Rmu_sc0001246.1_g000018

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001246.1
OG0019669
Physical Location & Seq
Reverse (-)
96020 .. 97193
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001246.1_g000018.1.cds

Sequence Viewer

Length: 1041 bp
atggaggcgtcagaagaggagaagaagaagaagaagaaaaagacgaaggccgtgttcgaagtcccacacccgttggatcaagccgacatcctaatcaatatcctctcgagagtgcccacgaaaaagatcttccaattcagatggtcacgtttgctttgcattgagattgacacttacaatcccacttcgccttcagatattgtgtttagactgcccttcgatttgcccacccgtgcagcagaaatcagtggctcctgcaatggactcctttgccagttcggaaggtttactgatgagctcttttatgtgttcaatcccctaacaggagagtatgtatgtctgccacaaccccctaaaaggcttcccaatgtatttttctatggctttcggtgtgcttcagcctcaaaggtgtataagatagtgatcgctatacctcaaccgaatcacgaattggaagttttggtccataaaattgggactgatgagtggagaaatgtagctactgcatcaatgctgctccctacccttgaggaaggagatggctgctttggaacatatgagaatgggactatctactggttaggaagtaatggtgtgttgtggggtttcgatgttgagggagagaccgatagagtcttgggacttcctaccctatctgatattataaaagaaggagatgtggactgtattgtgaatcttggactacttaagcagtctctttgtctaattgttggcattaggggttctgattctagagttaatgtctttttgaagaagaattatgtggtgaatgagataaatcagttcctttggaaacacaagtttgttatgcatgctgctgagattgatgatgctacagtaccattattggttagtaagaaaaggcagatgctgatgtttcataaaggacgtttagctgcttttactcatgggaggaaaggacttacaaaaattgttcttggcaacatgaagacttcagccaatgcagcattgtgcattatccgagttttgcctcccttgctgatgatatctacggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

346

Amino Acids

38.92

Weight (kDa)

8.62

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019669)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19064
rosa_multiflora Rmu_sc0001246.1_g000018
rosa_rugosa Rorug06G0164700
rosa_samantha Rh6AG277700 Rh6BG277900 Rh6DG272500
rosa_wichuraiana Rw6G023890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
AclWI GGATC 1 cut(s) 84
AcuI CTGAAG 3 cut(s) 177, 381, 960
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 323, 357
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 2 cut(s) 313, 772
AjuI GAANNNNNNNTTGG 4 cut(s) 359, 391, 434, 466
AluBI AGCT 3 cut(s) 298, 500, 917
AluI AGCT 3 cut(s) 298, 500, 917
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 617, 720
AlwI GGATC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 892
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 6 cut(s) 236, 514, 543, 836, 917, 986
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 799
AsuII TTCGAA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 977
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 6 cut(s) 248, 501, 530, 823, 904, 998
BccI CCATC 2 cut(s) 135, 533
BceAI ACGGC 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 617, 720
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 855
BfrI CTTAAG 1 cut(s) 707
BglII AGATCT 1 cut(s) 126
BisI GCNGC 6 cut(s) 237, 515, 544, 837, 918, 987
BlsI GCNGC 6 cut(s) 238, 516, 545, 838, 919, 988
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 3 cut(s) 515, 841, 879
BpiI GAAGAC 1 cut(s) 977
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 357
Bse1I ACTGG 2 cut(s) 274, 581
Bse3DI GCAATG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 422
BseGI GGATG 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 323, 357
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 2 cut(s) 274, 581
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 6 cut(s) 248, 501, 530, 823, 904, 998
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 1 cut(s) 106
BslFI GGGAC 4 cut(s) 47, 490, 580, 654
BslI CCNNNNNNNGG 2 cut(s) 323, 357
BsmAI GTCTC 2 cut(s) 617, 720
BsmFI GGGAC 4 cut(s) 47, 490, 580, 654
BsnI GGCC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 117, 300
Bsp143I GATC 3 cut(s) 76, 126, 423
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 832
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 274, 581
BssMI GATC 3 cut(s) 76, 126, 423
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 686, 859
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 1 cut(s) 840
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 3 cut(s) 79, 129, 426
BstMAI GTCTC 2 cut(s) 617, 720
BstMBI GATC 3 cut(s) 76, 126, 423
BstMWI GCNNNNNNNGC 2 cut(s) 986, 1018
BstNSI RCATGY 1 cut(s) 836
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 6 cut(s) 248, 501, 530, 823, 904, 998
BstV2I GAAGAC 1 cut(s) 977
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 892
Cfr13I GGNCC 1 cut(s) 463
Csp6I GTAC 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 3 cut(s) 833, 929, 967
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 1 cut(s) 840
DpnI GATC 3 cut(s) 78, 128, 425
DpnII GATC 3 cut(s) 76, 126, 423
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 1029
Eco47I GGWCC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 3 cut(s) 177, 381, 960
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 298
EcoRV GATATC 1 cut(s) 1029
EcoT22I ATGCAT 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 3 cut(s) 836, 932, 970
FaqI GGGAC 4 cut(s) 47, 490, 580, 654
FatI CATG 3 cut(s) 832, 928, 966
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 6 cut(s) 237, 515, 544, 837, 918, 987
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 237, 515, 544, 837, 918, 987
FspBI CTAG 1 cut(s) 753
GluI GCNGC 6 cut(s) 237, 515, 544, 837, 918, 987
HaeIII GGCC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 836, 932, 970
HinfI GANTC 5 cut(s) 264, 442, 633, 694, 749
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 2 cut(s) 288, 682
Hpy188I TCNGA 7 cut(s) 13, 140, 196, 281, 658, 748, 1004
Hpy188III TCNNGA 4 cut(s) 106, 108, 446, 753
Hpy8I GTNNAC 2 cut(s) 288, 682
HpyAV CCTTC 6 cut(s) 40, 201, 226, 276, 527, 665
HpyCH4III ACNGT 2 cut(s) 686, 859
HpyCH4IV ACGT 2 cut(s) 148, 910
HpyCH4V TGCA 7 cut(s) 159, 236, 258, 506, 832, 986, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 986, 1018
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 2 cut(s) 148, 910
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 836, 932, 970
Kzo9I GATC 3 cut(s) 76, 126, 423
LmnI GCTCC 2 cut(s) 257, 522
LpnPI CCDG 4 cut(s) 268, 287, 309, 562
Lsp1109I GCAGC 6 cut(s) 248, 501, 530, 823, 904, 998
LweI GCATC 3 cut(s) 515, 841, 879
MaeI CTAG 1 cut(s) 753
MaeII ACGT 2 cut(s) 148, 910
MaeIII GTNAC 1 cut(s) 144
MalI GATC 3 cut(s) 78, 128, 425
MboI GATC 3 cut(s) 76, 126, 423
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 117, 300
MluCI AATT 6 cut(s) 134, 449, 471, 726, 778, 951
MlyI GAGTC 2 cut(s) 258, 642
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 8 cut(s) 10, 113, 412, 444, 523, 610, 927, 1023
Mph1103I ATGCAT 1 cut(s) 834
MseI TTAA 3 cut(s) 708, 759, 1039
MspCI CTTAAG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 986, 1018
NdeI CATATG 1 cut(s) 556
NdeII GATC 3 cut(s) 76, 126, 423
NlaIII CATG 3 cut(s) 836, 932, 970
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 834
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 1 cut(s) 57
PaeI GCATGC 1 cut(s) 836
PaeR7I CTCGAG 1 cut(s) 106
PfeI GAWTC 3 cut(s) 442, 694, 749
PkrI GCNGC 6 cut(s) 238, 516, 545, 838, 919, 988
PleI GAGTC 2 cut(s) 258, 641
PpsI GAGTC 2 cut(s) 258, 641
PsiI TTATAA 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 300
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 708, 759, 1039
SatI GCNGC 6 cut(s) 237, 515, 544, 837, 918, 987
Sau3AI GATC 3 cut(s) 76, 126, 423
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 2 cut(s) 258, 642
SduI GDGCHC 2 cut(s) 117, 300
SetI ASST 8 cut(s) 151, 287, 300, 411, 436, 502, 913, 919
SfaNI GCATC 3 cut(s) 515, 841, 879
SfcI CTRYAG 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 57
SinI GGWCC 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 3 cut(s) 106, 527, 707
SmoI CTYRAG 3 cut(s) 106, 527, 707
SphI GCATGC 1 cut(s) 836
Sse9I AATT 6 cut(s) 134, 449, 471, 726, 778, 951
SspMI CTAG 1 cut(s) 753
SstI GAGCTC 1 cut(s) 300
TaaI ACNGT 2 cut(s) 686, 859
TaiI ACGT 2 cut(s) 151, 913
TaqI TCGA 4 cut(s) 57, 107, 219, 609
TaqII GACCGA 1 cut(s) 641
TasI AATT 6 cut(s) 134, 449, 471, 726, 778, 951
TfiI GAWTC 3 cut(s) 442, 694, 749
Tru1I TTAA 3 cut(s) 708, 759, 1039
Tru9I TTAA 3 cut(s) 708, 759, 1039
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 144
TseI GCWGC 6 cut(s) 236, 514, 543, 836, 917, 986
Tsp45I GTSAC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 890, 983
TspRI CASTG 1 cut(s) 253
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 463
XbaI TCTAGA 1 cut(s) 752
XceI RCATGY 1 cut(s) 836
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 753
Zsp2I ATGCAT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.