Rh6AG277700

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019669
Physical Location & Seq
Reverse (-)
47197478 .. 47198335
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG277700.1

Sequence Viewer

Length: 729 bp
ATGGTGGCGTCAGAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGGCCGTGTTCGAAGTCCCACACCCGTTGGAGCAAGCCGACATCCTAATCAATATCCTCTCGAGAGTGCCCACGAAAAAGATCTTCCAATTCAGATGGTCACGTTTGCTTTGCATTGAGATTGACACTTACAATCCCACTTCGCCTTCAGATATTGTGTTTAGACTGCCCTTCGATTTGCCCACCCGTGCAGCAGAAATCAGTGGCTCCTGCAATGGACTCCTTTGCCAGTTCGGAAGGTTTACTGATGAGCTCTTTTATGTGTTCAATCCCCTAACAGGAGAGTATGTATGTCTGCCACAACCCCCTAAAAGGCTTCCCAATGTATTTTTCTATGGCTTTGGGTGTGCTTCAGCCTCAAAGGTGTATAAGATAGTGATCGCTATACCTCAACCGAATCACGAATTGGAAGTTTTGGTCCATAAAATTGGGACTGATGAGTGGAGAAATGTAGGTACTGCATCATTGCTGCTCCCTACCCTTGAGGAAGGAGATGGCTGCTTTGGAACATATGAGAATGGGACTATCTACTGGTTAGGAAGTAATGGTGTGTTGTGGGGTTTCGATGTTGAGGGAGAGACCGATAGAGTCTTGGGACTTCCTACCCTATCTGATATTATAAAAGAAGGAGATGTGGACTGTATTGTGAATCTTGGACTACTTAAGAATCTATTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

5.52

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 70 - 211 2.9e-06 KIB1-4 beta-propeller
FBA_3 PF08268 75 - 210 8.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019669)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19064
rosa_multiflora Rmu_sc0001246.1_g000018
rosa_rugosa Rorug06G0164700
rosa_samantha Rh6AG277700 Rh6BG277900 Rh6DG272500
rosa_wichuraiana Rw6G023890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AcuI CTGAAG 2 cut(s) 180, 384
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 2 cut(s) 326, 360
AflII CTTAAG 1 cut(s) 710
AgsI TTSAA 1 cut(s) 316
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 437, 469
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 239, 517, 546
AspS9I GGNCC 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 60
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 466
BaeGI GKGCMC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 251, 504, 533
BccI CCATC 2 cut(s) 138, 536
BceAI ACGGC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 620
BfrI CTTAAG 1 cut(s) 710
BglII AGATCT 1 cut(s) 129
BisI GCNGC 3 cut(s) 240, 518, 547
BlsI GCNGC 3 cut(s) 241, 519, 548
Bme18I GGWCC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 620
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 360
Bse1I ACTGG 2 cut(s) 277, 584
Bse3DI GCAATG 2 cut(s) 268, 512
Bse8I GATNNNNATC 1 cut(s) 425
BseGI GGATG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 326, 360
BseMI GCAATG 2 cut(s) 268, 512
BseNI ACTGG 2 cut(s) 277, 584
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 3 cut(s) 251, 504, 533
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 109
BslFI GGGAC 4 cut(s) 50, 493, 583, 657
BslI CCNNNNNNNGG 2 cut(s) 326, 360
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 4 cut(s) 50, 493, 583, 657
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 620
BsoBI CYCGRG 1 cut(s) 109
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 120, 303
Bsp143I GATC 2 cut(s) 129, 426
BspANI GGCC 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 268, 512
BsrI ACTGG 2 cut(s) 277, 584
BssMI GATC 2 cut(s) 129, 426
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 2 cut(s) 132, 429
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 2 cut(s) 129, 426
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 251, 504, 533
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 504
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviJI RGCY 8 cut(s) 53, 86, 255, 301, 364, 387, 404, 546
CviKI_1 RGCY 8 cut(s) 53, 86, 255, 301, 364, 387, 404, 546
CviQI GTAC 1 cut(s) 504
DpnI GATC 2 cut(s) 131, 428
DpnII GATC 2 cut(s) 129, 426
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 466
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 180, 384
Eco88I CYCGRG 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 303
FaqI GGGAC 4 cut(s) 50, 493, 583, 657
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 240, 518, 547
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 240, 518, 547
GluI GCNGC 3 cut(s) 240, 518, 547
HaeIII GGCC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 8
HinfI GANTC 5 cut(s) 267, 445, 636, 697, 715
Hpy166II GTNNAC 2 cut(s) 291, 685
Hpy188I TCNGA 5 cut(s) 13, 143, 199, 284, 661
Hpy188III TCNNGA 3 cut(s) 109, 111, 449
Hpy8I GTNNAC 2 cut(s) 291, 685
HpyAV CCTTC 6 cut(s) 43, 204, 229, 279, 530, 668
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 162, 239, 261, 509
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 129, 426
LmnI GCTCC 3 cut(s) 79, 260, 525
LpnPI CCDG 4 cut(s) 271, 290, 312, 565
Lsp1109I GCAGC 3 cut(s) 251, 504, 533
LweI GCATC 1 cut(s) 518
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 147
MalI GATC 2 cut(s) 131, 428
MboI GATC 2 cut(s) 129, 426
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 120, 303
MluCI AATT 3 cut(s) 137, 452, 474
MlyI GAGTC 2 cut(s) 261, 645
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 10, 116, 415, 447, 526, 613
MseI TTAA 1 cut(s) 711
MspCI CTTAAG 1 cut(s) 710
NdeI CATATG 1 cut(s) 559
NdeII GATC 2 cut(s) 129, 426
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 147
NspV TTCGAA 1 cut(s) 60
PaeR7I CTCGAG 1 cut(s) 109
PfeI GAWTC 3 cut(s) 445, 697, 715
PkrI GCNGC 3 cut(s) 241, 519, 548
PleI GAGTC 2 cut(s) 261, 644
PpsI GAGTC 2 cut(s) 261, 644
PsiI TTATAA 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 466
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 3 cut(s) 240, 518, 547
Sau3AI GATC 2 cut(s) 129, 426
Sau96I GGNCC 1 cut(s) 466
SchI GAGTC 2 cut(s) 261, 645
SduI GDGCHC 2 cut(s) 120, 303
SetI ASST 6 cut(s) 154, 290, 303, 414, 439, 505
SfaNI GCATC 1 cut(s) 518
Sfr274I CTCGAG 1 cut(s) 109
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 466
SlaI CTCGAG 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 109, 530, 710
SmoI CTYRAG 3 cut(s) 109, 530, 710
Sse9I AATT 3 cut(s) 137, 452, 474
SstI GAGCTC 1 cut(s) 303
TaaI ACNGT 1 cut(s) 689
TaiI ACGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 60, 110, 222, 612
TaqII GACCGA 1 cut(s) 644
TasI AATT 3 cut(s) 137, 452, 474
TfiI GAWTC 3 cut(s) 445, 697, 715
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 3 cut(s) 239, 517, 546
Tsp45I GTSAC 1 cut(s) 147
TspRI CASTG 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.