Rmu_sc0000517.1_g000015
MYB Family

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000517.1
OG0006643
Physical Location & Seq
Reverse (-)
54692 .. 55837
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
atggcagggtggtcggtgatagctgatgggtctgttgtagattgcgagactaagaaggaggaagagccggactgcttctcggaagcttcaaaacgcagcgtttcggggttgccggacaagctccggtgctggttcgatcagtttcttggggtttttctcaaggaaatatgtacccgagactcgctccggcctctgcctccgatgctcggaaatgggcagagggtggatttgtttaagctgttttgggctgtgagaaagaagggcgggtttgattgtgtttcggattccggggtttgggattttgttgcaggggagtgtgggttgggtttgagtttaggtggggctgtgaagttggtttacactaagtatttgtacctgcttgagaggcttttggagaataaggatttggaatggagtttgggtagtagtggcgttgatttggggaagcagttgatggatttgcaggatgagtttactgggttgtttccggaagttgctgatcggaaggtgaaagatagggcggagtatttgaatgcggagatgtccccgaagagtttgaaggacagtaatgaggtggccggtgtgggagaaaagtgtggtgggatgaagaagagtgttgataatgtggggttggagtgggatttggggactgtggagaaggtttcgaataatgtggctgggaatgtggatgtgatgaacagtatggaggatgctgggaagttgagtaacaatgaagaggtgaagagtgaggtggtggaatcgggtgcagggaagaaacttaatgatgacgacgacgattatatagatgtaatgatcgtgaatccagccactatggaagtgagttcttgtcgtaaaaggaagcgagagtccttttgcggaatgttgaattggattagaaagattgcagcagatccttgtgatccgtcagttggttcgataccagaaaggtcaaagtggaagtcctttgggaaggaagagaactggaagcgggttttgggtgctcgagaggccatgtttctgaagaggaatgctgattcagttgcagaaccgtttaactttcaatctcagagagaggcagagattggagaagcagctaaggacaatgtccgaatcaggagcctgttcattctcatccccggccagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID Myb_DNA-binding

Protein Analysis

381

Amino Acids

42.28

Weight (kDa)

4.97

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 54 - 125 3.9e-09 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 5 cut(s) 264, 521, 536, 876, 988
AclWI GGATC 2 cut(s) 905, 914
AcoI YGGCCR 2 cut(s) 576, 1138
AcuI CTGAAG 1 cut(s) 1040
AfaI GTAC 2 cut(s) 172, 374
AfiI CCNNNNNNNGG 3 cut(s) 206, 294, 929
AgsI TTSAA 5 cut(s) 90, 532, 559, 886, 1061
AjuI GAANNNNNNNTTGG 6 cut(s) 389, 421, 871, 903, 977, 1009
AluBI AGCT 5 cut(s) 23, 86, 121, 238, 1094
AluI AGCT 5 cut(s) 23, 86, 121, 238, 1094
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 2 cut(s) 41, 171
AlwI GGATC 2 cut(s) 905, 914
Ama87I CYCGRG 2 cut(s) 174, 1002
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 4 cut(s) 188, 576, 1008, 1138
ApeKI GCWGC 3 cut(s) 96, 905, 1091
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AsuC2I CCSGG 2 cut(s) 289, 1137
AsuHPI GGTGA 3 cut(s) 28, 520, 751
AsuII TTCGAA 1 cut(s) 665
AvaI CYCGRG 2 cut(s) 174, 1002
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 3 cut(s) 108, 917, 1103
BccI CCATC 2 cut(s) 20, 448
BcgI CGANNNNNNTGC 1 cut(s) 28
BcnI CCSGG 2 cut(s) 289, 1137
BcoDI GTCTC 2 cut(s) 41, 171
BfuAI ACCTGC 1 cut(s) 384
BisI GCNGC 3 cut(s) 97, 906, 1092
BlsI GCNGC 3 cut(s) 98, 907, 1093
Bme1390I CCNGG 2 cut(s) 289, 1137
BmeT110I CYCGRG 2 cut(s) 174, 1002
BmiI GGNNCC 1 cut(s) 1118
BmrFI CCNGG 2 cut(s) 289, 1137
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 192, 700
BmuI ACTGGG 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 168, 200
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 1 cut(s) 665
BpuEI CTTGAG 2 cut(s) 143, 401
BpuMI CCSGG 2 cut(s) 289, 1137
BsaJI CCNNGG 2 cut(s) 288, 1135
BsaWI WCCGGW 2 cut(s) 123, 487
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 406, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 294, 929
Bse118I RCCGGY 1 cut(s) 578
Bse1I ACTGG 3 cut(s) 481, 986, 1141
BseAI TCCGGA 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 288, 1135
BseGI GGATG 5 cut(s) 472, 609, 694, 715, 1131
BseLI CCNNNNNNNGG 3 cut(s) 206, 294, 929
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 3 cut(s) 481, 986, 1141
BseXI GCAGC 3 cut(s) 108, 917, 1103
BseYI CCCAGC 2 cut(s) 677, 713
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 4 cut(s) 190, 578, 1010, 1140
BsiHKAI GWGCWC 1 cut(s) 1003
BsiHKCI CYCGRG 2 cut(s) 174, 1002
BsiSI CCGG 8 cut(s) 68, 113, 124, 187, 288, 488, 579, 1137
BslFI GGGAC 2 cut(s) 529, 661
BslI CCNNNNNNNGG 3 cut(s) 206, 294, 929
BsmAI GTCTC 2 cut(s) 41, 171
BsmFI GGGAC 2 cut(s) 529, 661
BsmI GAATGC 2 cut(s) 538, 1033
BsnI GGCC 4 cut(s) 190, 578, 1010, 1140
BsoBI CYCGRG 2 cut(s) 174, 1002
Bsp119I TTCGAA 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 5 cut(s) 136, 499, 813, 910, 919
BspACI CCGC 5 cut(s) 264, 521, 536, 876, 988
BspANI GGCC 4 cut(s) 190, 578, 1010, 1140
BspCNI CTCAG 1 cut(s) 1078
BspEI TCCGGA 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 1118
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 2 cut(s) 905, 914
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 665
BsrFI RCCGGY 1 cut(s) 578
BsrI ACTGG 3 cut(s) 481, 986, 1141
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 288, 1135
BssMI GATC 5 cut(s) 136, 499, 813, 910, 919
Bst4CI ACNGT 4 cut(s) 566, 652, 701, 1050
Bst6I CTCTTC 7 cut(s) 57, 545, 605, 729, 737, 969, 1016
BstBI TTCGAA 1 cut(s) 665
BstDEI CTNAG 4 cut(s) 51, 363, 1065, 1095
BstF5I GGATG 5 cut(s) 472, 609, 694, 715, 1131
BstKTI GATC 5 cut(s) 139, 502, 816, 913, 922
BstMAI GTCTC 2 cut(s) 41, 171
BstMBI GATC 5 cut(s) 136, 499, 813, 910, 919
BstMWI GCNNNNNNNGC 4 cut(s) 118, 202, 385, 1007
BstSCI CCNGG 2 cut(s) 287, 1135
BstV1I GCAGC 3 cut(s) 108, 917, 1103
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuRI GGCC 4 cut(s) 190, 578, 1010, 1140
BtsCI GGATG 5 cut(s) 472, 609, 694, 715, 1131
BveI ACCTGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 578
Csp6I GTAC 2 cut(s) 171, 373
CviAII CATG 1 cut(s) 1012
CviQI GTAC 2 cut(s) 171, 373
DdeI CTNAG 4 cut(s) 51, 363, 1065, 1095
DpnI GATC 5 cut(s) 138, 501, 815, 912, 921
DpnII GATC 5 cut(s) 136, 499, 813, 910, 919
EaeI YGGCCR 2 cut(s) 576, 1138
Eam1104I CTCTTC 7 cut(s) 57, 545, 605, 729, 737, 969, 1016
EarI CTCTTC 7 cut(s) 57, 545, 605, 729, 737, 969, 1016
EciI GGCGGA 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 1040
Eco88I CYCGRG 2 cut(s) 174, 1002
FaeI CATG 1 cut(s) 1015
FaiI YATR 6 cut(s) 169, 704, 801, 803, 833, 1013
FaqI GGGAC 2 cut(s) 529, 661
FatI CATG 1 cut(s) 1011
FauI CCCGC 2 cut(s) 257, 981
Fnu4HI GCNGC 3 cut(s) 97, 906, 1092
FokI GGATG 5 cut(s) 479, 616, 701, 722, 1118
Fsp4HI GCNGC 3 cut(s) 97, 906, 1092
GluI GCNGC 3 cut(s) 97, 906, 1092
GsaI CCCAGC 2 cut(s) 681, 717
HaeIII GGCC 4 cut(s) 190, 578, 1010, 1140
HapII CCGG 8 cut(s) 68, 113, 124, 187, 288, 488, 579, 1137
Hin1II CATG 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 7 cut(s) 179, 284, 758, 820, 866, 1034, 1110
HpaII CCGG 8 cut(s) 68, 113, 124, 187, 288, 488, 579, 1137
HphI GGTGA 3 cut(s) 28, 520, 751
Hpy166II GTNNAC 2 cut(s) 358, 474
Hpy188I TCNGA 8 cut(s) 82, 201, 209, 283, 504, 1020, 1068, 1109
Hpy188III TCNNGA 4 cut(s) 488, 817, 1004, 1114
Hpy8I GTNNAC 2 cut(s) 358, 474
Hpy99I CGWCG 2 cut(s) 794, 797
HpyAV CCTTC 6 cut(s) 49, 253, 499, 553, 652, 964
HpyCH4III ACNGT 4 cut(s) 566, 652, 701, 1050
HpyCH4V TGCA 5 cut(s) 308, 463, 767, 905, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 202, 385, 1007
HpyF3I CTNAG 4 cut(s) 51, 363, 1065, 1095
Hsp92II CATG 1 cut(s) 1015
Kpn2I TCCGGA 1 cut(s) 487
Kzo9I GATC 5 cut(s) 136, 499, 813, 910, 919
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 126, 189, 1116
Lsp1109I GCAGC 3 cut(s) 108, 917, 1103
LweI GCATC 2 cut(s) 192, 700
MaeIII GTNAC 1 cut(s) 725
MalI GATC 5 cut(s) 138, 501, 815, 912, 921
MboI GATC 5 cut(s) 136, 499, 813, 910, 919
MboII GAAGA 9 cut(s) 74, 562, 619, 622, 746, 754, 784, 986, 1033
MflI RGATCY 1 cut(s) 910
MhlI GDGCHC 1 cut(s) 1003
MluCI AATT 1 cut(s) 886
MlyI GAGTC 2 cut(s) 173, 875
MmeI TCCRAC 1 cut(s) 612
MroI TCCGGA 1 cut(s) 487
MseI TTAA 3 cut(s) 234, 780, 1053
MspI CCGG 8 cut(s) 68, 113, 124, 187, 288, 488, 579, 1137
MspR9I CCNGG 2 cut(s) 289, 1137
Mva1269I GAATGC 2 cut(s) 538, 1033
MwoI GCNNNNNNNGC 4 cut(s) 118, 202, 385, 1007
NciI CCSGG 2 cut(s) 289, 1137
NdeII GATC 5 cut(s) 136, 499, 813, 910, 919
NlaIII CATG 1 cut(s) 1015
NlaIV GGNNCC 1 cut(s) 1118
NspV TTCGAA 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 1002
PciSI GCTCTTC 1 cut(s) 57
PctI GAATGC 2 cut(s) 538, 1033
PfeI GAWTC 5 cut(s) 284, 758, 820, 1034, 1110
PflFI GACNNNGTC 1 cut(s) 1103
PkrI GCNGC 3 cut(s) 98, 907, 1093
PleI GAGTC 2 cut(s) 173, 874
PpsI GAGTC 2 cut(s) 173, 874
PspFI CCCAGC 2 cut(s) 677, 713
PspN4I GGNNCC 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 910
PsyI GACNNNGTC 1 cut(s) 1103
RsaI GTAC 2 cut(s) 172, 374
RsaNI GTAC 2 cut(s) 171, 373
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 234, 780, 1053
SatI GCNGC 3 cut(s) 97, 906, 1092
Sau3AI GATC 5 cut(s) 136, 499, 813, 910, 919
SchI GAGTC 2 cut(s) 173, 875
ScrFI CCNGG 2 cut(s) 289, 1137
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 2 cut(s) 192, 700
Sfr274I CTCGAG 1 cut(s) 1002
SfuI TTCGAA 1 cut(s) 665
SlaI CTCGAG 1 cut(s) 1002
SmlI CTYRAG 3 cut(s) 158, 380, 1002
SmoI CTYRAG 3 cut(s) 158, 380, 1002
Sse9I AATT 1 cut(s) 886
SsiI CCGC 5 cut(s) 264, 521, 536, 876, 988
StyD4I CCNGG 2 cut(s) 287, 1135
TaaI ACNGT 4 cut(s) 566, 652, 701, 1050
TaqI TCGA 4 cut(s) 135, 665, 935, 1003
TasI AATT 1 cut(s) 886
TfiI GAWTC 5 cut(s) 284, 758, 820, 1034, 1110
Tru1I TTAA 3 cut(s) 234, 780, 1053
Tru9I TTAA 3 cut(s) 234, 780, 1053
TseI GCWGC 3 cut(s) 96, 905, 1091
TspDTI ATGAA 4 cut(s) 620, 710, 747, 1114
TspGWI ACGGA 1 cut(s) 912
Tth111I GACNNNGTC 1 cut(s) 1103
XhoI CTCGAG 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.