Rmu_sc0000698.1_g000044

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000698.1
OG0017267
Physical Location & Seq
Forward (+)
217250 .. 217561
312 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
atgtttggtgagatcgaccactgccttatagcccatggagcatcagcaaacttatatgaacaccctttgactcttagtgactcctcccaaacgcatgcttgccagaaatgcaaaaatgcggctaatgtgatagatggaatagttgatggcagtagaatcaggggtccatattgccgggtctgtaagtgtgttgatgacattgtcaggttgaatgttccatatggggccaagttaggggtcgtcaacgggccgggccaggcccggccaggcccattcatagcgggcttgggccgggccttgctatatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

103

Amino Acids

10.98

Weight (kDa)

8.26

Isoelectric Point (pI)

14.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_7 PF04560 2 - 78 7.5e-10 RNA polymerase Rpb2, domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 281
AcoI YGGCCR 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 255, 265
AoxI GGCC 8 cut(s) 225, 248, 253, 258, 263, 268, 289, 294
AspS9I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
AsuC2I CCSGG 4 cut(s) 176, 252, 262, 293
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 164
BccI CCATC 2 cut(s) 128, 140
BciT130I CCWGG 2 cut(s) 257, 267
BcnI CCSGG 4 cut(s) 176, 252, 262, 293
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
BmiI GGNNCC 2 cut(s) 165, 226
BmrFI CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
BmsI GCATC 1 cut(s) 50
BpuMI CCSGG 4 cut(s) 176, 252, 262, 293
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 257, 267
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 73
BshFI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BsiSI CCGG 4 cut(s) 175, 251, 262, 292
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
Bsp143I GATC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 2 cut(s) 119, 281
BspANI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BspLI GGNNCC 2 cut(s) 165, 226
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 257, 267
BstC8I GCNNGC 3 cut(s) 96, 100, 283
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 34
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 38, 108
BstNI CCWGG 2 cut(s) 257, 267
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 6 cut(s) 174, 250, 255, 260, 265, 291
BsuRI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 96, 100, 283
Cfr13I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
CviAII CATG 2 cut(s) 35, 95
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 255, 265
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 38, 98
FatI CATG 2 cut(s) 34, 94
FauI CCCGC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
HapII CCGG 4 cut(s) 175, 251, 262, 292
Hin1II CATG 2 cut(s) 38, 98
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 70, 80, 156
HpaII CCGG 4 cut(s) 175, 251, 262, 292
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 108
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 2 cut(s) 38, 98
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 38
LweI GCATC 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 64, 74
MnlI CCTC 1 cut(s) 94
MseI TTAA 1 cut(s) 310
MspI CCGG 4 cut(s) 175, 251, 262, 292
MspR9I CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
MvaI CCWGG 2 cut(s) 257, 267
MwoI GCNNNNNNNGC 2 cut(s) 38, 108
NciI CCSGG 4 cut(s) 176, 252, 262, 293
NcoI CCATGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 12
NlaIII CATG 2 cut(s) 38, 98
NlaIV GGNNCC 2 cut(s) 165, 226
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 64, 74
PpsI GAGTC 2 cut(s) 64, 74
Psp6I CCWGG 2 cut(s) 255, 265
PspGI CCWGG 2 cut(s) 255, 265
PspN4I GGNNCC 2 cut(s) 165, 226
PspPI GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
PsyI GACNNNGTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
SchI GAGTC 2 cut(s) 64, 74
ScrFI CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
SetI ASST 1 cut(s) 209
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 164
SphI GCATGC 1 cut(s) 98
SsiI CCGC 2 cut(s) 119, 281
StyD4I CCNGG 6 cut(s) 174, 250, 255, 260, 265, 291
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 1 cut(s) 15
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 72, 265
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.