Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0019669

Physical Location & Seq

Genomic Coordinates Reverse (-)

46596470 .. 46600639

Gene Structure 4170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGCGTCAGAAGAGGAGAAGAAGAAGAAGACGAAGGCCGTGTTCGAAGTCCCACACCCGTTGGAGCAAGCCGACATCCTAATCAATATCCTCTCGAGAGTGCCCACGAAAAAGATCTTCCAATTCAGACTGCCCTTCGATTTGTCCACCCGTGCAGCAGAAATCAGTGGCTCCTGCGATGGACTCCTTTGCCAGTTCGGAAGGTTTACCGATGAGCTCTTTTATGTGTTCAATCCCCTAACAGGAGAGTATGTATGTCTGCCACAACCCCCTAAAAGGCTTCCCAATGTATTTTTCTATGGCTTTGGGTGTGCTTCAGCCTCAAAGGTGTATAAGATAGTGATCGCTATACCTCTACCGAATCACGAATTGGAAGTTTTGGTCCATAAAATTGGGACTGATGAGTGGAGAAATGTAGCTACTGCATCAATGCTGCTCCCTACCCTTGAGGAAGGAGATGGCTGCTTTGGAACATATGAGAATGGGACTATCTACTGGTTAGGAAGTAATGGTGTGTTGTGGGGTTTCGATGTTGAGGGAGAGACCGATAGAGTCTTGGGACTTCCTACCCTATCTGATATTATAAAAGAAGGAGATGTGGACTGTATTGTGAATCTTGGACTACTTAAGCAGTCTCTTTGTCTAATTGTTGGCATTAGGGGTTCTGATTCTAGAGTTAATGTCTTTTTGAAGAAGAATTATGTGGTGAATGAGATAAATCAGTTCCTTTGGAAACACAAGTTTGTTATGCATGCTGCTGAGATTGATGATGCTACAATAAGGATCAGCAGGGACACCATAGAGGGTGGTGAAAGATTCAATGAAGGAGAGAAACCATCACATCAGGGGATCATGCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

288

Amino Acids

32.33

Weight (kDa)

5.38

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	35 - 187	1.1e-07	KIB1-4 beta-propeller
FBA_3	PF08268	44 - 183	3.4e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g19064
rosa_multiflora	Rmu_sc0001246.1_g000018
rosa_rugosa	Rorug06G0164700
rosa_samantha	Rh6AG277700 Rh6BG277900 Rh6DG272500
rosa_wichuraiana	Rw6G023890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AclWI	GGATC	2 cut(s)	794, 860
AcuI	CTGAAG	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	245, 279
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	235, 694, 823
AjuI	GAANNNNNNNTTGG	4 cut(s)	281, 313, 356, 388
AluBI	AGCT	2 cut(s)	220, 422
AluI	AGCT	2 cut(s)	220, 422
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	539, 642
AlwI	GGATC	2 cut(s)	794, 860
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	4 cut(s)	158, 436, 465, 758
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	721, 824
AsuII	TTCGAA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	4 cut(s)	170, 423, 452, 745
BccI	CCATC	3 cut(s)	176, 455, 847
BceAI	ACGGC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	539, 642
BfaI	CTAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	629
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	4 cut(s)	159, 437, 466, 759
BlsI	GCNGC	4 cut(s)	160, 438, 467, 760
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	2 cut(s)	437, 763
BpiI	GAAGAC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	539
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 279
Bse1I	ACTGG	2 cut(s)	196, 503
Bse8I	GATNNNNATC	1 cut(s)	344
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	245, 279
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	2 cut(s)	196, 503
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	4 cut(s)	170, 423, 452, 745
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	97
BslFI	GGGAC	5 cut(s)	38, 412, 502, 576, 809
BslI	CCNNNNNNNGG	2 cut(s)	245, 279
BsmAI	GTCTC	2 cut(s)	539, 642
BsmFI	GGGAC	5 cut(s)	38, 412, 502, 576, 809
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	108, 222
Bsp143I	GATC	4 cut(s)	117, 345, 786, 852
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	794, 860
BspT104I	TTCGAA	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	196, 503
BssMI	GATC	4 cut(s)	117, 345, 786, 852
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	629
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	72, 756
BstDEI	CTNAG	1 cut(s)	762
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	120, 348, 789, 855
BstMAI	GTCTC	2 cut(s)	539, 642
BstMBI	GATC	4 cut(s)	117, 345, 786, 852
BstNSI	RCATGY	1 cut(s)	758
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	170, 423, 452, 745
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	72, 756
Cfr13I	GGNCC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	2 cut(s)	755, 856
CviJI	RGCY	9 cut(s)	41, 74, 174, 220, 283, 306, 323, 422, 465
CviKI_1	RGCY	9 cut(s)	41, 74, 174, 220, 283, 306, 323, 422, 465
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	4 cut(s)	119, 347, 788, 854
DpnII	GATC	4 cut(s)	117, 345, 786, 852
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	758, 859
FaqI	GGGAC	5 cut(s)	38, 412, 502, 576, 809
FatI	CATG	2 cut(s)	754, 855
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	4 cut(s)	159, 437, 466, 759
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	159, 437, 466, 759
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	4 cut(s)	159, 437, 466, 759
HaeIII	GGCC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	758, 859
HinfI	GANTC	6 cut(s)	186, 364, 555, 616, 671, 819
HphI	GGTGA	2 cut(s)	721, 824
Hpy166II	GTNNAC	3 cut(s)	150, 210, 604
Hpy188I	TCNGA	5 cut(s)	13, 131, 203, 580, 670
Hpy188III	TCNNGA	4 cut(s)	97, 99, 368, 675
Hpy8I	GTNNAC	3 cut(s)	150, 210, 604
HpyAV	CCTTC	6 cut(s)	31, 148, 198, 449, 587, 821
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	158, 428, 754, 859
HpyF3I	CTNAG	1 cut(s)	762
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	758, 859
Kzo9I	GATC	4 cut(s)	117, 345, 786, 852
LmnI	GCTCC	3 cut(s)	67, 179, 444
LpnPI	CCDG	6 cut(s)	190, 209, 231, 484, 778, 833
Lsp1109I	GCAGC	4 cut(s)	170, 423, 452, 745
LweI	GCATC	2 cut(s)	437, 763
MaeI	CTAG	1 cut(s)	675
MalI	GATC	4 cut(s)	119, 347, 788, 854
MboI	GATC	4 cut(s)	117, 345, 786, 852
MboII	GAAGA	8 cut(s)	26, 34, 37, 40, 43, 112, 706, 709
MflI	RGATCY	1 cut(s)	117
MhlI	GDGCHC	2 cut(s)	108, 222
MluCI	AATT	5 cut(s)	125, 371, 393, 648, 700
MlyI	GAGTC	2 cut(s)	180, 564
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	10, 104, 334, 366, 445, 532, 799
Mph1103I	ATGCAT	1 cut(s)	756
MseI	TTAA	2 cut(s)	630, 681
MspCI	CTTAAG	1 cut(s)	629
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	4 cut(s)	117, 345, 786, 852
NlaIII	CATG	2 cut(s)	758, 859
NlaIV	GGNNCC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	756
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	758
PaeR7I	CTCGAG	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	364, 616, 671, 819
PkrI	GCNGC	4 cut(s)	160, 438, 467, 760
PleI	GAGTC	2 cut(s)	180, 563
PpsI	GAGTC	2 cut(s)	180, 563
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	630, 681
SatI	GCNGC	4 cut(s)	159, 437, 466, 759
Sau3AI	GATC	4 cut(s)	117, 345, 786, 852
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	2 cut(s)	180, 564
SduI	GDGCHC	2 cut(s)	108, 222
SetI	ASST	5 cut(s)	209, 222, 333, 358, 424
SfaNI	GCATC	2 cut(s)	437, 763
Sfr274I	CTCGAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	3 cut(s)	97, 449, 629
SmoI	CTYRAG	3 cut(s)	97, 449, 629
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	5 cut(s)	125, 371, 393, 648, 700
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	608
TaqI	TCGA	4 cut(s)	48, 98, 141, 531
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	5 cut(s)	125, 371, 393, 648, 700
TfiI	GAWTC	4 cut(s)	364, 616, 671, 819
Tru1I	TTAA	2 cut(s)	630, 681
Tru9I	TTAA	2 cut(s)	630, 681
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	4 cut(s)	158, 436, 465, 758
TspDTI	ATGAA	1 cut(s)	840
TspRI	CASTG	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	385
XbaI	TCTAGA	1 cut(s)	674
XceI	RCATGY	1 cut(s)	758
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	1 cut(s)	675
Zsp2I	ATGCAT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.