Rmu_sc0001356.1_g000026

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001356.1
OG0004964
Physical Location & Seq
Forward (+)
111048 .. 113711
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1811 bp
atggtaaggccatgggttcttctcctacctcatcaccaagattacatggtgaaaacttctatgaggagcatgaacaattttgcgggatcagggaataagagtgataaacagacaaagaagtcatctcaggtatgtcaggcagcgtgggaaagccaccatttgtactctcctaccattgctgatcagaaagttgatgaatatcctgctccagcaactcggatagtggtgttgaggcctagccctgggaagactcaggatggtaaggccatgggttcttctcctacctcatcaccaagattacatggtgaaaacttctatgaggagcatgaagatgatggggtgcgagaatcaatagaagttgcagaggagatcacacagacaatgcgtgataattcgatgggccaccggagggttgaaactttgctttcctctgtcttttccaatggttatacgggagatgagagttcgtttcacaaatcagaaaatgaatatgcagctggaaatctcagtgactcagaagtcatgtcaccatctcctaggcatacatgggatcacattaatgggtttggcagccctttttcttcttcttccttcagtcgcatgtcatgttctccagagtcatctgtatgcagagaagccaagaagcgactttctgaaagatgggccatgatggcattaaatggaaattctcaggagcaaagacatgcccgaaggagctctagtacattaggtgagatgcttgctctatcagaggttaagaagtcaacaacatctgaggatgagattagtcacaaggaacaagaacgaagggaatcagtttcatgcttgattagtgattcaagtaaggaagagctggttgattctcctagtcttttgaggtcgaaatctctccctgtatcttctgcggtatttagcaaccagatcaacattgaagtttcacatcatgaggcggggaagatagatgttcccaaagagctgagtaaggcaaagagcatgaagtcatcattgaaagggaaagtctcaagtttatttttctctagatataagaaatcaaataaagagaaatctgaggcatttcgagcaaacaaggaatctcaatcttccttttctgaacaattaagttctctggttcgtccgggaatgattagtgatgatgcatctcagtgttccaatgatggtggatttgaagggtgtttctctcctgctttatgtggtgcttcaggaaaagactctccggttgtaacaaacattgaacaaaaacaaggggcagctccatgggaggcagggttgtctttggcaaagcctgtggtgcctggaaatgttggtgagaatcaggaccagccaagtccaatatcagttctagaaccaccatttgtagaggatgacaatactattcaggaattttctaggtttttgaagccagaccacctaggaagacatctcaagtctaacttgattgacaaatcaccaccaataggatcaattgctcggaccctgtcatgggatgaatcttgtgcagagactgccacaccatatggtctattaaaatcgccttcagtttccacaagcattgaggaagaagaacaagactggcaagccattgtccaaactcttttatcagcagccggcctcgatggtgagctgcagtgtgattcgtttttcggtaaatggcattcacttgaaagtcctttggacccatctctccgagataagtacgccaacccggatgacaaagagcttttgcacgaggcaaagagaaggaaatggcgatcaagtcggaagctcgtattcgattgtgttaatgcagccct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378 VARLMGL

Protein Analysis

604

Amino Acids

66.72

Weight (kDa)

5.84

Isoelectric Point (pI)

68.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 535 - 604 2.5e-12 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 118, 518
AccB1I GGYRCC 1 cut(s) 1309
AciI CCGC 3 cut(s) 83, 905, 950
AclWI GGATC 3 cut(s) 94, 558, 1486
AcsI RAATTY 2 cut(s) 685, 1400
AcuI CTGAAG 3 cut(s) 577, 1203, 1539
AfaI GTAC 3 cut(s) 164, 724, 1715
AfiI CCNNNNNNNGG 5 cut(s) 242, 409, 1475, 1500, 1501
AgsI TTSAA 8 cut(s) 416, 840, 932, 1009, 1187, 1253, 1417, 1682
AjnI CCWGG 2 cut(s) 241, 1312
AluBI AGCT 8 cut(s) 497, 717, 853, 976, 1271, 1642, 1738, 1783
AluI AGCT 8 cut(s) 497, 717, 853, 976, 1271, 1642, 1738, 1783
Alw21I GWGCWC 1 cut(s) 719
Alw26I GTCTC 2 cut(s) 1024, 1514
AlwI GGATC 3 cut(s) 94, 558, 1486
AlwNI CAGNNNCTG 1 cut(s) 1523
AoxI GGCC 6 cut(s) 8, 233, 264, 400, 663, 1627
ApeKI GCWGC 7 cut(s) 140, 494, 570, 1268, 1622, 1642, 1805
ApoI RAATTY 2 cut(s) 685, 1400
AseI ATTAAT 1 cut(s) 558
AspA2I CCTAGG 2 cut(s) 536, 1429
AspS9I GGNCC 5 cut(s) 400, 663, 1336, 1491, 1693
AsuC2I CCSGG 2 cut(s) 1137, 1724
AsuHPI GGTGA 9 cut(s) 26, 61, 282, 317, 519, 743, 1337, 1458, 1649
AvaII GGWCC 3 cut(s) 1336, 1491, 1693
AvrII CCTAGG 2 cut(s) 536, 1429
BanI GGYRCC 1 cut(s) 1309
BanII GRGCYC 1 cut(s) 719
BauI CACGAG 1 cut(s) 1745
BbsI GAAGAC 2 cut(s) 254, 1441
Bbv12I GWGCWC 1 cut(s) 719
BbvI GCAGC 6 cut(s) 152, 506, 582, 1280, 1629, 1634
BccI CCATC 9 cut(s) 251, 329, 391, 538, 654, 664, 1169, 1628, 1705
BciT130I CCWGG 2 cut(s) 243, 1314
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 2 cut(s) 1137, 1724
BcoDI GTCTC 2 cut(s) 1024, 1514
BfaI CTAG 8 cut(s) 237, 537, 720, 867, 1038, 1361, 1407, 1430
BfmI CTRYAG 1 cut(s) 1643
BglI GCCNNNNNGGC 1 cut(s) 671
BisI GCNGC 7 cut(s) 141, 495, 571, 1269, 1623, 1643, 1806
BlnI CCTAGG 2 cut(s) 536, 1429
BlsI GCNGC 7 cut(s) 142, 496, 572, 1270, 1624, 1644, 1807
Bme1390I CCNGG 4 cut(s) 243, 1137, 1314, 1724
Bme18I GGWCC 3 cut(s) 1336, 1491, 1693
BmgT120I GGNCC 5 cut(s) 400, 663, 1336, 1491, 1693
BmiI GGNNCC 3 cut(s) 1311, 1493, 1695
BmrFI CCNGG 4 cut(s) 243, 1137, 1314, 1724
BmsI GCATC 3 cut(s) 726, 1144, 1166
BpiI GAAGAC 2 cut(s) 254, 1441
BpmI CTGGAG 2 cut(s) 192, 597
BpuEI CTTGAG 2 cut(s) 1006, 1427
BpuMI CCSGG 2 cut(s) 1137, 1724
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 7 cut(s) 11, 241, 242, 267, 536, 1274, 1429
BsaWI WCCGGW 2 cut(s) 405, 1234
BsaXI ACNNNNNCTCC 4 cut(s) 706, 736, 1271, 1301
Bsc4I CCNNNNNNNGG 5 cut(s) 242, 409, 1475, 1500, 1501
Bse118I RCCGGY 1 cut(s) 1625
Bse1I ACTGG 1 cut(s) 1595
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 2 cut(s) 243, 1314
BseDI CCNNGG 7 cut(s) 11, 241, 242, 267, 536, 1274, 1429
BseGI GGATG 5 cut(s) 262, 784, 1387, 1510, 1732
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 242, 409, 1475, 1500, 1501
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 9 cut(s) 140, 266, 520, 528, 704, 765, 968, 1059, 1175
BseNI ACTGG 1 cut(s) 1595
BseRI GAGGAG 3 cut(s) 79, 335, 380
BseXI GCAGC 6 cut(s) 152, 506, 582, 1280, 1629, 1634
BsgI GTGCAG 1 cut(s) 1536
BshFI GGCC 6 cut(s) 10, 235, 266, 402, 665, 1629
BshNI GGYRCC 1 cut(s) 1309
BsiHKAI GWGCWC 1 cut(s) 719
BsiSI CCGG 5 cut(s) 406, 1136, 1235, 1626, 1724
BslI CCNNNNNNNGG 5 cut(s) 242, 409, 1475, 1500, 1501
BsmAI GTCTC 2 cut(s) 1024, 1514
BsmI GAATGC 1 cut(s) 1672
BsnI GGCC 6 cut(s) 10, 235, 266, 402, 665, 1629
Bsp1286I GDGCHC 1 cut(s) 719
Bsp143I GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
Bsp19I CCATGG 3 cut(s) 11, 267, 1274
BspACI CCGC 3 cut(s) 83, 905, 950
BspANI GGCC 6 cut(s) 10, 235, 266, 402, 665, 1629
BspCNI CTCAG 9 cut(s) 139, 265, 519, 527, 703, 766, 969, 1060, 1174
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 1311, 1493, 1695
BspMAI CTGCAG 1 cut(s) 1647
BspPI GGATC 3 cut(s) 94, 558, 1486
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 1309
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 1625
BsrI ACTGG 1 cut(s) 1595
BssAI RCCGGY 1 cut(s) 1625
BssECI CCNNGG 7 cut(s) 11, 241, 242, 267, 536, 1274, 1429
BssMI GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
BssSI CACGAG 1 cut(s) 1745
BssT1I CCWWGG 5 cut(s) 11, 267, 536, 1274, 1429
Bst2BI CACGAG 1 cut(s) 1745
Bst2UI CCWGG 2 cut(s) 243, 1314
Bst6I CTCTTC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 1523
BstC8I GCNNGC 3 cut(s) 741, 1596, 1627
BstDEI CTNAG 9 cut(s) 126, 252, 506, 514, 690, 774, 977, 1068, 1161
BstDSI CCRYGG 3 cut(s) 11, 267, 1274
BstF5I GGATG 5 cut(s) 262, 784, 1387, 1510, 1732
BstKTI GATC 7 cut(s) 89, 184, 372, 553, 924, 1481, 1772
BstMAI GTCTC 2 cut(s) 1024, 1514
BstMBI GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
BstMWI GCNNNNNNNGC 4 cut(s) 671, 1079, 1309, 1523
BstNI CCWGG 2 cut(s) 243, 1314
BstNSI RCATGY 2 cut(s) 604, 707
BstSCI CCNGG 4 cut(s) 241, 1135, 1312, 1722
BstSFI CTRYAG 1 cut(s) 1643
BstV1I GCAGC 6 cut(s) 152, 506, 582, 1280, 1629, 1634
BstV2I GAAGAC 2 cut(s) 254, 1441
BsuRI GGCC 6 cut(s) 10, 235, 266, 402, 665, 1629
BtgI CCRYGG 3 cut(s) 11, 267, 1274
BtsCI GGATG 5 cut(s) 262, 784, 1387, 1510, 1732
BtsI GCAGTG 1 cut(s) 1652
BtsIMutI CAGTG 3 cut(s) 514, 1169, 1652
Cac8I GCNNGC 3 cut(s) 741, 1596, 1627
CaiI CAGNNNCTG 1 cut(s) 1523
CciI TCATGA 1 cut(s) 943
Cfr10I RCCGGY 1 cut(s) 1625
Cfr13I GGNCC 5 cut(s) 400, 663, 1336, 1491, 1693
Csp6I GTAC 3 cut(s) 163, 723, 1714
CspCI CAANNNNNGTGG 6 cut(s) 1159, 1194, 1287, 1322, 1552, 1587
CviQI GTAC 3 cut(s) 163, 723, 1714
DdeI CTNAG 9 cut(s) 126, 252, 506, 514, 690, 774, 977, 1068, 1161
DpnI GATC 7 cut(s) 88, 183, 371, 552, 923, 1480, 1771
DpnII GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
DrdI GACNNNNNNGTC 2 cut(s) 118, 518
DseDI GACNNNNNNGTC 2 cut(s) 118, 518
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Ecl136II GAGCTC 1 cut(s) 717
Eco130I CCWWGG 5 cut(s) 11, 267, 536, 1274, 1429
Eco147I AGGCCT 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 1336, 1491, 1693
Eco53kI GAGCTC 1 cut(s) 717
Eco57I CTGAAG 3 cut(s) 577, 1203, 1539
EcoICRI GAGCTC 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 241, 1312
EcoT14I CCWWGG 5 cut(s) 11, 267, 536, 1274, 1429
EcoT22I ATGCAT 1 cut(s) 1159
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 5 cut(s) 11, 267, 536, 1274, 1429
FalI AAGNNNNNCTT 2 cut(s) 1436, 1468
FauI CCCGC 2 cut(s) 76, 943
FauNDI CATATG 1 cut(s) 1534
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 7 cut(s) 141, 495, 571, 1269, 1623, 1643, 1806
FokI GGATG 5 cut(s) 269, 791, 1394, 1517, 1739
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 7 cut(s) 141, 495, 571, 1269, 1623, 1643, 1806
FspBI CTAG 8 cut(s) 237, 537, 720, 867, 1038, 1361, 1407, 1430
GluI GCNGC 7 cut(s) 141, 495, 571, 1269, 1623, 1643, 1806
GsuI CTGGAG 2 cut(s) 192, 597
HaeIII GGCC 6 cut(s) 10, 235, 266, 402, 665, 1629
HapII CCGG 5 cut(s) 406, 1136, 1235, 1626, 1724
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HpaII CCGG 5 cut(s) 406, 1136, 1235, 1626, 1724
HphI GGTGA 9 cut(s) 26, 61, 282, 317, 519, 743, 1337, 1458, 1649
Hpy166II GTNNAC 1 cut(s) 765
Hpy188III TCNNGA 9 cut(s) 254, 614, 692, 944, 1038, 1221, 1334, 1361, 1397
Hpy8I GTNNAC 1 cut(s) 765
HpyAV CCTTC 6 cut(s) 601, 705, 801, 1181, 1563, 1752
HpyCH4V TGCA 8 cut(s) 362, 494, 630, 1157, 1517, 1645, 1744, 1805
HpyF10VI GCNNNNNNNGC 4 cut(s) 671, 1079, 1309, 1523
HpyF3I CTNAG 9 cut(s) 126, 252, 506, 514, 690, 774, 977, 1068, 1161
KroI GCCGGC 1 cut(s) 1625
KroNI GCCGGC 1 cut(s) 1627
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 6 cut(s) 66, 211, 322, 694, 714, 1276
Lsp1109I GCAGC 6 cut(s) 152, 506, 582, 1280, 1629, 1634
LweI GCATC 3 cut(s) 726, 1144, 1166
MaeI CTAG 8 cut(s) 237, 537, 720, 867, 1038, 1361, 1407, 1430
MaeIII GTNAC 4 cut(s) 509, 525, 788, 1240
MalI GATC 7 cut(s) 88, 183, 371, 552, 923, 1480, 1771
MboI GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
MfeI CAATTG 1 cut(s) 1482
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 6 cut(s) 76, 391, 685, 1115, 1400, 1482
MlyI GAGTC 4 cut(s) 244, 506, 626, 1223
MmeI TCCRAC 1 cut(s) 1757
Mph1103I ATGCAT 1 cut(s) 1159
MroNI GCCGGC 1 cut(s) 1625
MseI TTAA 6 cut(s) 558, 677, 756, 1118, 1544, 1800
MslI CAYNNNNRTG 4 cut(s) 330, 558, 625, 1162
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 5 cut(s) 406, 1136, 1235, 1626, 1724
MspR9I CCNGG 4 cut(s) 243, 1137, 1314, 1724
MunI CAATTG 1 cut(s) 1482
Mva1269I GAATGC 1 cut(s) 1672
MvaI CCWGG 2 cut(s) 243, 1314
MwoI GCNNNNNNNGC 4 cut(s) 671, 1079, 1309, 1523
NaeI GCCGGC 1 cut(s) 1627
NciI CCSGG 2 cut(s) 1137, 1724
NcoI CCATGG 3 cut(s) 11, 267, 1274
NdeI CATATG 1 cut(s) 1534
NdeII GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
NgoMIV GCCGGC 1 cut(s) 1625
NlaIV GGNNCC 3 cut(s) 1311, 1493, 1695
NmuCI GTSAC 3 cut(s) 509, 525, 788
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 2 cut(s) 604, 707
PagI TCATGA 1 cut(s) 943
PasI CCCWGGG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 843
PctI GAATGC 1 cut(s) 1672
PdiI GCCGGC 1 cut(s) 1627
PfeI GAWTC 8 cut(s) 347, 812, 836, 860, 1091, 1330, 1508, 1652
PflFI GACNNNGTC 1 cut(s) 1495
PfoI TCCNGGA 1 cut(s) 1135
PkrI GCNGC 7 cut(s) 142, 496, 572, 1270, 1624, 1644, 1807
PleI GAGTC 4 cut(s) 244, 506, 625, 1223
PpsI GAGTC 4 cut(s) 244, 506, 625, 1223
PshBI ATTAAT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 241, 1312
PspGI CCWGG 2 cut(s) 241, 1312
PspN4I GGNNCC 3 cut(s) 1311, 1493, 1695
PspPI GGNCC 5 cut(s) 400, 663, 1336, 1491, 1693
PstI CTGCAG 1 cut(s) 1647
PstNI CAGNNNCTG 1 cut(s) 1523
PsyI GACNNNGTC 1 cut(s) 1495
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 164, 724, 1715
RsaNI GTAC 3 cut(s) 163, 723, 1714
RseI CAYNNNNRTG 4 cut(s) 330, 558, 625, 1162
SacI GAGCTC 1 cut(s) 719
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 6 cut(s) 558, 677, 756, 1118, 1544, 1800
SatI GCNGC 7 cut(s) 141, 495, 571, 1269, 1623, 1643, 1806
Sau3AI GATC 7 cut(s) 86, 181, 369, 550, 921, 1478, 1769
Sau96I GGNCC 5 cut(s) 400, 663, 1336, 1491, 1693
SchI GAGTC 4 cut(s) 244, 506, 626, 1223
ScrFI CCNGG 4 cut(s) 243, 1137, 1314, 1724
SduI GDGCHC 1 cut(s) 719
SfaNI GCATC 3 cut(s) 726, 1144, 1166
SfcI CTRYAG 1 cut(s) 1643
SinI GGWCC 3 cut(s) 1336, 1491, 1693
SmiMI CAYNNNNRTG 4 cut(s) 330, 558, 625, 1162
SmlI CTYRAG 2 cut(s) 1021, 1442
SmoI CTYRAG 2 cut(s) 1021, 1442
Sse9I AATT 6 cut(s) 76, 391, 685, 1115, 1400, 1482
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 83, 905, 950
SspMI CTAG 8 cut(s) 237, 537, 720, 867, 1038, 1361, 1407, 1430
SstI GAGCTC 1 cut(s) 719
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 4 cut(s) 241, 1135, 1312, 1722
StyI CCWWGG 5 cut(s) 11, 267, 536, 1274, 1429
TaqI TCGA 5 cut(s) 395, 881, 1078, 1632, 1791
TasI AATT 6 cut(s) 76, 391, 685, 1115, 1400, 1482
TatI WGTACW 2 cut(s) 162, 722
TfiI GAWTC 8 cut(s) 347, 812, 836, 860, 1091, 1330, 1508, 1652
Tru1I TTAA 6 cut(s) 558, 677, 756, 1118, 1544, 1800
Tru9I TTAA 6 cut(s) 558, 677, 756, 1118, 1544, 1800
TscAI CASTG 3 cut(s) 514, 1169, 1652
TseFI GTSAC 3 cut(s) 509, 525, 788
TseI GCWGC 7 cut(s) 140, 494, 570, 1268, 1622, 1642, 1805
Tsp45I GTSAC 3 cut(s) 509, 525, 788
TspDTI ATGAA 7 cut(s) 86, 210, 342, 501, 810, 1010, 1521
TspRI CASTG 3 cut(s) 514, 1169, 1652
Tth111I GACNNNGTC 1 cut(s) 1495
VpaK11BI GGWCC 3 cut(s) 1336, 1491, 1693
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 2 cut(s) 685, 1400
XbaI TCTAGA 2 cut(s) 1037, 1360
XceI RCATGY 2 cut(s) 604, 707
XmaJI CCTAGG 2 cut(s) 536, 1429
XspI CTAG 8 cut(s) 237, 537, 720, 867, 1038, 1361, 1407, 1430
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.