Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017774

Physical Location & Seq

Genomic Coordinates Forward (+)

16663939 .. 16665904

Gene Structure 1966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATCGTCGTCGTCCGTCGACCACGAATCGGAAGATTATTCTTGTTCCTCGAGGAAGCTGTGGACGAGGTCAGACAGACAAGGCGTGACGTCGTCACCGGATTGCTCATTCCCGCTGCTGACGTAGCTCTCCCGTCCGATTGCTCATTAAAGTTCTACCAGTTTGGCGGTGCTATGGATTCGGAAGACTTACCGTTGCACCGACCTCCTCGCCTCTTCACGGAGACAGAAACAGTAAAAGCCACCACCAGTTCAACGGTGCTCTGGATTCGGAAGACTTACCGTTCGACGATGCATCGAAAGACTTGCACACTCTTCCAAACTGATGATGGAATGAGGCTCAGGGCACCAGTAATCCAATTGCTCAAATCAGATGTGTTCTTAAAGAAGACATTGAAGTTAAGCAACGAGGACATCATTGGCTCTAGAGAGTATGGGACAATTTATATACTTACACAGGATGACACCATGGCCTTTGCTGTGAAAAGATTGAACAGAGGAAGTGCAGATAGAGATCGAAGATTTGAGAGGGAAATTGAAGCAATGGGGGATATAAAGCACCGGAACATCGTGACTCTTAATGGATATTACACTGCTCCACATTATAACCTTCTTATATACGAACTGGTAGCTTATGAAGGCTTGGATGGAGTGCTTCATGTGCAAATGAAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.89

Weight (kDa)

8.94

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	136 - 219	9.8e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	138 - 220	3.6e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017774)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0338971
rosa_multiflora	Rmu_sc0000827.1_g000020 Rmu_sc0007364.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109310
rosa_rugosa	Rorug06G0105300 Rorug06G0105400
rosa_samantha	Rh1CG079400 Rh1CG204400 Rh1CG204700 Rh2CG559700 Rh5AG390100 Rh5AG399600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AatII	GACGTC	1 cut(s)	93
AbsI	CCTCGAGG	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	2 cut(s)	114, 168
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	29, 220
AgsI	TTSAA	4 cut(s)	255, 397, 493, 539
AluBI	AGCT	3 cut(s)	59, 128, 632
AluI	AGCT	3 cut(s)	59, 128, 632
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	346
BbsI	GAAGAC	3 cut(s)	192, 281, 395
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	323, 641
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	2 cut(s)	282, 304
BpiI	GAAGAC	3 cut(s)	192, 281, 395
Bpu10I	CCTNAGC	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	2 cut(s)	98, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 220
Bse1I	ACTGG	4 cut(s)	160, 249, 350, 630
Bse3DI	GCAATG	1 cut(s)	549
Bse8I	GATNNNNATC	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	2 cut(s)	466, 652
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	29, 220
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	4 cut(s)	160, 249, 350, 630
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	99, 562
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	29, 220
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	264, 349
Bsp143I	GATC	2 cut(s)	3, 514
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	114, 168
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	4 cut(s)	160, 249, 350, 630
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	3, 514
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	195, 235, 259, 284
Bst6I	CTCTTC	2 cut(s)	221, 320
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	466, 652
BstKTI	GATC	2 cut(s)	6, 517
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	3, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 661
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	3 cut(s)	192, 281, 395
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	466, 652
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	591
CviAII	CATG	2 cut(s)	469, 659
CviJI	RGCY	8 cut(s)	59, 128, 242, 340, 423, 473, 632, 642
CviKI_1	RGCY	8 cut(s)	59, 128, 242, 340, 423, 473, 632, 642
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	2 cut(s)	5, 516
DpnII	GATC	2 cut(s)	3, 514
Eam1104I	CTCTTC	2 cut(s)	221, 320
EarI	CTCTTC	2 cut(s)	221, 320
Eco130I	CCWWGG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	2 cut(s)	472, 662
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	2 cut(s)	468, 658
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	473, 659
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	99, 562
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	472, 662
HincII	GTYRAC	1 cut(s)	20
HindII	GTYRAC	1 cut(s)	20
HinfI	GANTC	4 cut(s)	27, 179, 268, 574
HpaII	CCGG	2 cut(s)	99, 562
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	20, 64
Hpy188I	TCNGA	6 cut(s)	32, 74, 139, 184, 273, 373
Hpy188III	TCNNGA	3 cut(s)	265, 426, 571
Hpy8I	GTNNAC	2 cut(s)	20, 64
Hpy99I	CGWCG	5 cut(s)	11, 14, 21, 95, 292
HpyAV	CCTTC	2 cut(s)	620, 632
HpyCH4III	ACNGT	4 cut(s)	195, 235, 259, 284
HpyCH4IV	ACGT	2 cut(s)	90, 123
HpyCH4V	TGCA	5 cut(s)	199, 295, 309, 506, 664
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 661
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	90, 123
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	472, 662
Kzo9I	GATC	2 cut(s)	3, 514
LmnI	GCTCC	1 cut(s)	601
LpnPI	CCDG	9 cut(s)	112, 173, 250, 262, 328, 363, 443, 575, 611
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	282, 304
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	2 cut(s)	90, 123
MaeIII	GTNAC	3 cut(s)	86, 94, 571
MalI	GATC	2 cut(s)	5, 516
MboI	GATC	2 cut(s)	3, 514
MboII	GAAGA	7 cut(s)	45, 197, 208, 286, 307, 400, 531
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	264, 349
MluCI	AATT	3 cut(s)	359, 441, 534
MlyI	GAGTC	1 cut(s)	568
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	4 cut(s)	149, 383, 401, 579
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	99, 562
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	125, 661
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	3, 514
NlaIII	CATG	2 cut(s)	472, 662
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	3 cut(s)	86, 94, 571
NsiI	ATGCAT	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	27, 179, 268
PflFI	GACNNNGTC	2 cut(s)	68, 92
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PsiI	TTATAA	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	348
PspXI	VCTCGAGB	1 cut(s)	50
PsyI	GACNNNGTC	2 cut(s)	68, 92
SalI	GTCGAC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	149, 383, 401, 579
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	3, 514
SchI	GAGTC	1 cut(s)	568
SduI	GDGCHC	2 cut(s)	264, 349
SetI	ASST	8 cut(s)	61, 72, 93, 126, 130, 208, 612, 634
SfaNI	GCATC	2 cut(s)	282, 304
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	359, 441, 534
SsiI	CCGC	2 cut(s)	114, 168
SspMI	CTAG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	195, 235, 259, 284
TaiI	ACGT	2 cut(s)	93, 126
TaqI	TCGA	5 cut(s)	19, 51, 287, 298, 517
TasI	AATT	3 cut(s)	359, 441, 534
TfiI	GAWTC	3 cut(s)	27, 179, 268
Tru1I	TTAA	4 cut(s)	149, 383, 401, 579
Tru9I	TTAA	4 cut(s)	149, 383, 401, 579
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	3 cut(s)	86, 94, 571
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	3 cut(s)	86, 94, 571
TspDTI	ATGAA	2 cut(s)	647, 651
TspGWI	ACGGA	2 cut(s)	5, 236
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	2 cut(s)	68, 92
XbaI	TCTAGA	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	426
ZraI	GACGTC	1 cut(s)	91
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.