Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017774

Physical Location & Seq

Genomic Coordinates Reverse (-)

44421993 .. 44462712

Gene Structure 40720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCTATTTACAGGGGCAAAATGGTTTTGTTCAGGGCACCAGTAATCCAATTTCTCAAATCAGATGTGTTCTTAAAGAAGACATTGAAGTTAAGCAACGAGGACATCATTGGCTCTGGAGGGTATGGGACAATTTATAAACTTACACAGGATGACACCATGGCCTTTGCTGTGAAAAGATTGAACAGAGGAAGTGCAGATAGAGATCAAAGATTTGAGAGGGAAATTGAAGCAATGGGGGATATAAAGCACCGGAACATCGTGACTCTTAATGGATATTACACTGCTCCACATTATAACCTTCTTATATACGAACTGGTAGCTTATGAAGGCTTGGATGGAATGCTTCATGAGGCTTGGATGATGGGGACCAATTGGTGTAAACATGCATCAGGTTCATTTGACTGGAACTTTTTACATTTTCCTCCAACTCCTTTGCAGGTTCAGGATGGATGGCTCTATGTCAATGGAACTGCACAGAAGGAAGATTTTATCATAGAACCCCGCAGCTATGGATTAGATTCAACTGGTAGGAAACCAATGGAGGAGGAGATCTGTCGTTGCTTTATGTTGAAGAGTCATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

195

Amino Acids

22.52

Weight (kDa)

6.59

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	33 - 124	1.9e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	34 - 119	7.9e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0338971
rosa_multiflora	Rmu_sc0000827.1_g000020 Rmu_sc0007364.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109310
rosa_rugosa	Rorug06G0105300 Rorug06G0105400
rosa_samantha	Rh1CG079400 Rh1CG204400 Rh1CG204700 Rh2CG559700 Rh5AG390100 Rh5AG399600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 297
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	88, 184, 230, 525, 574
AluBI	AGCT	2 cut(s)	323, 510
AluI	AGCT	2 cut(s)	323, 510
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	369
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	4 cut(s)	332, 358, 443, 447
BfaI	CTAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	39, 370
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	252
Bse1I	ACTGG	4 cut(s)	41, 321, 410, 532
Bse3DI	GCAATG	2 cut(s)	240, 580
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	5 cut(s)	157, 343, 366, 454, 458
BseJI	GATNNNNATC	1 cut(s)	204
BseMI	GCAATG	2 cut(s)	240, 580
BseNI	ACTGG	4 cut(s)	41, 321, 410, 532
BseRI	GAGGAG	2 cut(s)	560, 563
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	519
BsgI	GTGCAG	2 cut(s)	216, 459
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	142, 382
BsmFI	GGGAC	2 cut(s)	142, 382
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	205, 552
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	39, 370
BspMI	ACCTGC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	240, 580
BsrI	ACTGG	4 cut(s)	41, 321, 410, 532
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	205, 552
BssT1I	CCWWGG	1 cut(s)	159
Bst6I	CTCTTC	1 cut(s)	569
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	5 cut(s)	157, 343, 366, 454, 458
BstKTI	GATC	2 cut(s)	208, 555
BstMBI	GATC	2 cut(s)	205, 552
BstNSI	RCATGY	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	164
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	5 cut(s)	157, 343, 366, 454, 458
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	430
CciI	TCATGA	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	369
CviAII	CATG	3 cut(s)	160, 350, 386
CviJI	RGCY	7 cut(s)	114, 164, 323, 333, 356, 457, 510
CviKI_1	RGCY	7 cut(s)	114, 164, 323, 333, 356, 457, 510
DpnI	GATC	2 cut(s)	207, 554
DpnII	GATC	2 cut(s)	205, 552
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	163, 353, 389
FaqI	GGGAC	2 cut(s)	142, 382
FatI	CATG	3 cut(s)	159, 349, 385
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	5 cut(s)	164, 350, 373, 461, 465
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	1 cut(s)	586
GluI	GCNGC	1 cut(s)	508
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	3 cut(s)	163, 353, 389
HinfI	GANTC	3 cut(s)	265, 521, 577
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	117, 262, 350, 446
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	311, 323, 475
HpyCH4V	TGCA	4 cut(s)	197, 389, 439, 476
Hsp92II	CATG	3 cut(s)	163, 353, 389
Kzo9I	GATC	2 cut(s)	205, 552
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	207, 554
MboI	GATC	2 cut(s)	205, 552
MboII	GAAGA	3 cut(s)	91, 497, 586
MfeI	CAATTG	1 cut(s)	373
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	50, 132, 225, 373
MlyI	GAGTC	2 cut(s)	259, 586
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	8 cut(s)	94, 113, 182, 213, 346, 435, 538, 541
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	3 cut(s)	74, 92, 270
MspI	CCGG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	373
Mva1269I	GAATGC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	205, 552
NlaIII	CATG	3 cut(s)	163, 353, 389
NlaIV	GGNNCC	2 cut(s)	39, 370
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	389
PagI	TCATGA	1 cut(s)	349
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	2 cut(s)	259, 585
PpsI	GAGTC	2 cut(s)	259, 585
PsiI	TTATAA	2 cut(s)	138, 297
PspN4I	GGNNCC	2 cut(s)	39, 370
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	74, 92, 270
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	2 cut(s)	205, 552
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	259, 586
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	5 cut(s)	303, 325, 397, 444, 512
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	4 cut(s)	50, 132, 225, 373
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	1 cut(s)	586
StyI	CCWWGG	1 cut(s)	159
TasI	AATT	4 cut(s)	50, 132, 225, 373
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	3 cut(s)	74, 92, 270
Tru9I	TTAA	3 cut(s)	74, 92, 270
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	338, 342, 387
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	369
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	586
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.