receptor-like serine threonine-protein kinase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0338971 |
| rosa_multiflora | Rmu_sc0000827.1_g000020 Rmu_sc0007364.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00109310 |
| rosa_rugosa | Rorug06G0105300 Rorug06G0105400 |
| rosa_samantha | Rh1CG079400 Rh1CG204400 Rh1CG204700 Rh2CG559700 Rh5AG390100 Rh5AG399600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 674, 11129 |
| AarI | CACCTGC | 1 cut(s) | 9331 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3307 |
| Acc16I | TGCGCA | 3 cut(s) | 7239, 8663, 8721 |
| Acc36I | ACCTGC | 3 cut(s) | 1703, 5173, 9331 |
| Acc65I | GGTACC | 2 cut(s) | 640, 6782 |
| AccB1I | GGYRCC | 6 cut(s) | 640, 2380, 3670, 4804, 6782, 10447 |
| AccB7I | CCANNNNNTGG | 7 cut(s) | 1105, 3225, 4167, 5900, 6209, 6235, 8249 |
| AccBSI | CCGCTC | 3 cut(s) | 38, 107, 7526 |
| AccI | GTMKAC | 6 cut(s) | 2790, 4454, 5313, 7031, 7100, 11313 |
| AccII | CGCG | 3 cut(s) | 138, 5600, 7097 |
| AccIII | TCCGGA | 1 cut(s) | 2979 |
| AclI | AACGTT | 1 cut(s) | 441 |
| AcoI | YGGCCR | 7 cut(s) | 1528, 3750, 4978, 5286, 5727, 6211, 9843 |
| AcyI | GRCGYC | 1 cut(s) | 5785 |
| AdeI | CACNNNGTG | 4 cut(s) | 3431, 4811, 10985, 11024 |
| AflII | CTTAAG | 2 cut(s) | 1687, 11294 |
| AflIII | ACRYGT | 3 cut(s) | 2041, 6366, 11328 |
| AhlI | ACTAGT | 3 cut(s) | 7184, 7483, 11306 |
| AjiI | CACGTC | 2 cut(s) | 2447, 5995 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 585, 617, 2394, 2426, 6795, 6827 |
| AleI | CACNNNNGTG | 2 cut(s) | 2955, 5504 |
| Alw44I | GTGCAC | 1 cut(s) | 7799 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 5759, 5927, 7820, 8527, 10586, 10763, 11043 |
| Ama87I | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| Aor13HI | TCCGGA | 1 cut(s) | 2979 |
| ApaI | GGGCCC | 1 cut(s) | 9250 |
| ApaLI | GTGCAC | 1 cut(s) | 7799 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2021, 2053, 10498, 10530 |
| AseI | ATTAAT | 3 cut(s) | 3489, 7344, 8106 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 8331, 9114, 9258, 9667 |
| Asp718I | GGTACC | 2 cut(s) | 640, 6782 |
| AspA2I | CCTAGG | 2 cut(s) | 2611, 4408 |
| AsuC2I | CCSGG | 2 cut(s) | 6215, 9828 |
| AsuII | TTCGAA | 1 cut(s) | 10265 |
| AsuNHI | GCTAGC | 1 cut(s) | 9158 |
| AvaI | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| AvrII | CCTAGG | 2 cut(s) | 2611, 4408 |
| BaeGI | GKGCMC | 4 cut(s) | 4807, 7803, 9250, 10452 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 10575, 10608 |
| BalI | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| BamHI | GGATCC | 2 cut(s) | 2397, 7305 |
| BanI | GGYRCC | 6 cut(s) | 640, 2380, 3670, 4804, 6782, 10447 |
| BanII | GRGCYC | 5 cut(s) | 2979, 3582, 5367, 9250, 10479 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 9577, 9609 |
| BauI | CACGAG | 5 cut(s) | 5426, 6978, 9715, 9804, 11145 |
| BbsI | GAAGAC | 9 cut(s) | 316, 1661, 2715, 4824, 7669, 9525, 9984, 10263, 10781 |
| BbvCI | CCTCAGC | 1 cut(s) | 2319 |
| BceAI | ACGGC | 6 cut(s) | 352, 436, 2420, 2612, 7722, 9858 |
| BciVI | GTATCC | 2 cut(s) | 4127, 8928 |
| BclI | TGATCA | 3 cut(s) | 7120, 9223, 10807 |
| BcnI | CCSGG | 2 cut(s) | 6215, 9828 |
| BcuI | ACTAGT | 3 cut(s) | 7184, 7483, 11306 |
| BfoI | RGCGCY | 2 cut(s) | 365, 390 |
| BfrI | CTTAAG | 2 cut(s) | 1687, 11294 |
| BfuAI | ACCTGC | 3 cut(s) | 1703, 5173, 9331 |
| BfuI | GTATCC | 2 cut(s) | 4127, 8928 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 5618, 5813, 8244, 8615 |
| BglII | AGATCT | 9 cut(s) | 4866, 5491, 6088, 6300, 7130, 8351, 9834, 10195, 10603 |
| BlnI | CCTAGG | 2 cut(s) | 2611, 4408 |
| BlpI | GCTNAGC | 3 cut(s) | 374, 5477, 7791 |
| BmeT110I | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| BmgBI | CACGTC | 2 cut(s) | 2447, 5995 |
| BmrI | ACTGGG | 2 cut(s) | 3243, 10632 |
| BmtI | GCTAGC | 1 cut(s) | 9162 |
| BmuI | ACTGGG | 2 cut(s) | 3243, 10632 |
| BoxI | GACNNNNGTC | 3 cut(s) | 5055, 5940, 7846 |
| BpiI | GAAGAC | 9 cut(s) | 316, 1661, 2715, 4824, 7669, 9525, 9984, 10263, 10781 |
| BpmI | CTGGAG | 9 cut(s) | 1382, 1403, 3434, 3725, 3939, 5736, 6327, 9401, 10995 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2319, 5241, 7434 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 374, 5477, 7791 |
| Bpu14I | TTCGAA | 1 cut(s) | 10265 |
| BpuMI | CCSGG | 2 cut(s) | 6215, 9828 |
| BsaAI | YACGTR | 2 cut(s) | 3356, 7322 |
| BsaBI | GATNNNNATC | 4 cut(s) | 940, 4391, 6535, 10723 |
| BsaHI | GRCGYC | 1 cut(s) | 5785 |
| BsaI | GGTCTC | 3 cut(s) | 5948, 9828, 10346 |
| BsaWI | WCCGGW | 2 cut(s) | 643, 2979 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 86, 116, 1349, 1379, 2961, 2991, 3928, 3958 |
| Bse8I | GATNNNNATC | 4 cut(s) | 940, 4391, 6535, 10723 |
| BseAI | TCCGGA | 1 cut(s) | 2979 |
| BseJI | GATNNNNATC | 4 cut(s) | 940, 4391, 6535, 10723 |
| BseSI | GKGCMC | 4 cut(s) | 4807, 7803, 9250, 10452 |
| BseYI | CCCAGC | 4 cut(s) | 3443, 4355, 7409, 10523 |
| BsgI | GTGCAG | 5 cut(s) | 1226, 4716, 5526, 7004, 7608 |
| Bsh1236I | CGCG | 3 cut(s) | 138, 5600, 7097 |
| BshNI | GGYRCC | 6 cut(s) | 640, 2380, 3670, 4804, 6782, 10447 |
| BsiHKCI | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| BsiSI | CCGG | 5 cut(s) | 390, 644, 2980, 6214, 9827 |
| BslFI | GGGAC | 7 cut(s) | 412, 2242, 4380, 4954, 6884, 6983, 7709 |
| BsmBI | CGTCTC | 1 cut(s) | 11206 |
| BsmFI | GGGAC | 7 cut(s) | 412, 2242, 4380, 4954, 6884, 6983, 7709 |
| BsmI | GAATGC | 8 cut(s) | 1393, 2655, 2917, 5341, 6145, 8707, 9895, 10160 |
| Bso31I | GGTCTC | 3 cut(s) | 5948, 9828, 10346 |
| BsoBI | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| Bsp119I | TTCGAA | 1 cut(s) | 10265 |
| Bsp120I | GGGCCC | 1 cut(s) | 9246 |
| Bsp13I | TCCGGA | 1 cut(s) | 2979 |
| Bsp1407I | TGTACA | 2 cut(s) | 2083, 3337 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 374, 5477, 7791 |
| Bsp19I | CCATGG | 1 cut(s) | 11348 |
| BspEI | TCCGGA | 1 cut(s) | 2979 |
| BspFNI | CGCG | 3 cut(s) | 138, 5600, 7097 |
| BspHI | TCATGA | 8 cut(s) | 2218, 3115, 4188, 5683, 6442, 6904, 7015, 9703 |
| BspMAI | CTGCAG | 6 cut(s) | 2423, 3067, 4107, 8359, 10237, 10748 |
| BspMI | ACCTGC | 3 cut(s) | 1703, 5173, 9331 |
| BspOI | GCTAGC | 1 cut(s) | 9162 |
| BspQI | GCTCTTC | 5 cut(s) | 45, 60, 4667, 8136, 9074 |
| BspT104I | TTCGAA | 1 cut(s) | 10265 |
| BspT107I | GGYRCC | 6 cut(s) | 640, 2380, 3670, 4804, 6782, 10447 |
| BspTI | CTTAAG | 2 cut(s) | 1687, 11294 |
| BspTNI | GGTCTC | 3 cut(s) | 5948, 9828, 10346 |
| BsrBI | CCGCTC | 3 cut(s) | 38, 107, 7526 |
| BsrGI | TGTACA | 2 cut(s) | 2083, 3337 |
| BssNAI | GTATAC | 1 cut(s) | 2791 |
| BssNI | GRCGYC | 1 cut(s) | 5785 |
| BssSI | CACGAG | 5 cut(s) | 5426, 6978, 9715, 9804, 11145 |
| Bst1107I | GTATAC | 1 cut(s) | 2791 |
| Bst2BI | CACGAG | 5 cut(s) | 5426, 6978, 9715, 9804, 11145 |
| BstACI | GRCGYC | 1 cut(s) | 5785 |
| BstAFI | CTTAAG | 2 cut(s) | 1687, 11294 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 263, 3500, 5549, 6121, 10508 |
| BstAUI | TGTACA | 2 cut(s) | 2083, 3337 |
| BstBAI | YACGTR | 2 cut(s) | 3356, 7322 |
| BstBI | TTCGAA | 1 cut(s) | 10265 |
| BstDSI | CCRYGG | 3 cut(s) | 402, 5192, 11348 |
| BstEII | GGTNACC | 2 cut(s) | 2344, 5203 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 194, 9254, 10265 |
| BstFNI | CGCG | 3 cut(s) | 138, 5600, 7097 |
| BstH2I | RGCGCY | 2 cut(s) | 365, 390 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 5055, 5940, 7846 |
| BstPI | GGTNACC | 2 cut(s) | 2344, 5203 |
| BstSLI | GKGCMC | 4 cut(s) | 4807, 7803, 9250, 10452 |
| BstSNI | TACGTA | 1 cut(s) | 7322 |
| BstUI | CGCG | 3 cut(s) | 138, 5600, 7097 |
| BstV2I | GAAGAC | 9 cut(s) | 316, 1661, 2715, 4824, 7669, 9525, 9984, 10263, 10781 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 409, 1139, 1406, 6589 |
| BstZ17I | GTATAC | 1 cut(s) | 2791 |
| BsuI | GTATCC | 2 cut(s) | 4127, 8928 |
| BtgI | CCRYGG | 3 cut(s) | 402, 5192, 11348 |
| BtrI | CACGTC | 2 cut(s) | 2447, 5995 |
| BtsI | GCAGTG | 5 cut(s) | 855, 2291, 3580, 3772, 4689 |
| BveI | ACCTGC | 3 cut(s) | 1703, 5173, 9331 |
| CaiI | CAGNNNCTG | 7 cut(s) | 5759, 5927, 7820, 8527, 10586, 10763, 11043 |
| CciI | TCATGA | 8 cut(s) | 2218, 3115, 4188, 5683, 6442, 6904, 7015, 9703 |
| CseI | GACGC | 5 cut(s) | 2001, 5774, 7086, 7187, 10952 |
| CsiI | ACCWGGT | 1 cut(s) | 4807 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3663, 3698 |
| DraI | TTTAAA | 5 cut(s) | 1149, 3003, 4032, 8010, 8281 |
| DraIII | CACNNNGTG | 4 cut(s) | 3431, 4811, 10985, 11024 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3307 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3307 |
| EaeI | YGGCCR | 7 cut(s) | 1528, 3750, 4978, 5286, 5727, 6211, 9843 |
| EciI | GGCGGA | 3 cut(s) | 169, 6722, 8597 |
| Ecl136II | GAGCTC | 3 cut(s) | 2977, 3580, 5365 |
| Eco105I | TACGTA | 1 cut(s) | 7322 |
| Eco147I | AGGCCT | 3 cut(s) | 9, 7250, 9508 |
| Eco24I | GRGCYC | 5 cut(s) | 2979, 3582, 5367, 9250, 10479 |
| Eco31I | GGTCTC | 3 cut(s) | 5948, 9828, 10346 |
| Eco32I | GATATC | 1 cut(s) | 9910 |
| Eco53kI | GAGCTC | 3 cut(s) | 2977, 3580, 5365 |
| Eco88I | CYCGRG | 4 cut(s) | 626, 2453, 7227, 9272 |
| Eco91I | GGTNACC | 2 cut(s) | 2344, 5203 |
| EcoICRI | GAGCTC | 3 cut(s) | 2977, 3580, 5365 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 194, 9254, 10265 |
| EcoO109I | RGGNCCY | 6 cut(s) | 4367, 4412, 6871, 9246, 9247, 10177 |
| EcoO65I | GGTNACC | 2 cut(s) | 2344, 5203 |
| EcoRI | GAATTC | 2 cut(s) | 9278, 9687 |
| EcoRV | GATATC | 1 cut(s) | 9910 |
| EcoT22I | ATGCAT | 9 cut(s) | 2164, 2209, 2800, 4131, 5782, 8162, 8389, 9020, 9408 |
| EcoT38I | GRGCYC | 5 cut(s) | 2979, 3582, 5367, 9250, 10479 |
| Esp3I | CGTCTC | 1 cut(s) | 11206 |
| FaqI | GGGAC | 7 cut(s) | 412, 2242, 4380, 4954, 6884, 6983, 7709 |
| FauI | CCCGC | 3 cut(s) | 449, 2833, 4004 |
| FauNDI | CATATG | 4 cut(s) | 259, 2800, 3856, 10114 |
| FbaI | TGATCA | 3 cut(s) | 7120, 9223, 10807 |
| FblI | GTMKAC | 6 cut(s) | 2790, 4454, 5313, 7031, 7100, 11313 |
| FriOI | GRGCYC | 5 cut(s) | 2979, 3582, 5367, 9250, 10479 |
| FspI | TGCGCA | 3 cut(s) | 7239, 8663, 8721 |
| GsaI | CCCAGC | 4 cut(s) | 3447, 4359, 7413, 10527 |
| GsuI | CTGGAG | 9 cut(s) | 1382, 1403, 3434, 3725, 3939, 5736, 6327, 9401, 10995 |
| HaeII | RGCGCY | 2 cut(s) | 365, 390 |
| HapII | CCGG | 5 cut(s) | 390, 644, 2980, 6214, 9827 |
| HgaI | GACGC | 5 cut(s) | 2001, 5774, 7086, 7187, 10952 |
| Hin1I | GRCGYC | 1 cut(s) | 5785 |
| HincII | GTYRAC | 6 cut(s) | 343, 1671, 2450, 3159, 5050, 10491 |
| HindII | GTYRAC | 6 cut(s) | 343, 1671, 2450, 3159, 5050, 10491 |
| HindIII | AAGCTT | 8 cut(s) | 7358, 8305, 8942, 8950, 9089, 9573, 9879, 9950 |
| HpaI | GTTAAC | 1 cut(s) | 1671 |
| HpaII | CCGG | 5 cut(s) | 390, 644, 2980, 6214, 9827 |
| Hpy99I | CGWCG | 6 cut(s) | 53, 95, 98, 304, 5649, 7181 |
| Hsp92I | GRCGYC | 1 cut(s) | 5785 |
| KflI | GGGWCCC | 2 cut(s) | 4367, 6871 |
| Kpn2I | TCCGGA | 1 cut(s) | 2979 |
| KpnI | GGTACC | 2 cut(s) | 644, 6786 |
| Ksp22I | TGATCA | 3 cut(s) | 7120, 9223, 10807 |
| KspAI | GTTAAC | 1 cut(s) | 1671 |
| LguI | GCTCTTC | 5 cut(s) | 45, 60, 4667, 8136, 9074 |
| MabI | ACCWGGT | 1 cut(s) | 4807 |
| MbiI | CCGCTC | 3 cut(s) | 38, 107, 7526 |
| MfeI | CAATTG | 8 cut(s) | 5213, 5864, 6918, 7806, 8195, 8418, 8829, 8850 |
| MlsI | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| MluNI | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| Mox20I | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| Mph1103I | ATGCAT | 9 cut(s) | 2164, 2209, 2800, 4131, 5782, 8162, 8389, 9020, 9408 |
| MroI | TCCGGA | 1 cut(s) | 2979 |
| MroXI | GAANNNNTTC | 4 cut(s) | 8331, 9114, 9258, 9667 |
| MscI | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| Msp20I | TGGCCA | 3 cut(s) | 1530, 4980, 5288 |
| MspA1I | CMGCKG | 6 cut(s) | 6347, 7043, 7618, 8018, 8527, 9599 |
| MspCI | CTTAAG | 2 cut(s) | 1687, 11294 |
| MspI | CCGG | 5 cut(s) | 390, 644, 2980, 6214, 9827 |
| MssI | GTTTAAAC | 1 cut(s) | 4032 |
| MunI | CAATTG | 8 cut(s) | 5213, 5864, 6918, 7806, 8195, 8418, 8829, 8850 |
| Mva1269I | GAATGC | 8 cut(s) | 1393, 2655, 2917, 5341, 6145, 8707, 9895, 10160 |
| MvnI | CGCG | 3 cut(s) | 138, 5600, 7097 |
| NciI | CCSGG | 2 cut(s) | 6215, 9828 |
| NcoI | CCATGG | 1 cut(s) | 11348 |
| NdeI | CATATG | 4 cut(s) | 259, 2800, 3856, 10114 |
| NheI | GCTAGC | 1 cut(s) | 9158 |
| NsbI | TGCGCA | 3 cut(s) | 7239, 8663, 8721 |
| NsiI | ATGCAT | 9 cut(s) | 2164, 2209, 2800, 4131, 5782, 8162, 8389, 9020, 9408 |
| NspV | TTCGAA | 1 cut(s) | 10265 |
| OliI | CACNNNNGTG | 2 cut(s) | 2955, 5504 |
| PaeI | GCATGC | 6 cut(s) | 3443, 3549, 4133, 4251, 8771, 10428 |
| PaeR7I | CTCGAG | 3 cut(s) | 2453, 7227, 9272 |
| PagI | TCATGA | 8 cut(s) | 2218, 3115, 4188, 5683, 6442, 6904, 7015, 9703 |
| PaqCI | CACCTGC | 1 cut(s) | 9331 |
| PasI | CCCWGGG | 2 cut(s) | 196, 1393 |
| PceI | AGGCCT | 3 cut(s) | 9, 7250, 9508 |
| PciI | ACATGT | 3 cut(s) | 2041, 6366, 11328 |
| PciSI | GCTCTTC | 5 cut(s) | 45, 60, 4667, 8136, 9074 |
| PctI | GAATGC | 8 cut(s) | 1393, 2655, 2917, 5341, 6145, 8707, 9895, 10160 |
| PdmI | GAANNNNTTC | 4 cut(s) | 8331, 9114, 9258, 9667 |
| PflMI | CCANNNNNTGG | 7 cut(s) | 1105, 3225, 4167, 5900, 6209, 6235, 8249 |
| PfoI | TCCNGGA | 3 cut(s) | 2565, 4484, 9826 |
| PmeI | GTTTAAAC | 1 cut(s) | 4032 |
| Ppu21I | YACGTR | 2 cut(s) | 3356, 7322 |
| PpuMI | RGGWCCY | 4 cut(s) | 4367, 4412, 6871, 10177 |
| PscI | ACATGT | 3 cut(s) | 2041, 6366, 11328 |
| PshAI | GACNNNNGTC | 3 cut(s) | 5055, 5940, 7846 |
| PshBI | ATTAAT | 3 cut(s) | 3489, 7344, 8106 |
| PsiI | TTATAA | 2 cut(s) | 674, 11129 |
| Psp124BI | GAGCTC | 3 cut(s) | 2979, 3582, 5367 |
| Psp1406I | AACGTT | 1 cut(s) | 441 |
| Psp5II | RGGWCCY | 4 cut(s) | 4367, 4412, 6871, 10177 |
| PspEI | GGTNACC | 2 cut(s) | 2344, 5203 |
| PspFI | CCCAGC | 4 cut(s) | 3443, 4355, 7409, 10523 |
| PspOMI | GGGCCC | 1 cut(s) | 9246 |
| PspPPI | RGGWCCY | 4 cut(s) | 4367, 4412, 6871, 10177 |
| PspXI | VCTCGAGB | 2 cut(s) | 2453, 9272 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1976, 2008 |
| PstI | CTGCAG | 6 cut(s) | 2423, 3067, 4107, 8359, 10237, 10748 |
| PstNI | CAGNNNCTG | 7 cut(s) | 5759, 5927, 7820, 8527, 10586, 10763, 11043 |
| PvuII | CAGCTG | 6 cut(s) | 6347, 7043, 7618, 8018, 8527, 9599 |
| SacI | GAGCTC | 3 cut(s) | 2979, 3582, 5367 |
| SapI | GCTCTTC | 5 cut(s) | 45, 60, 4667, 8136, 9074 |
| SexAI | ACCWGGT | 1 cut(s) | 4807 |
| Sfr274I | CTCGAG | 3 cut(s) | 2453, 7227, 9272 |
| SfuI | TTCGAA | 1 cut(s) | 10265 |
| SlaI | CTCGAG | 3 cut(s) | 2453, 7227, 9272 |
| SnaBI | TACGTA | 1 cut(s) | 7322 |
| SpeI | ACTAGT | 3 cut(s) | 7184, 7483, 11306 |
| SphI | GCATGC | 6 cut(s) | 3443, 3549, 4133, 4251, 8771, 10428 |
| SseBI | AGGCCT | 3 cut(s) | 9, 7250, 9508 |
| SspI | AATATT | 3 cut(s) | 4783, 4888, 10015 |
| SstI | GAGCTC | 3 cut(s) | 2979, 3582, 5367 |
| StuI | AGGCCT | 3 cut(s) | 9, 7250, 9508 |
| TaqII | GACCGA | 2 cut(s) | 2823, 7854 |
| TatI | WGTACW | 6 cut(s) | 1815, 2083, 3337, 5524, 6060, 10754 |
| TauI | GCSGC | 8 cut(s) | 38, 119, 3730, 3755, 5600, 6097, 7526, 9724 |
| TspGWI | ACGGA | 6 cut(s) | 37, 419, 5269, 7193, 10854, 10955 |
| Van91I | CCANNNNNTGG | 7 cut(s) | 1105, 3225, 4167, 5900, 6209, 6235, 8249 |
| Vha464I | CTTAAG | 2 cut(s) | 1687, 11294 |
| VneI | GTGCAC | 1 cut(s) | 7799 |
| VspI | ATTAAT | 3 cut(s) | 3489, 7344, 8106 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 194, 9254, 10265 |
| XbaI | TCTAGA | 1 cut(s) | 581 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 326, 3700, 5375, 6589, 8246 |
| XhoI | CTCGAG | 3 cut(s) | 2453, 7227, 9272 |
| XmaJI | CCTAGG | 2 cut(s) | 2611, 4408 |
| XmiI | GTMKAC | 6 cut(s) | 2790, 4454, 5313, 7031, 7100, 11313 |
| XmnI | GAANNNNTTC | 4 cut(s) | 8331, 9114, 9258, 9667 |
| Zsp2I | ATGCAT | 9 cut(s) | 2164, 2209, 2800, 4131, 5782, 8162, 8389, 9020, 9408 |