Rmu_sc0001230.1_g000008

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001230.1
OG0015004
Physical Location & Seq
Forward (+)
43881 .. 44516
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001230.1_g000008.1.cds

Sequence Viewer

Length: 636 bp
atgggaaactgcttgtttggaggtctgggagaggcaggtggagtagtccaagtgacgacgtccaacggcggcatcatggagttttacgcgcccattacagtgagctccatcaccgacgagtttccgagccatggtattttcagaagccatgatctcttctggaaaccgctcgctaacagcgaagaacttgtggcaggccaatcatattatttgctcccactcaacagccaaagcgatcacttgggcagtagtagtactagtactgggcagattgtgcgtcaaggccacgttagatctaacagcatacccttacctactttgctcgccggagcaccgtaccgaatgtcgcttgattaccagggaatggtgaagaggtcctacaccgaagcgttttcgaggtacaacaatgtgagcttttggaaggtgaagctggtaattagcccggaacagcttttggagatattatcgcaggagggtcggacgcaggagttgattgagagcgtgagaacggtggcaaaatgtgggagtggttcggtctcagctgccgtgggattttcggatcagtggagtctttccagtagtagtaggaatgcttcttctacttctaagaaagattttggattggtagacatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

211

Amino Acids

22.8

Weight (kDa)

6.07

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64700
fragaria_vesca FvH4_5g10680
malus_domestica MD06G1121500.v1.1 MD14G1138100.v1.1
prunus_persica Prupe.5G132000_v2.0.a1
pyrus_communis pycom14g11320
rosa_chinensis RchiOBHm_Chr7g0187471
rosa_laevigata RLG00000004778
rosa_multiflora Rmu_sc0001230.1_g000008
rosa_roxburghii Rroxscaffold_3G00267400
rosa_rugosa Rorug06G0481800
rosa_samantha Rh7AG086300 Rh7BG087900 Rh7CG087300 Rh7DG088900
rosa_wichuraiana Rw7G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
AatII GACGTC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 364
AccBSI CCGCTC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 627
AccII CGCG 1 cut(s) 89
AciI CCGC 2 cut(s) 69, 167
AclWI GGATC 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 4 cut(s) 256, 262, 338, 401
AfiI CCNNNNNNNGG 2 cut(s) 131, 364
AhlI ACTAGT 1 cut(s) 257
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 5 cut(s) 105, 414, 430, 451, 542
AluI AGCT 5 cut(s) 105, 414, 430, 451, 542
Alw21I GWGCWC 2 cut(s) 107, 334
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 1 cut(s) 567
AoxI GGCC 2 cut(s) 196, 283
ApeKI GCWGC 1 cut(s) 542
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 103, 379, 436
AvaII GGWCC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 107
BarI GAAGNNNNNNTAC 4 cut(s) 362, 394, 577, 609
Bbv12I GWGCWC 2 cut(s) 107, 334
BbvI GCAGC 1 cut(s) 529
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 82, 530
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 359
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 541
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 26
BglII AGATCT 1 cut(s) 293
BisI GCNGC 2 cut(s) 70, 543
BlsI GCNGC 2 cut(s) 71, 544
BmcAI AGTACT 2 cut(s) 256, 262
Bme1390I CCNGG 2 cut(s) 359, 443
Bme18I GGWCC 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 359, 443
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 130, 358, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 364
Bse1I ACTGG 2 cut(s) 268, 576
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 3 cut(s) 130, 358, 546
BseLI CCNNNNNNNGG 2 cut(s) 131, 364
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 268, 576
BseXI GCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 198, 285
BsiHKAI GWGCWC 2 cut(s) 107, 334
BsiSI CCGG 2 cut(s) 327, 443
BslI CCNNNNNNNGG 2 cut(s) 131, 364
BsmAI GTCTC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 2 cut(s) 198, 285
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 2 cut(s) 107, 334
Bsp143I GATC 4 cut(s) 151, 235, 293, 559
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 2 cut(s) 69, 167
BspANI GGCC 2 cut(s) 198, 285
BspCNI CTCAG 1 cut(s) 551
BspFNI CGCG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 541
BsrBI CCGCTC 1 cut(s) 169
BsrI ACTGG 2 cut(s) 268, 576
BssECI CCNNGG 3 cut(s) 130, 358, 546
BssMI GATC 4 cut(s) 151, 235, 293, 559
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 3 cut(s) 100, 336, 511
Bst6I CTCTTC 2 cut(s) 161, 365
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 171, 196, 324
BstDEI CTNAG 2 cut(s) 538, 606
BstDSI CCRYGG 2 cut(s) 130, 546
BstFNI CGCG 1 cut(s) 89
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 4 cut(s) 154, 238, 296, 562
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 4 cut(s) 151, 235, 293, 559
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 357, 441
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 529
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BsuRI GGCC 2 cut(s) 198, 285
BtgI CCRYGG 2 cut(s) 130, 546
BtsIMutI CAGTG 2 cut(s) 105, 569
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 171, 196, 324
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 375
CseI GACGC 2 cut(s) 266, 490
Csp6I GTAC 4 cut(s) 255, 261, 337, 400
CviAII CATG 3 cut(s) 76, 131, 149
CviQI GTAC 4 cut(s) 255, 261, 337, 400
DdeI CTNAG 2 cut(s) 538, 606
DpnI GATC 4 cut(s) 153, 237, 295, 561
DpnII GATC 4 cut(s) 151, 235, 293, 559
Eam1104I CTCTTC 2 cut(s) 161, 365
EarI CTCTTC 2 cut(s) 161, 365
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 375
Eco53kI GAGCTC 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 79, 134, 152
FaiI YATR 5 cut(s) 77, 132, 150, 205, 305
FatI CATG 3 cut(s) 75, 130, 148
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 70, 543
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 70, 543
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 90
GluI GCNGC 2 cut(s) 70, 543
HaeIII GGCC 2 cut(s) 198, 285
HapII CCGG 2 cut(s) 327, 443
HgaI GACGC 2 cut(s) 266, 490
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 79, 134, 152
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 568
HpaII CCGG 2 cut(s) 327, 443
HphI GGTGA 3 cut(s) 103, 379, 436
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 4 cut(s) 126, 143, 480, 559
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 628
Hpy99I CGWCG 2 cut(s) 61, 119
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 3 cut(s) 100, 336, 511
HpyCH4IV ACGT 2 cut(s) 59, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 538, 606
HpySE526I ACGT 2 cut(s) 59, 288
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 79, 134, 152
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 4 cut(s) 151, 235, 293, 559
LmnI GCTCC 3 cut(s) 110, 219, 329
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 1 cut(s) 81
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 59, 288
MaeIII GTNAC 1 cut(s) 52
MalI GATC 4 cut(s) 153, 237, 295, 561
MbiI CCGCTC 1 cut(s) 169
MboI GATC 4 cut(s) 151, 235, 293, 559
MboII GAAGA 4 cut(s) 148, 194, 382, 588
MflI RGATCY 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 107, 334
MluCI AATT 1 cut(s) 435
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 87, 458
MnlI CCTC 5 cut(s) 14, 25, 366, 390, 466
MseI TTAA 1 cut(s) 634
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 2 cut(s) 327, 443
MspR9I CCNGG 2 cut(s) 359, 443
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 130
NdeII GATC 4 cut(s) 151, 235, 293, 559
NlaIII CATG 3 cut(s) 79, 134, 152
NmuCI GTSAC 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 595
PflFI GACNNNGTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 2 cut(s) 71, 544
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspPI GGNCC 1 cut(s) 375
PspPPI RGGWCCY 1 cut(s) 375
PsuI RGATCY 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 4 cut(s) 256, 262, 338, 401
RsaNI GTAC 4 cut(s) 255, 261, 337, 400
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 2 cut(s) 70, 543
Sau3AI GATC 4 cut(s) 151, 235, 293, 559
Sau96I GGNCC 1 cut(s) 375
ScaI AGTACT 2 cut(s) 256, 262
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 2 cut(s) 359, 443
SduI GDGCHC 2 cut(s) 107, 334
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 1 cut(s) 435
SsiI CCGC 2 cut(s) 69, 167
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 357, 441
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 100, 336, 511
TaiI ACGT 2 cut(s) 62, 291
TaqI TCGA 1 cut(s) 395
TaqII GACCGA 1 cut(s) 523
TasI AATT 1 cut(s) 435
TatI WGTACW 2 cut(s) 254, 260
TauI GCSGC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TscAI CASTG 2 cut(s) 105, 569
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 2 cut(s) 105, 569
Tth111I GACNNNGTC 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 258
ZraI GACGTC 1 cut(s) 60
ZrmI AGTACT 2 cut(s) 256, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.