Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019089

Physical Location & Seq

Genomic Coordinates Forward (+)

10489386 .. 10491997

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTGATCAGGACAGCACAACTTGGAGACAATAACTCTACTCCTTGCACTCAAGATTATCCTGATAATGTTCACTTAATGCAAATGCAATGGCAGGCTACTATAGGACCATGTAACACATCAGAGCCGAATGCTTGGAATACAGTAGAGAAAAGCAAATGGAGCATCTGTGTGGACTCATGGCTGACAAAATGGGGGACATGCTGCCCCATGTGCAAGCATGATATGAGAACAAAATCTGTGAATCCTGAGATCAAGAGAAGGACCTGGTTGGACGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

94

Amino Acids

10.88

Weight (kDa)

6.69

Isoelectric Point (pI)

28.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019089)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000493.1_g000061 Rmu_sc0013338.1_g000001
rosa_roxburghii	Rroxscaffold_3G00221180
rosa_rugosa	Rorug06G0103000
rosa_samantha	Rh2AG116600 Rh6AG143100 Rh6BG143400 Rh6CG140000 Rh6DG127700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	107, 264
AvaII	GGWCC	2 cut(s)	107, 264
BbvI	GCAGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	268
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	107, 264
BmgT120I	GGNCC	2 cut(s)	107, 264
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	6, 252
BspCNI	CTCAG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	95
BssMI	GATC	2 cut(s)	6, 252
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	96, 218
BstDEI	CTNAG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	9, 255
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	6, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 213
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	96, 218
CciI	TCATGA	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	107, 264
CsiI	ACCWGGT	1 cut(s)	266
CviAII	CATG	6 cut(s)	111, 180, 201, 211, 221, 282
CviJI	RGCY	3 cut(s)	98, 127, 184
CviKI_1	RGCY	3 cut(s)	98, 127, 184
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	8, 254
DpnII	GATC	2 cut(s)	6, 252
Eco47I	GGWCC	2 cut(s)	107, 264
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	266
FaeI	CATG	6 cut(s)	114, 183, 204, 214, 224, 285
FaiI	YATR	8 cut(s)	104, 112, 181, 202, 212, 222, 227, 283
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	6 cut(s)	110, 179, 200, 210, 220, 281
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	205
Hin1II	CATG	6 cut(s)	114, 183, 204, 214, 224, 285
HinfI	GANTC	3 cut(s)	176, 244, 278
Hpy166II	GTNNAC	2 cut(s)	73, 175
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	6 cut(s)	10, 53, 62, 248, 256, 282
Hpy8I	GTNNAC	2 cut(s)	73, 175
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	4 cut(s)	48, 82, 88, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 213
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	114, 183, 204, 214, 224, 285
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	6, 252
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	75, 80, 253, 261, 280
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	174
MabI	ACCWGGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	8, 254
MboI	GATC	2 cut(s)	6, 252
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	252
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	162, 213
NdeII	GATC	2 cut(s)	6, 252
NlaIII	CATG	6 cut(s)	114, 183, 204, 214, 224, 285
NspI	RCATGY	1 cut(s)	204
PagI	TCATGA	1 cut(s)	281
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	244, 278
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	107, 264
PspPPI	RGGWCCY	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	6, 252
Sau96I	GGNCC	2 cut(s)	107, 264
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	1 cut(s)	269
SexAI	ACCWGGT	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	107, 264
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	244, 278
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	107, 264
XceI	RCATGY	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.