Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0019984

Physical Location & Seq

Genomic Coordinates Forward (+)

19102 .. 20140

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaactttatgaggatgagcaactagagctaatggagttggttgctgcaagcaagggattatcctcaataattagtattgatcccggcaccaaccttgatgaatgcagagatgttcttgagttatggccttttactgtggatgagtttgttcaagcttttcatgactgtgagccgctattaagtgattcaaggttgttaggagagattcatgttgctctgttgaggttgattataaaggatatagaagatattgcaaggacaccttctactggactaggtctcaatcaaaatggtgctgctaatcctgtaggtggacatccgcagattgttggaggagtaatttccactctctgcatgcttgcaccagttcttttgcttatcttatgtatttttccccaatttttcttcgaagttacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

140

Amino Acids

15.35

Weight (kDa)

4.16

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDT	PF02791	38 - 81	8.9e-12	DDT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019984)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004399 RLG00000004400 RLG00000013638 RLG00000031636
rosa_multiflora	Rmu_sc0001643.1_g000004
rosa_samantha	Rh2CG322000 Rh2DG359700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	176, 323
AclWI	GGATC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	272, 314
AgsI	TTSAA	2 cut(s)	155, 192
AluBI	AGCT	2 cut(s)	31, 158
AluI	AGCT	2 cut(s)	31, 158
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	47, 299
AsuC2I	CCSGG	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	34, 286
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	26, 278
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	48, 176, 300
BlsI	GCNGC	3 cut(s)	49, 177, 301
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 314
Bse1I	ACTGG	2 cut(s)	277, 368
BseGI	GGATG	3 cut(s)	22, 148, 319
BseLI	CCNNNNNNNGG	2 cut(s)	272, 314
BseNI	ACTGG	2 cut(s)	277, 368
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	34, 286
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	272, 314
BsmAI	GTCTC	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	176, 323
BspANI	GGCC	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	277, 368
BssMI	GATC	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	139, 170
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	52, 359, 363
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	22, 148, 319
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	34, 286
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	22, 148, 319
Cac8I	GCNNGC	3 cut(s)	52, 359, 363
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	3 cut(s)	164, 212, 358
CviJI	RGCY	4 cut(s)	31, 130, 158, 175
CviKI_1	RGCY	4 cut(s)	31, 130, 158, 175
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	167, 215, 361
FaiI	YATR	8 cut(s)	12, 127, 165, 213, 236, 245, 359, 388
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	3 cut(s)	163, 211, 357
Fnu4HI	GCNGC	3 cut(s)	48, 176, 300
FokI	GGATG	3 cut(s)	29, 155, 306
Fsp4HI	GCNGC	3 cut(s)	48, 176, 300
FspBI	CTAG	2 cut(s)	26, 278
GluI	GCNGC	3 cut(s)	48, 176, 300
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	3 cut(s)	167, 215, 361
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	188, 208
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	119, 164
Hpy8I	GTNNAC	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	139, 170
HpyCH4V	TGCA	5 cut(s)	50, 108, 257, 357, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	167, 215, 361
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	100, 258, 321, 381
Lsp1109I	GCAGC	2 cut(s)	34, 286
MaeI	CTAG	2 cut(s)	26, 278
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	260, 400
MluCI	AATT	3 cut(s)	72, 342, 401
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	4 cut(s)	7, 76, 219, 329
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	3 cut(s)	167, 215, 361
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	361
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	188, 208
PflFI	GACNNNGTC	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	49, 177, 301
PsiI	TTATAA	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	48, 176, 300
Sau3AI	GATC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	8 cut(s)	33, 99, 160, 197, 230, 268, 283, 316
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	3 cut(s)	72, 342, 401
SsiI	CCGC	2 cut(s)	176, 323
SspMI	CTAG	2 cut(s)	26, 278
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	139, 170
TaqI	TCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	72, 342, 401
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	188, 208
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	47, 299
TspDTI	ATGAA	3 cut(s)	117, 152, 200
Tth111I	GACNNNGTC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	2 cut(s)	26, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.