Rroxscaffold_3G00221180

acyl-CoA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
3906923 .. 3912918
5996 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00221180.1

Sequence Viewer

Length: 234 bp
ATGCAATGCTCTCATCAAGGTACATTGACTACACTTGTTTTTTGGGGGATTATGTTGATCGGGACAGCACAACTTGGAGACAATAACTCTACTCCTTGCATTCAAGATTATCCTGATAATGTTCACTTAATGCAAATGCAGTGGCAGGCTACTATAGGACCATGTAACACATCAGAGCCGAATGCTTGGAATGCAGTAGAGAAAAGCAAATGGAGCAGGTATGCTTACATGTGA

Protein Analysis

77

Amino Acids

8.72

Weight (kDa)

5.34

Isoelectric Point (pI)

18.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019089)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AfaI GTAC 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 3 cut(s) 99, 187, 196
Bsp143I GATC 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 11
BssMI GATC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 191, 213
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 21
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviAII CATG 2 cut(s) 162, 229
CviJI RGCY 2 cut(s) 149, 178
CviKI_1 RGCY 2 cut(s) 149, 178
CviQI GTAC 1 cut(s) 21
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 158
FaeI CATG 2 cut(s) 165, 232
FaiI YATR 5 cut(s) 53, 155, 163, 222, 230
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 161, 228
Hin1II CATG 2 cut(s) 165, 232
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 61, 104, 113
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4V TGCA 5 cut(s) 4, 99, 133, 139, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 213
Hsp92II CATG 2 cut(s) 165, 232
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 3 cut(s) 126, 131, 202
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MseI TTAA 1 cut(s) 128
Mva1269I GAATGC 3 cut(s) 99, 187, 196
MwoI GCNNNNNNNGC 2 cut(s) 191, 213
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 165, 232
NspI RCATGY 1 cut(s) 232
PciI ACATGT 1 cut(s) 228
PctI GAATGC 3 cut(s) 99, 187, 196
PscI ACATGT 1 cut(s) 228
PspPI GGNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 128
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 158
SetI ASST 2 cut(s) 22, 221
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 146
TspRI CASTG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 158
XceI RCATGY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.