Rmu_sc0000905.1_g000011

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000905.1
OG0016856
Physical Location & Seq
Reverse (-)
40814 .. 41494
681 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
atgagacaaatccaagtcgccgacgacacgcttgtaatccatgagctcgaggacgtttgtgacccggccactggccgagcactcaccggctcatggatttgggcctcggctttggtcctatccaactggatgaccaaccaaagccgaacaaacttcagttttctaggcaagaccgtgcttgagcttggtgcaggagctggactccccggcttgaccgcagcccggctaggagcgagccaagttgtgctcaccgacatcaagccgctgcttccaggtttgctgaagaatgtcgaagccaacggacttggtgaacaagtcaaggtcagggaactcatgtggggatcagacgagtcattgagcgaagtcggtgagtttgacttggttttgatgtcagatgtgttctacaacgccgaggagatggttggcttggccaagacgttgaaatgtgtgtgcaacagaaagacgacagttttggcagcaactgaggtaaggccctcaactgctgagtgcctgagcgagtttgttagagaaggctttatgcttgttgagttgccgagtgagtccgcttcttcacgaggaatggacacggagagtttggattcctttgccatcttccaagtcataccaccgcatgaagaaagccaaatggatagcccttgtaatcgagaccacaggacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

226

Amino Acids

24.62

Weight (kDa)

4.59

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 29 - 166 9.4e-30 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016856)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g20871
malus_domestica MD06G1042700.v1.1
pyrus_communis pycom06g03560
rosa_chinensis RchiOBHm_Chr7g0207961
rosa_laevigata RLG00000003269
rosa_multiflora Rmu_sc0000905.1_g000011
rosa_roxburghii Rroxscaffold_3G00250980
rosa_rugosa Rorug07G0100500
rosa_samantha Rh7AG235800 Rh7BG229700 Rh7CG249300 Rh7DG240200
rosa_wichuraiana Rw0G001250 Rw0G017670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 216, 263, 564, 629
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 3 cut(s) 66, 73, 429
AcuI CTGAAG 2 cut(s) 139, 302
AfiI CCNNNNNNNGG 3 cut(s) 71, 93, 222
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 3 cut(s) 46, 184, 197
AluI AGCT 3 cut(s) 46, 184, 197
Alw21I GWGCWC 3 cut(s) 48, 82, 249
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 349
AlwNI CAGNNNCTG 2 cut(s) 197, 482
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 5 cut(s) 66, 73, 102, 429, 491
ApeKI GCWGC 3 cut(s) 218, 265, 476
ArsI GACNNNNNNTTYG 2 cut(s) 454, 486
AspS9I GGNCC 3 cut(s) 102, 115, 492
AsuC2I CCSGG 3 cut(s) 65, 207, 223
AsuHPI GGTGA 4 cut(s) 76, 241, 320, 380
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 431
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 573
Bbv12I GWGCWC 3 cut(s) 48, 82, 249
BbvI GCAGC 3 cut(s) 230, 252, 488
BccI CCATC 2 cut(s) 412, 617
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 3 cut(s) 65, 207, 223
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 2 cut(s) 164, 227
BisI GCNGC 4 cut(s) 219, 263, 266, 477
BlsI GCNGC 4 cut(s) 220, 264, 267, 478
Bme1390I CCNGG 4 cut(s) 65, 207, 223, 273
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 102, 115, 492
BmrFI CCNGG 4 cut(s) 65, 207, 223, 273
BplI GAGNNNNNCTC 2 cut(s) 186, 218
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 3 cut(s) 65, 207, 223
BsaI GGTCTC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 105, 205, 411
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 93, 222
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 76, 131
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 105, 205, 411
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 71, 93, 222
BseMII CTCAG 3 cut(s) 474, 495, 503
BseNI ACTGG 2 cut(s) 76, 131
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 3 cut(s) 230, 252, 488
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 5 cut(s) 68, 75, 104, 431, 493
BsiHKAI GWGCWC 3 cut(s) 48, 82, 249
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 4 cut(s) 65, 87, 207, 223
BslI CCNNNNNNNGG 3 cut(s) 71, 93, 222
BsmAI GTCTC 1 cut(s) 660
BsnI GGCC 5 cut(s) 68, 75, 104, 431, 493
Bso31I GGTCTC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 48, 82, 249
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 4 cut(s) 216, 263, 564, 629
BspANI GGCC 5 cut(s) 68, 75, 104, 431, 493
BspCNI CTCAG 3 cut(s) 475, 496, 504
BspPI GGATC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 76, 131
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 105, 205, 411
BssMI GATC 1 cut(s) 341
BssSI CACGAG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 175, 469
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 3 cut(s) 483, 504, 512
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 1 cut(s) 344
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 4 cut(s) 63, 205, 221, 271
BstV1I GCAGC 3 cut(s) 230, 252, 488
BsuRI GGCC 5 cut(s) 68, 75, 104, 431, 493
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 2 cut(s) 197, 482
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 102, 115, 492
CviAII CATG 5 cut(s) 41, 93, 334, 632, 678
DdeI CTNAG 3 cut(s) 483, 504, 512
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 3 cut(s) 66, 73, 429
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 139, 302
Eco88I CYCGRG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 5 cut(s) 44, 96, 337, 635, 681
FaiI YATR 7 cut(s) 42, 94, 335, 539, 623, 633, 679
FatI CATG 5 cut(s) 40, 92, 333, 631, 677
Fnu4HI GCNGC 4 cut(s) 219, 263, 266, 477
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 219, 263, 266, 477
FspBI CTAG 2 cut(s) 164, 227
GluI GCNGC 4 cut(s) 219, 263, 266, 477
HaeIII GGCC 5 cut(s) 68, 75, 104, 431, 493
HapII CCGG 4 cut(s) 65, 87, 207, 223
Hin1II CATG 5 cut(s) 44, 96, 337, 635, 681
HinfI GANTC 4 cut(s) 201, 350, 560, 599
HpaII CCGG 4 cut(s) 65, 87, 207, 223
HphI GGTGA 4 cut(s) 76, 241, 320, 380
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 346, 394
Hpy188III TCNNGA 2 cut(s) 573, 665
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 2 cut(s) 175, 469
HpyCH4IV ACGT 2 cut(s) 54, 437
HpyCH4V TGCA 2 cut(s) 191, 453
HpyF3I CTNAG 3 cut(s) 483, 504, 512
HpySE526I ACGT 2 cut(s) 54, 437
Hsp92II CATG 5 cut(s) 44, 96, 337, 635, 681
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 194, 230
Lsp1109I GCAGC 3 cut(s) 230, 252, 488
MaeI CTAG 2 cut(s) 164, 227
MaeII ACGT 2 cut(s) 54, 437
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 4 cut(s) 295, 561, 604, 647
MhlI GDGCHC 3 cut(s) 48, 82, 249
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 3 cut(s) 195, 359, 569
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 6 cut(s) 43, 115, 406, 478, 505, 569
Mox20I TGGCCA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 4 cut(s) 65, 87, 207, 223
MspR9I CCNGG 4 cut(s) 65, 207, 223, 273
MvaI CCWGG 1 cut(s) 273
NciI CCSGG 3 cut(s) 65, 207, 223
NdeII GATC 1 cut(s) 341
NlaIII CATG 5 cut(s) 44, 96, 337, 635, 681
NmeAIII GCCGAG 4 cut(s) 86, 101, 436, 579
NmuCI GTSAC 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 47
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 4 cut(s) 220, 264, 267, 478
PleI GAGTC 3 cut(s) 195, 358, 568
PpsI GAGTC 3 cut(s) 195, 358, 568
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspPI GGNCC 3 cut(s) 102, 115, 492
PspXI VCTCGAGB 1 cut(s) 47
PstNI CAGNNNCTG 2 cut(s) 197, 482
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 4 cut(s) 219, 263, 266, 477
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 3 cut(s) 102, 115, 492
SchI GAGTC 3 cut(s) 195, 359, 569
ScrFI CCNGG 4 cut(s) 65, 207, 223, 273
SduI GDGCHC 3 cut(s) 48, 82, 249
SetI ASST 8 cut(s) 48, 57, 186, 199, 277, 324, 440, 489
Sfr274I CTCGAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 47, 179
SmoI CTYRAG 2 cut(s) 47, 179
SsiI CCGC 4 cut(s) 216, 263, 564, 629
SspMI CTAG 2 cut(s) 164, 227
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 63, 205, 221, 271
TaaI ACNGT 2 cut(s) 175, 469
TaiI ACGT 2 cut(s) 57, 440
TaqI TCGA 3 cut(s) 48, 291, 664
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 218, 265, 476
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 2 cut(s) 315, 602
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 47
XspI CTAG 2 cut(s) 164, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.