Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000827.1

Orthogroup ID

OG0017774

Physical Location & Seq

Genomic Coordinates Forward (+)

87028 .. 92126

Gene Structure 5099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000827.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgtctatttacaggggcaaaatggttttgttcagggcaccagtaatccaattgctcaaatcagatgtgttcttaaagaagacattgaagttaagcaacgaggacatcattggctctggagggtatgggacaatttatatacttacacaggatgacaccatggcctttgctgtgaaaagattgaacagcggaagtgcagatagagatcgaagatttgagagggaaattgaagcaatgggggatataaagcaccggaacatcgtgactcttaatggatattacactgctccacattataaccttcttatatacgaactggtagcttatgaaggcttggatggagtgcttcatggttcatttgactggaactttttacattttcctccaactcctttgcaggttcaggatggatggctctatgtcaatggaactgcacagaaggaagatgttatcatagaaccccgcagctatggattagattcaactgtcttcagcgactccatcagggctgaggattgggtaggcggtgttctgctactgcactggtcatcgcctaatcctgctactgcactctctgcagtcatgctcatccagttctgctactgccctcgtactcgtgttctgctactgcactggtcatcgcctaatcctgctactgcactcgctgcactcttacttgtcgagttctgctactacactcgtcatctcctattcctactactgtactcgtccaatcctgttactgcactcatcctcgtcaagttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

6.37

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0338971
rosa_multiflora	Rmu_sc0000827.1_g000020 Rmu_sc0007364.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109310
rosa_rugosa	Rorug06G0105300 Rorug06G0105400
rosa_samantha	Rh1CG079400 Rh1CG204400 Rh1CG204700 Rh2CG559700 Rh5AG390100 Rh5AG399600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	3 cut(s)	189, 463, 525
AcuI	CTGAAG	1 cut(s)	475
AfaI	GTAC	2 cut(s)	613, 725
AgsI	TTSAA	4 cut(s)	88, 184, 230, 483
AluBI	AGCT	2 cut(s)	323, 468
AluI	AGCT	2 cut(s)	323, 468
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	465, 665
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	86, 481
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	477, 652
BccI	CCATC	4 cut(s)	332, 401, 405, 509
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	466, 666
BlsI	GCNGC	2 cut(s)	467, 667
BmiI	GGNNCC	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	86, 481
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	252
Bse1I	ACTGG	6 cut(s)	41, 321, 368, 548, 592, 638
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	6 cut(s)	157, 343, 412, 416, 588, 750
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	6 cut(s)	41, 321, 368, 548, 592, 638
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	477, 652
BsgI	GTGCAG	8 cut(s)	216, 417, 524, 552, 614, 642, 651, 729
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	3 cut(s)	189, 463, 525
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	6 cut(s)	41, 321, 368, 548, 592, 638
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	205
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	487, 723
BstAPI	GCANNNNNTGC	2 cut(s)	575, 665
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	6 cut(s)	157, 343, 412, 416, 588, 750
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 665
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	477, 652
BstV2I	GAAGAC	2 cut(s)	86, 481
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	534, 624
BtsCI	GGATG	6 cut(s)	157, 343, 412, 416, 588, 750
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	282, 541, 631
BveI	ACCTGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	612, 724
CviAII	CATG	3 cut(s)	160, 350, 583
CviJI	RGCY	7 cut(s)	114, 164, 323, 333, 415, 468, 509
CviKI_1	RGCY	7 cut(s)	114, 164, 323, 333, 415, 468, 509
CviQI	GTAC	2 cut(s)	612, 724
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	163, 353, 586
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	159, 349, 582
FauI	CCCGC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	466, 666
FokI	GGATG	6 cut(s)	164, 350, 419, 423, 575, 737
Fsp4HI	GCNGC	2 cut(s)	466, 666
GluI	GCNGC	2 cut(s)	466, 666
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	3 cut(s)	163, 353, 586
HinfI	GANTC	3 cut(s)	265, 479, 497
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	64, 767
Hpy188III	TCNNGA	3 cut(s)	117, 262, 404
HpyAV	CCTTC	3 cut(s)	311, 323, 433
HpyCH4III	ACNGT	2 cut(s)	487, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 665
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	163, 353, 586
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	2 cut(s)	477, 652
MaeIII	GTNAC	2 cut(s)	262, 739
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	4 cut(s)	91, 222, 455, 481
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	50, 132, 225
MlyI	GAGTC	2 cut(s)	259, 491
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	7 cut(s)	94, 113, 213, 393, 505, 618, 764
MseI	TTAA	3 cut(s)	74, 92, 270
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	575, 665
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	163, 353, 586
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	467, 667
PleI	GAGTC	2 cut(s)	259, 491
PpsI	GAGTC	2 cut(s)	259, 491
PsiI	TTATAA	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PstI	CTGCAG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	613, 725
RsaNI	GTAC	2 cut(s)	612, 724
SaqAI	TTAA	3 cut(s)	74, 92, 270
SatI	GCNGC	2 cut(s)	466, 666
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	259, 491
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	303, 325, 402, 470
SfcI	CTRYAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	50, 132, 225
SsiI	CCGC	3 cut(s)	189, 463, 525
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	487, 723
TaqI	TCGA	2 cut(s)	208, 681
TasI	AATT	3 cut(s)	50, 132, 225
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	3 cut(s)	74, 92, 270
Tru9I	TTAA	3 cut(s)	74, 92, 270
TscAI	CASTG	3 cut(s)	289, 548, 638
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	465, 665
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	338, 342, 345
TspRI	CASTG	3 cut(s)	289, 548, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.