A Receptor for Ubiquitination Targets
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g19064 |
| rosa_multiflora | Rmu_sc0001246.1_g000018 |
| rosa_rugosa | Rorug06G0164700 |
| rosa_samantha | Rh6AG277700 Rh6BG277900 Rh6DG272500 |
| rosa_wichuraiana | Rw6G023890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 524 |
| AciI | CCGC | 1 cut(s) | 793 |
| AcsI | RAATTY | 1 cut(s) | 901 |
| AcuI | CTGAAG | 3 cut(s) | 36, 240, 819 |
| AfaI | GTAC | 3 cut(s) | 272, 720, 938 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 216 |
| AflII | CTTAAG | 1 cut(s) | 566 |
| AgsI | TTSAA | 3 cut(s) | 172, 631, 901 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 218, 250, 833, 865 |
| AluBI | AGCT | 5 cut(s) | 157, 359, 776, 931, 944 |
| AluI | AGCT | 5 cut(s) | 157, 359, 776, 931, 944 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| Alw26I | GTCTC | 3 cut(s) | 476, 579, 824 |
| ApeKI | GCWGC | 6 cut(s) | 95, 373, 402, 695, 776, 845 |
| ApoI | RAATTY | 1 cut(s) | 901 |
| AspS9I | GGNCC | 1 cut(s) | 322 |
| AsuHPI | GGTGA | 1 cut(s) | 658 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| BanII | GRGCYC | 1 cut(s) | 159 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BbvI | GCAGC | 6 cut(s) | 107, 360, 389, 682, 763, 857 |
| BccI | CCATC | 1 cut(s) | 392 |
| BcoDI | GTCTC | 3 cut(s) | 476, 579, 824 |
| BfaI | CTAG | 1 cut(s) | 612 |
| BfrI | CTTAAG | 1 cut(s) | 566 |
| BisI | GCNGC | 6 cut(s) | 96, 374, 403, 696, 777, 846 |
| BlsI | GCNGC | 6 cut(s) | 97, 375, 404, 697, 778, 847 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmgT120I | GGNCC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 1 cut(s) | 112 |
| BmrI | ACTGGG | 1 cut(s) | 858 |
| BmsI | GCATC | 2 cut(s) | 374, 700 |
| BmuI | ACTGGG | 1 cut(s) | 858 |
| BpmI | CTGGAG | 1 cut(s) | 953 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BsaBI | GATNNNNATC | 1 cut(s) | 281 |
| BsaI | GGTCTC | 1 cut(s) | 476 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 216 |
| Bse1I | ACTGG | 3 cut(s) | 112, 440, 864 |
| Bse3DI | GCAATG | 1 cut(s) | 124 |
| Bse8I | GATNNNNATC | 1 cut(s) | 281 |
| BseJI | GATNNNNATC | 1 cut(s) | 281 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 216 |
| BseMI | GCAATG | 1 cut(s) | 124 |
| BseMII | CTCAG | 2 cut(s) | 690, 921 |
| BseNI | ACTGG | 3 cut(s) | 112, 440, 864 |
| BseXI | GCAGC | 6 cut(s) | 107, 360, 389, 682, 763, 857 |
| BseYI | CCCAGC | 1 cut(s) | 940 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| BslFI | GGGAC | 3 cut(s) | 349, 439, 513 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 216 |
| BsmAI | GTCTC | 3 cut(s) | 476, 579, 824 |
| BsmFI | GGGAC | 3 cut(s) | 349, 439, 513 |
| BsmI | GAATGC | 1 cut(s) | 848 |
| Bso31I | GGTCTC | 1 cut(s) | 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp1407I | TGTACA | 1 cut(s) | 270 |
| Bsp143I | GATC | 2 cut(s) | 282, 947 |
| BspACI | CCGC | 1 cut(s) | 793 |
| BspCNI | CTCAG | 2 cut(s) | 691, 920 |
| BspHI | TCATGA | 1 cut(s) | 760 |
| BspLI | GGNNCC | 1 cut(s) | 112 |
| BspTI | CTTAAG | 1 cut(s) | 566 |
| BspTNI | GGTCTC | 1 cut(s) | 476 |
| BsrDI | GCAATG | 1 cut(s) | 124 |
| BsrGI | TGTACA | 1 cut(s) | 270 |
| BsrI | ACTGG | 3 cut(s) | 112, 440, 864 |
| BssMI | GATC | 2 cut(s) | 282, 947 |
| Bst4CI | ACNGT | 2 cut(s) | 545, 718 |
| BstAFI | CTTAAG | 1 cut(s) | 566 |
| BstAUI | TGTACA | 1 cut(s) | 270 |
| BstC8I | GCNNGC | 1 cut(s) | 693 |
| BstDEI | CTNAG | 2 cut(s) | 699, 907 |
| BstKTI | GATC | 2 cut(s) | 285, 950 |
| BstMAI | GTCTC | 3 cut(s) | 476, 579, 824 |
| BstMBI | GATC | 2 cut(s) | 282, 947 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 845, 878 |
| BstNSI | RCATGY | 2 cut(s) | 198, 695 |
| BstV1I | GCAGC | 6 cut(s) | 107, 360, 389, 682, 763, 857 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 332 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 1 cut(s) | 693 |
| CciI | TCATGA | 1 cut(s) | 760 |
| Cfr13I | GGNCC | 1 cut(s) | 322 |
| Csp6I | GTAC | 3 cut(s) | 271, 719, 937 |
| CviAII | CATG | 5 cut(s) | 195, 692, 761, 788, 826 |
| CviQI | GTAC | 3 cut(s) | 271, 719, 937 |
| DdeI | CTNAG | 2 cut(s) | 699, 907 |
| DpnI | GATC | 2 cut(s) | 284, 949 |
| DpnII | GATC | 2 cut(s) | 282, 947 |
| EciI | GGCGGA | 1 cut(s) | 808 |
| Ecl136II | GAGCTC | 1 cut(s) | 157 |
| Eco24I | GRGCYC | 1 cut(s) | 159 |
| Eco31I | GGTCTC | 1 cut(s) | 476 |
| Eco32I | GATATC | 1 cut(s) | 889 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 157 |
| Eco57I | CTGAAG | 3 cut(s) | 36, 240, 819 |
| EcoICRI | GAGCTC | 1 cut(s) | 157 |
| EcoRI | GAATTC | 1 cut(s) | 901 |
| EcoRV | GATATC | 1 cut(s) | 889 |
| EcoT22I | ATGCAT | 2 cut(s) | 196, 693 |
| EcoT38I | GRGCYC | 1 cut(s) | 159 |
| FaeI | CATG | 5 cut(s) | 198, 695, 764, 791, 829 |
| FaqI | GGGAC | 3 cut(s) | 349, 439, 513 |
| FatI | CATG | 5 cut(s) | 194, 691, 760, 787, 825 |
| FauNDI | CATATG | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 6 cut(s) | 96, 374, 403, 696, 777, 846 |
| FriOI | GRGCYC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 6 cut(s) | 96, 374, 403, 696, 777, 846 |
| FspBI | CTAG | 1 cut(s) | 612 |
| GluI | GCNGC | 6 cut(s) | 96, 374, 403, 696, 777, 846 |
| GsaI | CCCAGC | 1 cut(s) | 944 |
| GsuI | CTGGAG | 1 cut(s) | 953 |
| Hin1II | CATG | 5 cut(s) | 198, 695, 764, 791, 829 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 5 cut(s) | 301, 492, 553, 608, 955 |
| HphI | GGTGA | 1 cut(s) | 658 |
| Hpy166II | GTNNAC | 4 cut(s) | 28, 147, 271, 541 |
| Hpy188I | TCNGA | 4 cut(s) | 55, 140, 517, 607 |
| Hpy188III | TCNNGA | 4 cut(s) | 305, 612, 670, 761 |
| Hpy8I | GTNNAC | 4 cut(s) | 28, 147, 271, 541 |
| HpyAV | CCTTC | 6 cut(s) | 60, 85, 135, 386, 524, 758 |
| HpyCH4III | ACNGT | 2 cut(s) | 545, 718 |
| HpyCH4V | TGCA | 9 cut(s) | 18, 95, 117, 194, 313, 365, 691, 845, 856 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 845, 878 |
| HpyF3I | CTNAG | 2 cut(s) | 699, 907 |
| Hsp92II | CATG | 5 cut(s) | 198, 695, 764, 791, 829 |
| Kzo9I | GATC | 2 cut(s) | 282, 947 |
| LmnI | GCTCC | 2 cut(s) | 116, 381 |
| Lsp1109I | GCAGC | 6 cut(s) | 107, 360, 389, 682, 763, 857 |
| LweI | GCATC | 2 cut(s) | 374, 700 |
| MaeI | CTAG | 1 cut(s) | 612 |
| MalI | GATC | 2 cut(s) | 284, 949 |
| MboI | GATC | 2 cut(s) | 282, 947 |
| MboII | GAAGA | 2 cut(s) | 643, 646 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 7 cut(s) | 308, 330, 585, 637, 810, 901, 918 |
| MlyI | GAGTC | 1 cut(s) | 501 |
| MnlI | CCTC | 8 cut(s) | 16, 271, 303, 382, 469, 677, 883, 916 |
| Mph1103I | ATGCAT | 2 cut(s) | 196, 693 |
| MseI | TTAA | 2 cut(s) | 567, 618 |
| MspCI | CTTAAG | 1 cut(s) | 566 |
| MunI | CAATTG | 1 cut(s) | 330 |
| Mva1269I | GAATGC | 1 cut(s) | 848 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 845, 878 |
| NdeI | CATATG | 1 cut(s) | 415 |
| NdeII | GATC | 2 cut(s) | 282, 947 |
| NlaIII | CATG | 5 cut(s) | 198, 695, 764, 791, 829 |
| NlaIV | GGNNCC | 1 cut(s) | 112 |
| NsiI | ATGCAT | 2 cut(s) | 196, 693 |
| NspI | RCATGY | 2 cut(s) | 198, 695 |
| PaeI | GCATGC | 1 cut(s) | 695 |
| PagI | TCATGA | 1 cut(s) | 760 |
| PctI | GAATGC | 1 cut(s) | 848 |
| PfeI | GAWTC | 4 cut(s) | 301, 553, 608, 955 |
| PkrI | GCNGC | 6 cut(s) | 97, 375, 404, 697, 778, 847 |
| PleI | GAGTC | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 500 |
| PsiI | TTATAA | 1 cut(s) | 524 |
| Psp124BI | GAGCTC | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 940 |
| PspN4I | GGNNCC | 1 cut(s) | 112 |
| PspPI | GGNCC | 1 cut(s) | 322 |
| RsaI | GTAC | 3 cut(s) | 272, 720, 938 |
| RsaNI | GTAC | 3 cut(s) | 271, 719, 937 |
| SacI | GAGCTC | 1 cut(s) | 159 |
| SaqAI | TTAA | 2 cut(s) | 567, 618 |
| SatI | GCNGC | 6 cut(s) | 96, 374, 403, 696, 777, 846 |
| Sau3AI | GATC | 2 cut(s) | 282, 947 |
| Sau96I | GGNCC | 1 cut(s) | 322 |
| SchI | GAGTC | 1 cut(s) | 501 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SfaNI | GCATC | 2 cut(s) | 374, 700 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SmlI | CTYRAG | 2 cut(s) | 386, 566 |
| SmoI | CTYRAG | 2 cut(s) | 386, 566 |
| SphI | GCATGC | 1 cut(s) | 695 |
| Sse9I | AATT | 7 cut(s) | 308, 330, 585, 637, 810, 901, 918 |
| SsiI | CCGC | 1 cut(s) | 793 |
| SspMI | CTAG | 1 cut(s) | 612 |
| SstI | GAGCTC | 1 cut(s) | 159 |
| TaaI | ACNGT | 2 cut(s) | 545, 718 |
| TaqI | TCGA | 4 cut(s) | 78, 468, 474, 946 |
| TaqII | GACCGA | 1 cut(s) | 500 |
| TasI | AATT | 7 cut(s) | 308, 330, 585, 637, 810, 901, 918 |
| TatI | WGTACW | 1 cut(s) | 270 |
| TfiI | GAWTC | 4 cut(s) | 301, 553, 608, 955 |
| Tru1I | TTAA | 2 cut(s) | 567, 618 |
| Tru9I | TTAA | 2 cut(s) | 567, 618 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseI | GCWGC | 6 cut(s) | 95, 373, 402, 695, 776, 845 |
| TspDTI | ATGAA | 2 cut(s) | 749, 777 |
| TspGWI | ACGGA | 1 cut(s) | 909 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Vha464I | CTTAAG | 1 cut(s) | 566 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |
| XapI | RAATTY | 1 cut(s) | 901 |
| XbaI | TCTAGA | 1 cut(s) | 611 |
| XceI | RCATGY | 2 cut(s) | 198, 695 |
| XspI | CTAG | 1 cut(s) | 612 |
| Zsp2I | ATGCAT | 2 cut(s) | 196, 693 |