Rh5AG390100

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
67464234 .. 67465967
1734 bp
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UTR
Exon/CDS
Intron
Rh5AG390100.1

Sequence Viewer

Length: 345 bp
ATGATGCTCAGGGCACCAGTAATCCAATTGCTCAAATCAGATGTGTTCTTAAAGAAGACATTGAAGTTAAGCAACGAGGACATCATTGGCTCTGGAGAGTATGGGACAATTTATATACTTACACAGGATGACACCATGGCCTTTGCTGTGAAAAGATTGAACAGAGGAAGTGCAGATAGAGATCGAAGATTTGAGAAGGAAATTGAAGCAATGGGGGATATCAAGCACCGGAACATCGTGACTCTTAATGGATATTACACTGCTCCACATTATAACCTTCTTATATACGAACTGGTAGCTTATGAAGGCTTGGATGGAGTGCTTCATGATCACTATCGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.16

Weight (kDa)

6.41

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 25 - 110 1.4e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 26 - 111 7.1e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 13
AgsI TTSAA 3 cut(s) 64, 160, 206
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AoxI GGCC 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 62
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 8
BsaBI GATNNNNATC 2 cut(s) 180, 333
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 17, 297
Bse3DI GCAATG 1 cut(s) 216
Bse8I GATNNNNATC 2 cut(s) 180, 333
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 133, 319
BseJI GATNNNNATC 2 cut(s) 180, 333
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 17, 297
BseSI GKGCMC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 192
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 181, 328
Bsp19I CCATGG 1 cut(s) 135
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 17, 297
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 181, 328
BssT1I CCWWGG 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 133, 319
BstKTI GATC 2 cut(s) 184, 331
BstMBI GATC 2 cut(s) 181, 328
BstSLI GKGCMC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 133, 319
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
CciI TCATGA 1 cut(s) 325
CviAII CATG 2 cut(s) 136, 326
CviJI RGCY 4 cut(s) 90, 140, 299, 309
CviKI_1 RGCY 4 cut(s) 90, 140, 299, 309
DdeI CTNAG 1 cut(s) 8
DpnI GATC 2 cut(s) 183, 330
DpnII GATC 2 cut(s) 181, 328
Eco130I CCWWGG 1 cut(s) 135
Eco32I GATATC 1 cut(s) 220
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 139, 329
FaiI YATR 9 cut(s) 102, 114, 116, 137, 273, 284, 286, 303, 327
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 135, 325
FbaI TGATCA 1 cut(s) 328
FokI GGATG 2 cut(s) 140, 326
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 229
Hin1II CATG 2 cut(s) 139, 329
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 93, 238, 326
HpyAV CCTTC 3 cut(s) 190, 287, 299
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 139, 329
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 181, 328
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 30, 78, 110, 242, 278
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 183, 330
MboI GATC 2 cut(s) 181, 328
MboII GAAGA 2 cut(s) 67, 198
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 26, 108, 201
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 2 cut(s) 70, 158
MseI TTAA 3 cut(s) 50, 68, 246
MspI CCGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 181, 328
NlaIII CATG 2 cut(s) 139, 329
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 238
PagI TCATGA 1 cut(s) 325
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 15
SaqAI TTAA 3 cut(s) 50, 68, 246
Sau3AI GATC 2 cut(s) 181, 328
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 16
SetI ASST 2 cut(s) 279, 301
Sse9I AATT 3 cut(s) 26, 108, 201
StyI CCWWGG 1 cut(s) 135
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 26, 108, 201
Tru1I TTAA 3 cut(s) 50, 68, 246
Tru9I TTAA 3 cut(s) 50, 68, 246
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 314, 318
TspRI CASTG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.