtggcaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

244

Amino Acids

27.35

Weight (kDa)

9.68

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	80 - 129	5.6e-13	Mitochondrial carrier protein
Mito_carr	PF00153	147 - 185	3.8e-07	Mitochondrial carrier protein
Mito_carr	PF00153	201 - 243	1.5e-09	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019089)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000493.1_g000061 Rmu_sc0013338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00221180
rosa_rugosa	Rorug06G0103000
rosa_samantha	Rh2AG116600 Rh6AG143100 Rh6BG143400 Rh6CG140000 Rh6DG127700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	4 cut(s)	80, 359, 408, 570
AccB7I	CCANNNNNTGG	2 cut(s)	419, 581
AciI	CCGC	2 cut(s)	11, 160
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	380
AfiI	CCNNNNNNNGG	5 cut(s)	90, 91, 344, 419, 581
AgsI	TTSAA	2 cut(s)	395, 557
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	5 cut(s)	76, 184, 536, 698, 732
AluI	AGCT	5 cut(s)	76, 184, 536, 698, 732
Alw21I	GWGCWC	2 cut(s)	438, 600
Alw26I	GTCTC	1 cut(s)	506
Ama87I	CYCGRG	2 cut(s)	426, 588
Aor51HI	AGCGCT	1 cut(s)	380
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	203, 536, 698
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	157, 384
AsuHPI	GGTGA	2 cut(s)	136, 306
AvaI	CYCGRG	2 cut(s)	426, 588
AvaII	GGWCC	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	85
BanI	GGYRCC	4 cut(s)	80, 359, 408, 570
BanII	GRGCYC	2 cut(s)	427, 589
Bbv12I	GWGCWC	2 cut(s)	438, 600
BbvI	GCAGC	3 cut(s)	190, 523, 685
BccI	CCATC	2 cut(s)	529, 691
BciVI	GTATCC	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	4 cut(s)	401, 445, 563, 607
BfoI	RGCGCY	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	3 cut(s)	204, 537, 699
BlsI	GCNGC	3 cut(s)	205, 538, 700
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	2 cut(s)	426, 588
BmgT120I	GGNCC	2 cut(s)	157, 384
BmiI	GGNNCC	4 cut(s)	82, 361, 410, 572
BmsI	GCATC	3 cut(s)	186, 451, 613
BsaI	GGTCTC	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 91, 344, 419, 581
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	5 cut(s)	90, 91, 344, 419, 581
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	21, 183
BseNI	ACTGG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	190, 523, 685
BseYI	CCCAGC	3 cut(s)	180, 492, 654
BsgI	GTGCAG	3 cut(s)	500, 662, 732
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	4 cut(s)	80, 359, 408, 570
BsiHKAI	GWGCWC	2 cut(s)	438, 600
BsiHKCI	CYCGRG	2 cut(s)	426, 588
BslFI	GGGAC	2 cut(s)	503, 665
BslI	CCNNNNNNNGG	5 cut(s)	90, 91, 344, 419, 581
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	503, 665
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	2 cut(s)	426, 588
Bsp1286I	GDGCHC	5 cut(s)	85, 427, 438, 589, 600
BspACI	CCGC	2 cut(s)	11, 160
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	22, 184
BspLI	GGNNCC	4 cut(s)	82, 361, 410, 572
BspT107I	GGYRCC	4 cut(s)	80, 359, 408, 570
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	440, 529, 602, 691
BstC8I	GCNNGC	6 cut(s)	160, 177, 201, 346, 350, 730
BstDEI	CTNAG	2 cut(s)	30, 192
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 542, 704
BstNSI	RCATGY	1 cut(s)	179
BstSFI	CTRYAG	4 cut(s)	401, 445, 563, 607
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	190, 523, 685
BsuI	GTATCC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	320, 720
Cac8I	GCNNGC	6 cut(s)	160, 177, 201, 346, 350, 730
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	157, 384
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	3 cut(s)	176, 284, 388
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	30, 192
Eco24I	GRGCYC	2 cut(s)	427, 589
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	384
Eco47III	AGCGCT	1 cut(s)	380
Eco88I	CYCGRG	2 cut(s)	426, 588
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoT38I	GRGCYC	2 cut(s)	427, 589
FaeI	CATG	3 cut(s)	179, 287, 391
FaqI	GGGAC	2 cut(s)	503, 665
FatI	CATG	3 cut(s)	175, 283, 387
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	204, 537, 699
FriOI	GRGCYC	2 cut(s)	427, 589
Fsp4HI	GCNGC	3 cut(s)	204, 537, 699
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	204, 537, 699
GsaI	CCCAGC	3 cut(s)	184, 496, 658
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	179, 287, 391
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HphI	GGTGA	2 cut(s)	136, 306
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	136, 193, 225
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	2 cut(s)	474, 636
HpyAV	CCTTC	6 cut(s)	28, 220, 389, 482, 551, 644
HpyCH4III	ACNGT	4 cut(s)	440, 529, 602, 691
HpyCH4V	TGCA	7 cut(s)	260, 344, 352, 481, 551, 643, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 542, 704
HpyF3I	CTNAG	2 cut(s)	30, 192
Hsp92II	CATG	3 cut(s)	179, 287, 391
HspAI	GCGC	1 cut(s)	379
KpnI	GGTACC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	73, 706
Lsp1109I	GCAGC	3 cut(s)	190, 523, 685
LweI	GCATC	3 cut(s)	186, 451, 613
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	715
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	5 cut(s)	85, 427, 438, 589, 600
MluCI	AATT	4 cut(s)	60, 88, 353, 552
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	5 cut(s)	173, 246, 287, 399, 561
MseI	TTAA	2 cut(s)	276, 375
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	181, 542, 704
NlaIII	CATG	3 cut(s)	179, 287, 391
NlaIV	GGNNCC	4 cut(s)	82, 361, 410, 572
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PaeR7I	CTCGAG	2 cut(s)	426, 588
PflMI	CCANNNNNTGG	2 cut(s)	419, 581
PkrI	GCNGC	3 cut(s)	205, 538, 700
PsiI	TTATAA	1 cut(s)	669
PspFI	CCCAGC	3 cut(s)	180, 492, 654
PspN4I	GGNNCC	4 cut(s)	82, 361, 410, 572
PspPI	GGNCC	2 cut(s)	157, 384
PspXI	VCTCGAGB	2 cut(s)	426, 588
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	276, 375
SatI	GCNGC	3 cut(s)	204, 537, 699
Sau96I	GGNCC	2 cut(s)	157, 384
SduI	GDGCHC	5 cut(s)	85, 427, 438, 589, 600
SetI	ASST	9 cut(s)	78, 82, 109, 186, 257, 365, 538, 700, 734
SfaNI	GCATC	3 cut(s)	186, 451, 613
SfcI	CTRYAG	4 cut(s)	401, 445, 563, 607
Sfr274I	CTCGAG	2 cut(s)	426, 588
SinI	GGWCC	1 cut(s)	384
SlaI	CTCGAG	2 cut(s)	426, 588
SmlI	CTYRAG	2 cut(s)	426, 588
SmoI	CTYRAG	2 cut(s)	426, 588
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	4 cut(s)	60, 88, 353, 552
SsiI	CCGC	2 cut(s)	11, 160
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	4 cut(s)	440, 529, 602, 691
TaqI	TCGA	5 cut(s)	115, 267, 292, 427, 589
TasI	AATT	4 cut(s)	60, 88, 353, 552
Tru1I	TTAA	2 cut(s)	276, 375
Tru9I	TTAA	2 cut(s)	276, 375
TscAI	CASTG	2 cut(s)	327, 720
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	3 cut(s)	203, 536, 698
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	2 cut(s)	13, 131
TspRI	CASTG	2 cut(s)	327, 720
Van91I	CCANNNNNTGG	2 cut(s)	419, 581
VpaK11BI	GGWCC	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	342
XceI	RCATGY	1 cut(s)	179
XhoI	CTCGAG	2 cut(s)	426, 588
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.