Rmu_sc0001053.1_g000011

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001053.1
OG0018903
Physical Location & Seq
Forward (+)
44371 .. 45429
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
atgggtcttcttctacgcctgcaactgcttcatctgtctctcaattccttcagtgggaaatttccatctaatatatctcactgcacacaactaagagtgctcaatgttatttccaatgatcttactgggtcgatccctgatcaacttggttcattattgaagttaactcatctatggcctcagggtaaccatcttactggaaaaatcccagagtggataggaaacttttcatctttgtacagtatagctcttggcgacaacaatttacagggaaggatacccattcagctcgggcgcctaacaagcctgggaaacttcctagtttcgagcaataatctgtctggtatggtcccttcttcaatttataatatttcttccatacacattttcagtgttactgacaaccagctgcgtggagagctgctgcaaaacgttggcattactcttcctaatttggaggtatttgccggcggtgtcaacaaattcacaggaactgttccagcatcattgtcaaatgcttgtagacttcggcttcttgattttgctgaaaatggtctcactggtaaactccctgctgaaagtcttggaaggttgaaatggttaagtagagtgaactttgttgacaattcactgggaagtgggaaagctggtgaccttacttctctcagtttccttgctaattgtactaatcttgaggtgttgagttttagccgtaatcatcttggaggagaattgccagaatccatagccaacctatcaaccaaactgaggatatttacaacgggaggaaatctgatgtatggacccctccctactggcattggaaatctggtaaacttcacaaatcttggaatggaacaaaaccacattggtggtagtctccctgatgtgatcgggaagttttacaagttagagggactgtatctgaatcttaacatattttcagggccaatcccatcctccctgggaaacttgactttggtgacaaggctcttcatggagggaaataggtttgagggaagcatacctccaagtctcggaaactgccaaaatctttag

Protein Analysis

352

Amino Acids

37.89

Weight (kDa)

8.69

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 4 - 179 1.9e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018903)

Species Orthologous Gene IDs
malus_domestica MD04G1150000.v1.1 MD04G1150200.v1.1 MD05G1075900.v1.1
prunus_persica Prupe.6G248200_v2.0.a1
pyrus_communis pycom12g11010
rosa_chinensis RchiOBHm_Chr3g0463441 RchiOBHm_Chr4g0408581
rosa_multiflora Rmu_sc0001053.1_g000011
rosa_roxburghii Rroxscaffold_4G00322890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 523
AciI CCGC 1 cut(s) 471
AclI AACGTT 1 cut(s) 432
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 59, 482
AcuI CTGAAG 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 2 cut(s) 239, 685
AfiI CCNNNNNNNGG 3 cut(s) 54, 768, 1037
AgsI TTSAA 3 cut(s) 160, 360, 595
AjnI CCWGG 2 cut(s) 306, 963
AleI CACNNNNGTG 1 cut(s) 870
AluBI AGCT 5 cut(s) 248, 289, 409, 421, 647
AluI AGCT 5 cut(s) 248, 289, 409, 421, 647
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 4 cut(s) 42, 560, 884, 1040
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 176, 947
ApeKI GCWGC 3 cut(s) 409, 421, 424
ApoI RAATTY 2 cut(s) 59, 482
Asp700I GAANNNNTTC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 3 cut(s) 349, 803, 947
AsuHPI GGTGA 2 cut(s) 662, 994
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 2 cut(s) 349, 803
AxyI CCTNAGG 1 cut(s) 180
BanI GGYRCC 1 cut(s) 294
BarI GAAGNNNNNNTAC 2 cut(s) 337, 369
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 396, 408, 411
BccI CCATC 3 cut(s) 73, 198, 964
BceAI ACGGC 1 cut(s) 696
BciT130I CCWGG 2 cut(s) 308, 965
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 4 cut(s) 42, 560, 884, 1040
BfaI CTAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 298
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 3 cut(s) 410, 422, 425
BlsI GCNGC 3 cut(s) 411, 423, 426
Bme1390I CCNGG 2 cut(s) 308, 965
Bme18I GGWCC 2 cut(s) 349, 803
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 349, 803, 947
BmiI GGNNCC 3 cut(s) 296, 351, 805
BmrFI CCNGG 2 cut(s) 308, 965
BmrI ACTGGG 2 cut(s) 135, 641
BmsI GCATC 1 cut(s) 512
BmuI ACTGGG 2 cut(s) 135, 641
BpuEI CTTGAG 1 cut(s) 713
BsaHI GRCGYC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 3 cut(s) 307, 963, 964
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 768, 1037
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 5 cut(s) 130, 202, 565, 636, 820
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 308, 965
BseDI CCNNGG 3 cut(s) 307, 963, 964
BseGI GGATG 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 54, 768, 1037
BseMII CTCAG 3 cut(s) 194, 679, 758
BseNI ACTGG 5 cut(s) 130, 202, 565, 636, 820
BseRI GAGGAG 1 cut(s) 741
BseXI GCAGC 3 cut(s) 396, 408, 411
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 2 cut(s) 178, 949
BshNI GGYRCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 335, 930
BslI CCNNNNNNNGG 3 cut(s) 54, 768, 1037
BsmAI GTCTC 4 cut(s) 42, 560, 884, 1040
BsmFI GGGAC 2 cut(s) 335, 930
BsnI GGCC 2 cut(s) 178, 949
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 4 cut(s) 118, 132, 139, 891
BspACI CCGC 1 cut(s) 471
BspANI GGCC 2 cut(s) 178, 949
BspCNI CTCAG 3 cut(s) 193, 678, 759
BspLI GGNNCC 3 cut(s) 296, 351, 805
BspPI GGATC 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 998
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 5 cut(s) 130, 202, 565, 636, 820
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 307, 963, 964
BssMI GATC 4 cut(s) 118, 132, 139, 891
BssNI GRCGYC 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 308, 965
Bst4CI ACNGT 3 cut(s) 242, 496, 921
Bst6I CTCTTC 2 cut(s) 450, 998
BstACI GRCGYC 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 20, 469
BstDEI CTNAG 4 cut(s) 92, 180, 665, 767
BstEII GGTNACC 2 cut(s) 185, 650
BstF5I GGATG 1 cut(s) 956
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 4 cut(s) 121, 135, 142, 894
BstMAI GTCTC 4 cut(s) 42, 560, 884, 1040
BstMBI GATC 4 cut(s) 118, 132, 139, 891
BstMWI GCNNNNNNNGC 2 cut(s) 303, 418
BstNI CCWGG 2 cut(s) 308, 965
BstPI GGTNACC 2 cut(s) 185, 650
BstSCI CCNGG 2 cut(s) 306, 963
BstV1I GCAGC 3 cut(s) 396, 408, 411
BstXI CCANNNNNNTGG 3 cut(s) 197, 413, 872
Bsu36I CCTNAGG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 178, 949
BtsCI GGATG 1 cut(s) 956
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 5 cut(s) 58, 79, 397, 558, 629
Cac8I GCNNGC 2 cut(s) 20, 469
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 349, 803, 947
Csp6I GTAC 2 cut(s) 238, 684
CviAII CATG 1 cut(s) 997
CviQI GTAC 2 cut(s) 238, 684
DdeI CTNAG 4 cut(s) 92, 180, 665, 767
DinI GGCGCC 1 cut(s) 296
DpnI GATC 4 cut(s) 120, 134, 141, 893
DpnII GATC 4 cut(s) 118, 132, 139, 891
Eam1104I CTCTTC 2 cut(s) 450, 998
EarI CTCTTC 2 cut(s) 450, 998
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 349, 803
Eco57I CTGAAG 1 cut(s) 34
Eco81I CCTNAGG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 290
Eco91I GGTNACC 2 cut(s) 185, 650
EcoO65I GGTNACC 2 cut(s) 185, 650
EcoRII CCWGG 2 cut(s) 306, 963
EgeI GGCGCC 1 cut(s) 296
EheI GGCGCC 1 cut(s) 296
FaeI CATG 1 cut(s) 1000
FaqI GGGAC 2 cut(s) 335, 930
FatI CATG 1 cut(s) 996
FbaI TGATCA 1 cut(s) 139
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 410, 422, 425
FokI GGATG 1 cut(s) 943
Fsp4HI GCNGC 3 cut(s) 410, 422, 425
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 296
GluI GCNGC 3 cut(s) 410, 422, 425
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 2 cut(s) 178, 949
HapII CCGG 1 cut(s) 468
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 295
Hin1II CATG 1 cut(s) 1000
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 3 cut(s) 165, 478, 622
HindII GTYRAC 3 cut(s) 165, 478, 622
HinfI GANTC 2 cut(s) 740, 928
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 1 cut(s) 468
HphI GGTGA 2 cut(s) 662, 994
Hpy166II GTNNAC 7 cut(s) 165, 478, 524, 566, 613, 622, 835
Hpy188I TCNGA 3 cut(s) 795, 927, 1040
Hpy188III TCNNGA 3 cut(s) 536, 692, 895
Hpy8I GTNNAC 7 cut(s) 165, 478, 524, 566, 613, 622, 835
HpyAV CCTTC 4 cut(s) 58, 267, 363, 582
HpyCH4III ACNGT 3 cut(s) 242, 496, 921
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 3 cut(s) 22, 84, 427
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 418
HpyF3I CTNAG 4 cut(s) 92, 180, 665, 767
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 295
Hsp92II CATG 1 cut(s) 1000
HspAI GCGC 1 cut(s) 295
KasI GGCGCC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 118, 132, 139, 891
LguI GCTCTTC 1 cut(s) 998
Lsp1109I GCAGC 3 cut(s) 396, 408, 411
LweI GCATC 1 cut(s) 512
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 4 cut(s) 185, 394, 650, 982
MalI GATC 4 cut(s) 120, 134, 141, 893
MboI GATC 4 cut(s) 118, 132, 139, 891
MboII GAAGA 4 cut(s) 348, 366, 437, 985
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 9 cut(s) 43, 59, 262, 360, 451, 482, 625, 679, 731
Mly113I GGCGCC 1 cut(s) 295
MroNI GCCGGC 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 3 cut(s) 164, 602, 933
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 308, 965
MvaI CCWGG 2 cut(s) 308, 965
MwoI GCNNNNNNNGC 2 cut(s) 303, 418
NaeI GCCGGC 1 cut(s) 469
NarI GGCGCC 1 cut(s) 295
NdeII GATC 4 cut(s) 118, 132, 139, 891
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 1 cut(s) 1000
NlaIV GGNNCC 3 cut(s) 296, 351, 805
NmuCI GTSAC 2 cut(s) 650, 982
OliI CACNNNNGTG 1 cut(s) 870
PasI CCCWGGG 1 cut(s) 964
PciSI GCTCTTC 1 cut(s) 998
PdiI GCCGGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 740, 928
PkrI GCNGC 3 cut(s) 411, 423, 426
PluTI GGCGCC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 306, 963
PspEI GGTNACC 2 cut(s) 185, 650
PspGI CCWGG 2 cut(s) 306, 963
PspN4I GGNNCC 3 cut(s) 296, 351, 805
PspPI GGNCC 3 cut(s) 349, 803, 947
PstNI CAGNNNCTG 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 2 cut(s) 239, 685
RsaNI GTAC 2 cut(s) 238, 684
RseI CAYNNNNRTG 1 cut(s) 870
SapI GCTCTTC 1 cut(s) 998
SaqAI TTAA 3 cut(s) 164, 602, 933
SatI GCNGC 3 cut(s) 410, 422, 425
Sau3AI GATC 4 cut(s) 118, 132, 139, 891
Sau96I GGNCC 3 cut(s) 349, 803, 947
ScrFI CCNGG 2 cut(s) 308, 965
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 1 cut(s) 512
SfoI GGCGCC 1 cut(s) 296
SinI GGWCC 2 cut(s) 349, 803
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 9 cut(s) 43, 59, 262, 360, 451, 482, 625, 679, 731
SsiI CCGC 1 cut(s) 471
SspDI GGCGCC 1 cut(s) 294
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 306, 963
TaaI ACNGT 3 cut(s) 242, 496, 921
TaiI ACGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 131, 326
TasI AATT 9 cut(s) 43, 59, 262, 360, 451, 482, 625, 679, 731
TatI WGTACW 2 cut(s) 237, 683
TfiI GAWTC 2 cut(s) 740, 928
Tru1I TTAA 3 cut(s) 164, 602, 933
Tru9I TTAA 3 cut(s) 164, 602, 933
TscAI CASTG 5 cut(s) 58, 86, 397, 565, 636
TseFI GTSAC 2 cut(s) 650, 982
TseI GCWGC 3 cut(s) 409, 421, 424
Tsp45I GTSAC 2 cut(s) 650, 982
TspDTI ATGAA 4 cut(s) 20, 141, 219, 985
TspRI CASTG 5 cut(s) 58, 86, 397, 565, 636
VpaK11BI GGWCC 2 cut(s) 349, 803
XapI RAATTY 2 cut(s) 59, 482
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.