Rmu_sc0000712.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000712.1
OG0020065
Physical Location & Seq
Reverse (-)
56321 .. 56728
408 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
atgtcgaatgaacatagactcgactttcccatgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatactacccataatccagacacctaacctggatcttatattggagtatatgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctctctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgttgctgaatataattcagaagctcttcttctacaaagcatgctcaagcagttatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

111

Amino Acids

12.83

Weight (kDa)

4.73

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 141
AfeI AGCGCT 2 cut(s) 186, 197
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 96, 235, 242, 271
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 175, 299
AluI AGCT 2 cut(s) 175, 299
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 186, 197
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 187, 198, 258
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 188
BfoI RGCGCY 2 cut(s) 188, 199
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 131
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 133, 156
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 2 cut(s) 186, 306
BsrDI GCAATG 1 cut(s) 211
BssMI GATC 2 cut(s) 133, 156
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 186, 306
BstC8I GCNNGC 1 cut(s) 317
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 188, 199
BstHHI GCGC 3 cut(s) 187, 198, 258
BstKTI GATC 2 cut(s) 136, 159
BstMBI GATC 2 cut(s) 133, 156
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 319
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 317
CfoI GCGC 3 cut(s) 187, 198, 258
CviAII CATG 2 cut(s) 31, 316
CviJI RGCY 3 cut(s) 48, 175, 299
CviKI_1 RGCY 3 cut(s) 48, 175, 299
DpnI GATC 2 cut(s) 135, 158
DpnII GATC 2 cut(s) 133, 156
DriI GACNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 186, 306
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 2 cut(s) 186, 306
Eco47III AGCGCT 2 cut(s) 186, 197
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 34, 319
FaiI YATR 9 cut(s) 15, 32, 113, 140, 150, 152, 178, 288, 317
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 2 cut(s) 30, 315
FspBI CTAG 1 cut(s) 188
GlaI GCGC 3 cut(s) 186, 197, 257
HaeII RGCGCY 2 cut(s) 188, 199
HhaI GCGC 3 cut(s) 187, 198, 258
Hin1II CATG 2 cut(s) 34, 319
Hin6I GCGC 3 cut(s) 185, 196, 256
HinP1I GCGC 3 cut(s) 185, 196, 256
HinfI GANTC 3 cut(s) 18, 38, 215
Hpy188I TCNGA 3 cut(s) 52, 229, 295
Hpy188III TCNNGA 3 cut(s) 118, 160, 333
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 2 cut(s) 34, 319
HspAI GCGC 3 cut(s) 185, 196, 256
Kzo9I GATC 2 cut(s) 133, 156
LguI GCTCTTC 2 cut(s) 186, 306
LpnPI CCDG 4 cut(s) 30, 116, 131, 143
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 158
MboI GATC 2 cut(s) 133, 156
MboII GAAGA 3 cut(s) 203, 293, 296
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 289
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 2 cut(s) 230, 233
MroXI GAANNNNTTC 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 133, 156
NlaIII CATG 2 cut(s) 34, 319
NspI RCATGY 1 cut(s) 319
PaeI GCATGC 1 cut(s) 319
PciSI GCTCTTC 2 cut(s) 186, 306
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 2 cut(s) 12, 32
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 2 cut(s) 186, 306
Sau3AI GATC 2 cut(s) 133, 156
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 127, 132, 177, 240, 301
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 319
Sse9I AATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 5, 21, 155
TasI AATT 1 cut(s) 289
TfiI GAWTC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.