Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001556.1

Orthogroup ID

OG0019472

Physical Location & Seq

Genomic Coordinates Reverse (-)

96156 .. 99782

Gene Structure 3627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgagatccacggcaccgaagcaacccatatccgccctgacatcgctgccgcaaccacaaggcagcgacccatttcagatgagaacacagaatatccgatctgtggctcctgagaaggatgaccaactaaaatcgaagcacccctacggtgttcgacgaccaagcagtggctggggctctcctccggtcgggtcagcaccgcagcattacagtgctcctcttcctccgccgctcgaggagcagaggatcgtgcctctcccggagaaggtcaagaagagccgccgcgcttttcttccccacggcggcaatgagtggcctcaccaccacctccgcaccgccgcgattactcgcaatcccagcacgacaccgtttcaccgacaattcatggacttccatcgccatccccaaacctcatctcagagctccatgaatcatttgcatggcggcgccgtatttgattacgaagctggaatctgcagagaagacatggaaagaattatcagtatgattttcaattactgtgattggaatgatgtcgtgtcgaatcccagtgagtacccgaggttggcacaatccgtggcggtcttgatgaggtactgcagagttgtgtcaatctataaggaatataaggactgtgagaagcagttagaagagagtaaagcagatgaagatggcaatgatgaagaaatggcagtaatgatatcgtatgaaattgagtctttgtccaatcaaatgaaagaacttgaggagaagcttaaggctgaaaaaggaggatacaagacctatgggatggagatcaaaggaaagcgtgtatacagcaaattaaaatatgaatctggtgttcactgggttcaacgtgttcctcatacggaaacaatgagtacggattctgcgccagtcagttgtccaacaatgtctgcaggaccaaagtatgagtacggatgtgttgatggagttaacattcaagaaaccaatagaggcttctgctccaaaatttgtggaatatttaatggactggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

340

Amino Acids

38.5

Weight (kDa)

7.2

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	254 - 293	1.3e-11	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019472)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014089
rosa_multiflora	Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha	Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 446
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	2 cut(s)	285, 341
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	993
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	4 cut(s)	557, 596, 883, 938
AfiI	CCNNNNNNNGG	6 cut(s)	103, 167, 188, 265, 302, 565
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	3 cut(s)	514, 854, 965
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AluBI	AGCT	3 cut(s)	423, 467, 754
AluI	AGCT	3 cut(s)	423, 467, 754
Alw21I	GWGCWC	2 cut(s)	217, 425
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	171
Ama87I	CYCGRG	2 cut(s)	233, 559
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	46, 63, 202
ApoI	RAATTY	1 cut(s)	993
AspLEI	GCGC	3 cut(s)	287, 449, 895
AspS9I	GGNCC	1 cut(s)	923
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	311, 365
AvaI	CYCGRG	2 cut(s)	233, 559
AvaII	GGWCC	1 cut(s)	923
BanI	GGYRCC	2 cut(s)	13, 446
BanII	GRGCYC	2 cut(s)	179, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	217, 425
BbvI	GCAGC	3 cut(s)	33, 75, 214
BccI	CCATC	5 cut(s)	402, 408, 665, 784, 944
BceAI	ACGGC	3 cut(s)	27, 316, 434
BciVI	GTATCC	1 cut(s)	767
BcnI	CCSGG	1 cut(s)	260
BfmI	CTRYAG	3 cut(s)	475, 598, 918
BfoI	RGCGCY	1 cut(s)	450
BfrI	CTTAAG	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	767
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	923
BmeT110I	CYCGRG	2 cut(s)	233, 559
BmgT120I	GGNCC	1 cut(s)	923
BmiI	GGNNCC	3 cut(s)	15, 108, 448
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	2 cut(s)	543, 856
BmuI	ACTGGG	2 cut(s)	543, 856
BpiI	GAAGAC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	794
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	9, 298, 560, 576
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	6 cut(s)	103, 167, 188, 265, 302, 565
Bse1I	ACTGG	4 cut(s)	549, 851, 896, 1020
Bse3DI	GCAATG	2 cut(s)	313, 682
Bse8I	GATNNNNATC	1 cut(s)	794
BseDI	CCNNGG	4 cut(s)	9, 298, 560, 576
BseGI	GGATG	4 cut(s)	124, 400, 795, 947
BseJI	GATNNNNATC	1 cut(s)	794
BseLI	CCNNNNNNNGG	6 cut(s)	103, 167, 188, 265, 302, 565
BseMI	GCAATG	2 cut(s)	313, 682
BseMII	CTCAG	2 cut(s)	102, 431
BseNI	ACTGG	4 cut(s)	549, 851, 896, 1020
BseRI	GAGGAG	4 cut(s)	171, 207, 251, 761
BseXI	GCAGC	3 cut(s)	33, 75, 214
BseYI	CCCAGC	2 cut(s)	171, 356
Bsh1236I	CGCG	2 cut(s)	285, 341
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	2 cut(s)	13, 446
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	217, 425
BsiHKCI	CYCGRG	2 cut(s)	233, 559
BsiSI	CCGG	2 cut(s)	185, 260
BslI	CCNNNNNNNGG	6 cut(s)	103, 167, 188, 265, 302, 565
BsnI	GGCC	1 cut(s)	316
BsoBI	CYCGRG	2 cut(s)	233, 559
Bsp1286I	GDGCHC	3 cut(s)	179, 217, 425
Bsp143I	GATC	4 cut(s)	5, 98, 246, 795
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	103, 430
BspFNI	CGCG	2 cut(s)	285, 341
BspLI	GGNNCC	3 cut(s)	15, 108, 448
BspMAI	CTGCAG	3 cut(s)	479, 602, 922
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	269
BspT107I	GGYRCC	2 cut(s)	13, 446
BspTI	CTTAAG	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	313, 682
BsrI	ACTGG	4 cut(s)	549, 851, 896, 1020
BssECI	CCNNGG	4 cut(s)	9, 298, 560, 576
BssMI	GATC	4 cut(s)	5, 98, 246, 795
BssNAI	GTATAC	1 cut(s)	814
BssNI	GRCGYC	1 cut(s)	447
Bst1107I	GTATAC	1 cut(s)	814
Bst4CI	ACNGT	5 cut(s)	149, 212, 369, 521, 635
Bst6I	CTCTTC	3 cut(s)	225, 269, 645
BstACI	GRCGYC	1 cut(s)	447
BstAFI	CTTAAG	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	111, 417
BstDSI	CCRYGG	3 cut(s)	9, 298, 576
BstF5I	GGATG	4 cut(s)	124, 400, 795, 947
BstFNI	CGCG	2 cut(s)	285, 341
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	3 cut(s)	287, 449, 895
BstKTI	GATC	4 cut(s)	8, 101, 249, 798
BstMBI	GATC	4 cut(s)	5, 98, 246, 795
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 357
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	475, 598, 918
BstUI	CGCG	2 cut(s)	285, 341
BstV1I	GCAGC	3 cut(s)	33, 75, 214
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BstZ17I	GTATAC	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	1 cut(s)	316
BtgI	CCRYGG	3 cut(s)	9, 298, 576
BtgZI	GCGATG	2 cut(s)	27, 380
BtsCI	GGATG	4 cut(s)	124, 400, 795, 947
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	4 cut(s)	172, 217, 556, 844
CaiI	CAGNNNCTG	1 cut(s)	171
CfoI	GCGC	3 cut(s)	287, 449, 895
Cfr13I	GGNCC	1 cut(s)	923
Csp6I	GTAC	4 cut(s)	556, 595, 882, 937
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviAII	CATG	4 cut(s)	385, 427, 440, 487
CviQI	GTAC	4 cut(s)	556, 595, 882, 937
DdeI	CTNAG	2 cut(s)	111, 417
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	4 cut(s)	7, 100, 248, 797
DpnII	GATC	4 cut(s)	5, 98, 246, 795
Eam1104I	CTCTTC	3 cut(s)	225, 269, 645
EarI	CTCTTC	3 cut(s)	225, 269, 645
EciI	GGCGGA	2 cut(s)	22, 216
Ecl136II	GAGCTC	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	179, 425
Eco32I	GATATC	1 cut(s)	702
Eco47I	GGWCC	1 cut(s)	923
Eco53kI	GAGCTC	1 cut(s)	423
Eco88I	CYCGRG	2 cut(s)	233, 559
EcoICRI	GAGCTC	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	702
EcoT38I	GRGCYC	2 cut(s)	179, 425
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
FaeI	CATG	4 cut(s)	388, 430, 443, 490
FatI	CATG	4 cut(s)	384, 426, 439, 486
FblI	GTMKAC	1 cut(s)	813
FokI	GGATG	4 cut(s)	131, 387, 802, 954
FriOI	GRGCYC	2 cut(s)	179, 425
GlaI	GCGC	3 cut(s)	286, 448, 894
GsaI	CCCAGC	2 cut(s)	175, 360
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	2 cut(s)	185, 260
HhaI	GCGC	3 cut(s)	287, 449, 895
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	388, 430, 443, 490
Hin6I	GCGC	3 cut(s)	285, 447, 893
HinP1I	GCGC	3 cut(s)	285, 447, 893
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	6 cut(s)	430, 471, 544, 716, 833, 887
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	2 cut(s)	185, 260
HphI	GGTGA	2 cut(s)	311, 365
Hpy166II	GTNNAC	3 cut(s)	814, 844, 958
Hpy188I	TCNGA	3 cut(s)	78, 98, 420
Hpy188III	TCNNGA	4 cut(s)	110, 271, 586, 965
Hpy8I	GTNNAC	3 cut(s)	814, 844, 958
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	109, 259
HpyCH4III	ACNGT	5 cut(s)	149, 212, 369, 521, 635
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	4 cut(s)	439, 477, 600, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 357
HpyF3I	CTNAG	2 cut(s)	111, 417
HpySE526I	ACGT	1 cut(s)	856
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	388, 430, 443, 490
HspAI	GCGC	3 cut(s)	285, 447, 893
KasI	GGCGCC	1 cut(s)	446
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	4 cut(s)	5, 98, 246, 795
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	5 cut(s)	112, 220, 238, 428, 992
Lsp1109I	GCAGC	3 cut(s)	33, 75, 214
MaeII	ACGT	1 cut(s)	856
MalI	GATC	4 cut(s)	7, 100, 248, 797
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	4 cut(s)	5, 98, 246, 795
MboII	GAAGA	7 cut(s)	212, 284, 286, 494, 662, 680, 695
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	3 cut(s)	179, 217, 425
MluCI	AATT	6 cut(s)	380, 495, 514, 711, 821, 993
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	932
MseI	TTAA	4 cut(s)	756, 824, 957, 1008
MslI	CAYNNNNRTG	2 cut(s)	210, 438
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	2 cut(s)	185, 260
MspR9I	CCNGG	1 cut(s)	260
MvnI	CGCG	2 cut(s)	285, 341
MwoI	GCNNNNNNNGC	2 cut(s)	238, 357
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	4 cut(s)	5, 98, 246, 795
NlaIII	CATG	4 cut(s)	388, 430, 443, 490
NlaIV	GGNNCC	3 cut(s)	15, 108, 448
PaeR7I	CTCGAG	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	5 cut(s)	430, 471, 544, 833, 887
PflMI	CCANNNNNTGG	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	1 cut(s)	724
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	425
PspFI	CCCAGC	2 cut(s)	171, 356
PspN4I	GGNNCC	3 cut(s)	15, 108, 448
PspPI	GGNCC	1 cut(s)	923
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	3 cut(s)	479, 602, 922
PstNI	CAGNNNCTG	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	4 cut(s)	557, 596, 883, 938
RsaNI	GTAC	4 cut(s)	556, 595, 882, 937
RseI	CAYNNNNRTG	2 cut(s)	210, 438
SacI	GAGCTC	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	756, 824, 957, 1008
Sau3AI	GATC	4 cut(s)	5, 98, 246, 795
Sau96I	GGNCC	1 cut(s)	923
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	179, 217, 425
SfcI	CTRYAG	3 cut(s)	475, 598, 918
SfoI	GGCGCC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	923
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	210, 438
SmlI	CTYRAG	3 cut(s)	233, 743, 755
SmoI	CTYRAG	3 cut(s)	233, 743, 755
Sse9I	AATT	6 cut(s)	380, 495, 514, 711, 821, 993
SspDI	GGCGCC	1 cut(s)	446
SspI	AATATT	1 cut(s)	1005
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	149, 212, 369, 521, 635
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	4 cut(s)	134, 154, 234, 542
TasI	AATT	6 cut(s)	380, 495, 514, 711, 821, 993
TauI	GCSGC	7 cut(s)	52, 232, 282, 285, 306, 341, 447
TfiI	GAWTC	5 cut(s)	430, 471, 544, 833, 887
Tru1I	TTAA	4 cut(s)	756, 824, 957, 1008
Tru9I	TTAA	4 cut(s)	756, 824, 957, 1008
TscAI	CASTG	4 cut(s)	172, 217, 556, 851
TseI	GCWGC	3 cut(s)	46, 63, 202
TspDTI	ATGAA	7 cut(s)	373, 443, 681, 696, 723, 749, 846
TspGWI	ACGGA	4 cut(s)	565, 884, 899, 954
TspRI	CASTG	4 cut(s)	172, 217, 556, 851
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	923
XapI	RAATTY	1 cut(s)	993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.