Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001670.1

Orthogroup ID

OG0016067

Physical Location & Seq

Genomic Coordinates Forward (+)

188652 .. 190031

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

atgtttgccgatgacagcagcttaccgagggccagtactttcggcaatgccgtccattccgatcccaatatttcggcctccgccatgtcccccgacgtcattcacgactaccaaatgcgaaacagtagcgccgcggccttcgaccccacccggctcagcggcgagggctctcccatgactatgtcaccatggaaccaaacctctgcctctccgttcaccaagtcgccgtggacgccgttcgaagacaaggtccccaagaacggcctcctcggctctctcattcgcgaggaaggccacatctactctctcgccgccaccggagaccttctgtacaccggttccgacagcaagaatatcagagtatggaagaatctcaaggagtacagcggcttcaagtctaacagcggcttggtgaaagcaattgttatctccggggagaagctcttcacaggtcaccaggacggcaagattagggtttggagagtctcttccaaagacccgaaagttcacaaacgagccgggacgatgccgactctgatggacattttcaagtactccgtcaaacccagcaactacgttcaagttaggaaaacgaaagcgctttggatcaggcactccgacgccgtttcctgtctgagcttgagcgaagacaagaggcttttgtattctgcctcctgggaccgcacgctaaaagtctggcggatcgacacctccaaatgcatcgagtccatccacgcgcacgacgacgccgttaactccgtcgtggccagcgtcgaagggctgttgtacaccggcgcggcggacgggacggtgaaggtttggaagaaggagcagagtgggaagatgatcaaacactctttggtgcagacgctgctgaagcaagagagcgcggtgaccgcactcgcggtgagcgcgtctgggtctctcgtctactgtgggtcgtcggatgggttggttaatttctgggagcgcgagaagcagttatcgcatggtggggtcctcaaggggcacaggctggctgtgctgtgcttggcggcggctgggagcctggtgttcagcggctcggctgataagaccatatgcgtgtggaggagggacggcgtgatccacacgtgcctgtcagttttggcgggccacactgggccggtgaagtgcttggccgttgaggaggatcgtgaacgttcgaccaacggtgatcaccggttgatcgtgtacagtgggagcctggataagtctgtgaaggtgtggggggtgtcggagcaagctccggagctcactcccatgtccatgcagacccagttgattaccgacgccgactcgctaccgtccgagggaagctactcttcttcgagccggtccggccaggacagaaggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0022414 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032501 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044706 GO:0045159 GO:0046777 GO:0051301 GO:0051704 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

459

Amino Acids

50.03

Weight (kDa)

8.97

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_SCAP	PF24017	79 - 328	7.4e-12	SCAP Beta-propeller
Beta-prop_Nup120_160	PF11715	95 - 245	5.5e-06	Nucleoporin Nup120/160, beta-propeller domain
Beta-prop_WDR5	PF25175	106 - 278	1.9e-15	WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	144 - 321	2.1e-06	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	144 - 288	7.6e-14	WDHD1 first WD40 domain
WDR55	PF24796	174 - 282	1.9e-10	WDR55
WD40_Gbeta	PF25391	198 - 363	6.4e-14	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	199 - 286	8.5e-08	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	204 - 345	2.1e-13	CDC20/Fizzy WD40 domain
WD40	PF00400	204 - 233	5e-07	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	205 - 327	8.6e-15	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	205 - 394	5.3e-06	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	205 - 275	2.3e-12	WDR3 first beta-propeller domain
EIF3I	PF24805	205 - 325	5.4e-06	EIF3I
Beta-prop_EML	PF23409	205 - 389	4.3e-12	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd	PF25172	205 - 325	6.8e-17	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	208 - 326	2.5e-15	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	211 - 364	5.5e-13	Echinoderm microtubule-associated protein second beta-propeller
NBCH_WD40	PF20426	211 - 279	3.6e-06	Neurobeachin beta propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	216 - 326	9e-08	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	262 - 421	9.2e-19	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	284 - 427	2.8e-20	WDR3 first beta-propeller domain
WDR55	PF24796	293 - 419	6.8e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	307 - 425	7.6e-12	TEP-1 second beta-propeller
WD40_Prp19	PF24814	341 - 452	1.5e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	346 - 423	1.6e-07	THOC3 beta-propeller domain
WD40	PF00400	371 - 416	9.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26490
fragaria_vesca	FvH4_2g40541
malus_domestica	MD00G1038200.v1.1 MD08G1039100.v1.1
prunus_persica	Prupe.1G386600_v2.0.a1
pyrus_communis	pycom08g03080
rosa_chinensis	RchiOBHm_Chr6g0300181
rosa_laevigata	RLG00000011360
rosa_multiflora	Rmu_sc0001670.1_g000038
rosa_roxburghii	Rroxscaffold_7G00168030
rosa_samantha	Rh6AG406000 Rh6BG414000 Rh6CG421200 Rh6DG406800
rosa_wichuraiana	Rw6G035540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
AccIII	TCCGGA	1 cut(s)	1267
AclI	AACGTT	1 cut(s)	1180
AclWI	GGATC	5 cut(s)	56, 614, 710, 1099, 1179
AcoI	YGGCCR	3 cut(s)	765, 1158, 1360
AcuI	CTGAAG	1 cut(s)	896
AcvI	CACGTG	1 cut(s)	1113
AcyI	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
AfaI	GTAC	6 cut(s)	37, 332, 383, 554, 788, 1214
AfeI	AGCGCT	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	260, 1331
AflIII	ACRYGT	1 cut(s)	1110
AgeI	ACCGGT	2 cut(s)	335, 1200
AgsI	TTSAA	3 cut(s)	394, 550, 581
AjnI	CCWGG	5 cut(s)	456, 674, 1047, 1224, 1362
AluBI	AGCT	6 cut(s)	21, 442, 639, 1265, 1273, 1338
AluI	AGCT	6 cut(s)	21, 442, 639, 1265, 1273, 1338
Alw21I	GWGCWC	1 cut(s)	1275
Alw26I	GTCTC	3 cut(s)	315, 490, 927
AlwI	GGATC	5 cut(s)	56, 614, 710, 1099, 1179
AlwNI	CAGNNNCTG	1 cut(s)	871
Aor13HI	TCCGGA	1 cut(s)	1267
Aor51HI	AGCGCT	1 cut(s)	600
ApeKI	GCWGC	2 cut(s)	18, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AsiGI	ACCGGT	2 cut(s)	335, 1200
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	7 cut(s)	131, 601, 739, 797, 890, 914, 972
AspS9I	GGNCC	7 cut(s)	30, 250, 679, 997, 1132, 1142, 1356
AsuC2I	CCSGG	3 cut(s)	151, 433, 520
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	4 cut(s)	250, 679, 997, 1356
BaeGI	GKGCMC	1 cut(s)	1011
BalI	TGGCCA	1 cut(s)	767
BanII	GRGCYC	2 cut(s)	170, 1275
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BbrPI	CACGTG	1 cut(s)	1113
BbsI	GAAGAC	2 cut(s)	249, 654
Bbv12I	GWGCWC	1 cut(s)	1275
BbvI	GCAGC	2 cut(s)	30, 858
BccI	CCATC	3 cut(s)	532, 737, 941
BceAI	ACGGC	9 cut(s)	35, 211, 220, 277, 478, 608, 734, 1114, 1145
BciT130I	CCWGG	5 cut(s)	458, 676, 1049, 1226, 1364
BclI	TGATCA	2 cut(s)	846, 1195
BcnI	CCSGG	3 cut(s)	151, 433, 520
BcoDI	GTCTC	3 cut(s)	315, 490, 927
BfoI	RGCGCY	2 cut(s)	132, 602
BglI	GCCNNNNNGGC	2 cut(s)	270, 1359
BlpI	GCTNAGC	1 cut(s)	155
BmcAI	AGTACT	2 cut(s)	37, 554
Bme1390I	CCNGG	8 cut(s)	151, 433, 458, 520, 676, 1049, 1226, 1364
Bme18I	GGWCC	4 cut(s)	250, 679, 997, 1356
BmgT120I	GGNCC	7 cut(s)	30, 250, 679, 997, 1132, 1142, 1356
BmiI	GGNNCC	7 cut(s)	194, 252, 340, 680, 998, 1046, 1223
BmrFI	CCNGG	8 cut(s)	151, 433, 458, 520, 676, 1049, 1226, 1364
BmrI	ACTGGG	2 cut(s)	1149, 1291
BmsI	GCATC	2 cut(s)	516, 729
BmuI	ACTGGG	2 cut(s)	1149, 1291
BpiI	GAAGAC	2 cut(s)	249, 654
Bpu1102I	GCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	3 cut(s)	359, 661, 986
BpuMI	CCSGG	3 cut(s)	151, 433, 520
BsaAI	YACGTR	1 cut(s)	1113
BsaHI	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
BsaI	GGTCTC	2 cut(s)	315, 927
BsaJI	CCNNGG	8 cut(s)	26, 132, 188, 227, 268, 432, 675, 1329
BsaWI	WCCGGW	4 cut(s)	317, 335, 1200, 1267
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 1331
Bse118I	RCCGGY	5 cut(s)	335, 791, 1144, 1200, 1353
Bse1I	ACTGG	3 cut(s)	33, 1144, 1297
Bse3DI	GCAATG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	1267
BseBI	CCWGG	5 cut(s)	458, 676, 1049, 1226, 1364
BseDI	CCNNGG	8 cut(s)	26, 132, 188, 227, 268, 432, 675, 1329
BseGI	GGATG	2 cut(s)	729, 952
BseLI	CCNNNNNNNGG	2 cut(s)	260, 1331
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	2 cut(s)	169, 626
BseNI	ACTGG	3 cut(s)	33, 1144, 1297
BseRI	GAGGAG	3 cut(s)	257, 1105, 1181
BseSI	GKGCMC	1 cut(s)	1011
BseXI	GCAGC	2 cut(s)	30, 858
BseYI	CCCAGC	2 cut(s)	566, 1040
BsgI	GTGCAG	1 cut(s)	884
Bsh1236I	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
BshTI	ACCGGT	2 cut(s)	335, 1200
BsiHKAI	GWGCWC	1 cut(s)	1275
BslFI	GGGAC	6 cut(s)	73, 236, 535, 692, 820, 1109
BslI	CCNNNNNNNGG	2 cut(s)	260, 1331
BsmAI	GTCTC	3 cut(s)	315, 490, 927
BsmFI	GGGAC	6 cut(s)	73, 236, 535, 692, 820, 1109
Bso31I	GGTCTC	2 cut(s)	315, 927
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	170, 1011, 1275
Bsp13I	TCCGGA	1 cut(s)	1267
Bsp1407I	TGTACA	3 cut(s)	330, 786, 1212
Bsp143I	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
Bsp1720I	GCTNAGC	1 cut(s)	155
Bsp19I	CCATGG	1 cut(s)	188
Bsp68I	TCGCGA	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	168, 627
BspEI	TCCGGA	1 cut(s)	1267
BspFNI	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
BspLI	GGNNCC	7 cut(s)	194, 252, 340, 680, 998, 1046, 1223
BspPI	GGATC	5 cut(s)	56, 614, 710, 1099, 1179
BspQI	GCTCTTC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	240
BspTNI	GGTCTC	2 cut(s)	315, 927
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	5 cut(s)	335, 791, 1144, 1200, 1353
BsrGI	TGTACA	3 cut(s)	330, 786, 1212
BsrI	ACTGG	3 cut(s)	33, 1144, 1297
BssAI	RCCGGY	5 cut(s)	335, 791, 1144, 1200, 1353
BssECI	CCNNGG	8 cut(s)	26, 132, 188, 227, 268, 432, 675, 1329
BssMI	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
BssNI	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	5 cut(s)	458, 676, 1049, 1226, 1364
Bst4CI	ACNGT	6 cut(s)	125, 811, 935, 1193, 1217, 1326
Bst6I	CTCTTC	3 cut(s)	449, 493, 1348
BstACI	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
BstAPI	GCANNNNNTGC	1 cut(s)	871
BstAUI	TGTACA	3 cut(s)	330, 786, 1212
BstBAI	YACGTR	1 cut(s)	1113
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	5 cut(s)	686, 769, 1017, 1132, 1263
BstDEI	CTNAG	2 cut(s)	155, 635
BstDSI	CCRYGG	3 cut(s)	132, 188, 227
BstEII	GGTNACC	2 cut(s)	452, 892
BstF5I	GGATG	2 cut(s)	729, 952
BstFNI	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
BstH2I	RGCGCY	2 cut(s)	132, 602
BstHHI	GCGC	7 cut(s)	131, 601, 739, 797, 890, 914, 972
BstKTI	GATC	8 cut(s)	64, 609, 705, 849, 1107, 1174, 1198, 1209
BstMAI	GTCTC	3 cut(s)	315, 490, 927
BstMBI	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
BstNI	CCWGG	5 cut(s)	458, 676, 1049, 1226, 1364
BstPI	GGTNACC	2 cut(s)	452, 892
BstSCI	CCNGG	8 cut(s)	149, 431, 456, 518, 674, 1047, 1224, 1362
BstSLI	GKGCMC	1 cut(s)	1011
BstUI	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
BstV1I	GCAGC	2 cut(s)	30, 858
BstV2I	GAAGAC	2 cut(s)	249, 654
BtgI	CCRYGG	3 cut(s)	132, 188, 227
BtsCI	GGATG	2 cut(s)	729, 952
BtsIMutI	CAGTG	2 cut(s)	1137, 1222
BtuMI	TCGCGA	1 cut(s)	285
Cac8I	GCNNGC	5 cut(s)	686, 769, 1017, 1132, 1263
CaiI	CAGNNNCTG	1 cut(s)	871
CfoI	GCGC	7 cut(s)	131, 601, 739, 797, 890, 914, 972
Cfr10I	RCCGGY	5 cut(s)	335, 791, 1144, 1200, 1353
Cfr13I	GGNCC	7 cut(s)	30, 250, 679, 997, 1132, 1142, 1356
Cfr42I	CCGCGG	1 cut(s)	135
CpoI	CGGWCCG	1 cut(s)	1356
CseI	GACGC	7 cut(s)	241, 629, 755, 760, 877, 903, 1319
Csp6I	GTAC	6 cut(s)	36, 331, 382, 553, 787, 1213
CspAI	ACCGGT	2 cut(s)	335, 1200
CspI	CGGWCCG	1 cut(s)	1356
CviAII	CATG	6 cut(s)	85, 175, 189, 989, 1282, 1288
CviQI	GTAC	6 cut(s)	36, 331, 382, 553, 787, 1213
DdeI	CTNAG	2 cut(s)	155, 635
DpnI	GATC	8 cut(s)	63, 608, 704, 848, 1106, 1173, 1197, 1208
DpnII	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
EaeI	YGGCCR	3 cut(s)	765, 1158, 1360
Eam1104I	CTCTTC	3 cut(s)	449, 493, 1348
EarI	CTCTTC	3 cut(s)	449, 493, 1348
EciI	GGCGGA	3 cut(s)	70, 715, 815
Ecl136II	GAGCTC	1 cut(s)	1273
Eco130I	CCWWGG	1 cut(s)	188
Eco24I	GRGCYC	2 cut(s)	170, 1275
Eco31I	GGTCTC	2 cut(s)	315, 927
Eco47I	GGWCC	4 cut(s)	250, 679, 997, 1356
Eco47III	AGCGCT	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	1273
Eco57I	CTGAAG	1 cut(s)	896
Eco72I	CACGTG	1 cut(s)	1113
Eco91I	GGTNACC	2 cut(s)	452, 892
EcoICRI	GAGCTC	1 cut(s)	1273
EcoO109I	RGGNCCY	2 cut(s)	250, 997
EcoO65I	GGTNACC	2 cut(s)	452, 892
EcoRII	CCWGG	5 cut(s)	456, 674, 1047, 1224, 1362
EcoT14I	CCWWGG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	722
EcoT38I	GRGCYC	2 cut(s)	170, 1275
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	6 cut(s)	88, 178, 192, 992, 1285, 1291
FalI	AAGNNNNNCTT	2 cut(s)	1327, 1359
FaqI	GGGAC	6 cut(s)	73, 236, 535, 692, 820, 1109
FatI	CATG	6 cut(s)	84, 174, 188, 988, 1281, 1287
FauI	CCCGC	1 cut(s)	1123
FauNDI	CATATG	1 cut(s)	1079
FbaI	TGATCA	2 cut(s)	846, 1195
FblI	GTMKAC	1 cut(s)	930
FokI	GGATG	2 cut(s)	716, 959
FriOI	GRGCYC	2 cut(s)	170, 1275
GlaI	GCGC	7 cut(s)	130, 600, 738, 796, 889, 913, 971
GsaI	CCCAGC	2 cut(s)	570, 1044
HaeII	RGCGCY	2 cut(s)	132, 602
HgaI	GACGC	7 cut(s)	241, 629, 755, 760, 877, 903, 1319
HhaI	GCGC	7 cut(s)	131, 601, 739, 797, 890, 914, 972
Hin1I	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
Hin1II	CATG	6 cut(s)	88, 178, 192, 992, 1285, 1291
Hin6I	GCGC	7 cut(s)	129, 599, 737, 795, 888, 912, 970
HinP1I	GCGC	7 cut(s)	129, 599, 737, 795, 888, 912, 970
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	5 cut(s)	370, 483, 532, 725, 1316
HpaI	GTTAAC	1 cut(s)	754
Hpy166II	GTNNAC	9 cut(s)	216, 231, 333, 508, 754, 789, 931, 1178, 1213
Hpy188I	TCNGA	9 cut(s)	61, 343, 359, 537, 619, 636, 946, 1258, 1330
Hpy188III	TCNNGA	4 cut(s)	104, 284, 1175, 1268
Hpy8I	GTNNAC	9 cut(s)	216, 231, 333, 508, 754, 789, 931, 1178, 1213
Hpy99I	CGWCG	8 cut(s)	98, 623, 746, 749, 764, 776, 946, 1313
HpyAV	CCTTC	8 cut(s)	148, 284, 335, 770, 808, 820, 1234, 1365
HpyCH4III	ACNGT	6 cut(s)	125, 811, 935, 1193, 1217, 1326
HpyCH4IV	ACGT	4 cut(s)	96, 576, 1112, 1180
HpyCH4V	TGCA	3 cut(s)	720, 865, 1291
HpyF3I	CTNAG	2 cut(s)	155, 635
HpySE526I	ACGT	4 cut(s)	96, 576, 1112, 1180
Hsp92I	GRCGYC	5 cut(s)	96, 233, 621, 747, 1311
Hsp92II	CATG	6 cut(s)	88, 178, 192, 992, 1285, 1291
HspAI	GCGC	7 cut(s)	129, 599, 737, 795, 888, 912, 970
Kpn2I	TCCGGA	1 cut(s)	1267
Ksp22I	TGATCA	2 cut(s)	846, 1195
KspAI	GTTAAC	1 cut(s)	754
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	7 cut(s)	829, 967, 1044, 1221, 1258, 1270, 1270
Lsp1109I	GCAGC	2 cut(s)	30, 858
LweI	GCATC	2 cut(s)	516, 729
MaeII	ACGT	4 cut(s)	96, 576, 1112, 1180
MaeIII	GTNAC	3 cut(s)	183, 452, 892
MalI	GATC	8 cut(s)	63, 608, 704, 848, 1106, 1173, 1197, 1208
MboI	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
MboII	GAAGA	9 cut(s)	254, 379, 436, 480, 659, 835, 853, 1335, 1338
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	3 cut(s)	170, 1011, 1275
MlsI	TGGCCA	1 cut(s)	767
MluCI	AATT	2 cut(s)	420, 958
MluNI	TGGCCA	1 cut(s)	767
MlyI	GAGTC	4 cut(s)	492, 526, 734, 1310
MmeI	TCCRAC	4 cut(s)	366, 642, 924, 1236
Mox20I	TGGCCA	1 cut(s)	767
Mph1103I	ATGCAT	1 cut(s)	722
MroI	TCCGGA	1 cut(s)	1267
MroXI	GAANNNNTTC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	2 cut(s)	753, 957
MslI	CAYNNNNRTG	4 cut(s)	179, 1082, 1280, 1286
Msp20I	TGGCCA	1 cut(s)	767
MspA1I	CMGCKG	5 cut(s)	134, 159, 387, 405, 1059
MspR9I	CCNGG	8 cut(s)	151, 433, 458, 520, 676, 1049, 1226, 1364
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	5 cut(s)	458, 676, 1049, 1226, 1364
MvnI	CGCG	8 cut(s)	134, 285, 737, 797, 890, 905, 914, 972
NciI	CCSGG	3 cut(s)	151, 433, 520
NcoI	CCATGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	1079
NdeII	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
NlaIII	CATG	6 cut(s)	88, 178, 192, 992, 1285, 1291
NlaIV	GGNNCC	7 cut(s)	194, 252, 340, 680, 998, 1046, 1223
NmeAIII	GCCGAG	2 cut(s)	249, 1043
NmuCI	GTSAC	3 cut(s)	183, 452, 892
NruI	TCGCGA	1 cut(s)	285
NsiI	ATGCAT	1 cut(s)	722
NspV	TTCGAA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	5 cut(s)	48, 102, 741, 747, 768
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	370
PflFI	GACNNNGTC	2 cut(s)	181, 248
PinAI	ACCGGT	2 cut(s)	335, 1200
PleI	GAGTC	4 cut(s)	491, 526, 733, 1310
PmaCI	CACGTG	1 cut(s)	1113
PmlI	CACGTG	1 cut(s)	1113
PpsI	GAGTC	4 cut(s)	491, 526, 733, 1310
Ppu21I	YACGTR	1 cut(s)	1113
PpuMI	RGGWCCY	2 cut(s)	250, 997
Psp124BI	GAGCTC	1 cut(s)	1275
Psp1406I	AACGTT	1 cut(s)	1180
Psp5II	RGGWCCY	2 cut(s)	250, 997
Psp6I	CCWGG	5 cut(s)	456, 674, 1047, 1224, 1362
PspCI	CACGTG	1 cut(s)	1113
PspEI	GGTNACC	2 cut(s)	452, 892
PspFI	CCCAGC	2 cut(s)	566, 1040
PspGI	CCWGG	5 cut(s)	456, 674, 1047, 1224, 1362
PspN4I	GGNNCC	7 cut(s)	194, 252, 340, 680, 998, 1046, 1223
PspPI	GGNCC	7 cut(s)	30, 250, 679, 997, 1132, 1142, 1356
PspPPI	RGGWCCY	2 cut(s)	250, 997
PstNI	CAGNNNCTG	1 cut(s)	871
PsyI	GACNNNGTC	2 cut(s)	181, 248
RruI	TCGCGA	1 cut(s)	285
RsaI	GTAC	6 cut(s)	37, 332, 383, 554, 788, 1214
RsaNI	GTAC	6 cut(s)	36, 331, 382, 553, 787, 1213
RseI	CAYNNNNRTG	4 cut(s)	179, 1082, 1280, 1286
Rsr2I	CGGWCCG	1 cut(s)	1356
RsrII	CGGWCCG	1 cut(s)	1356
SacI	GAGCTC	1 cut(s)	1275
SacII	CCGCGG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	753, 957
Sau3AI	GATC	8 cut(s)	61, 606, 702, 846, 1104, 1171, 1195, 1206
Sau96I	GGNCC	7 cut(s)	30, 250, 679, 997, 1132, 1142, 1356
ScaI	AGTACT	2 cut(s)	37, 554
SchI	GAGTC	4 cut(s)	492, 526, 734, 1310
ScrFI	CCNGG	8 cut(s)	151, 433, 458, 520, 676, 1049, 1226, 1364
SduI	GDGCHC	3 cut(s)	170, 1011, 1275
SfaNI	GCATC	2 cut(s)	516, 729
Sfr303I	CCGCGG	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	240
SgrAI	CRCCGGYG	1 cut(s)	791
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	4 cut(s)	250, 679, 997, 1356
SmiMI	CAYNNNNRTG	4 cut(s)	179, 1082, 1280, 1286
SmlI	CTYRAG	3 cut(s)	374, 640, 1001
SmoI	CTYRAG	3 cut(s)	374, 640, 1001
Sse9I	AATT	2 cut(s)	420, 958
SspI	AATATT	1 cut(s)	70
SstI	GAGCTC	1 cut(s)	1275
StyD4I	CCNGG	8 cut(s)	149, 431, 456, 518, 674, 1047, 1224, 1362
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	6 cut(s)	125, 811, 935, 1193, 1217, 1326
TaiI	ACGT	4 cut(s)	99, 579, 1115, 1183
TaqI	TCGA	7 cut(s)	141, 240, 705, 723, 774, 1184, 1349
TasI	AATT	2 cut(s)	420, 958
TatI	WGTACW	6 cut(s)	35, 330, 381, 552, 786, 1212
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	753, 957
Tru9I	TTAA	2 cut(s)	753, 957
TscAI	CASTG	2 cut(s)	1144, 1222
TseFI	GTSAC	3 cut(s)	183, 452, 892
TseI	GCWGC	2 cut(s)	18, 871
Tsp45I	GTSAC	3 cut(s)	183, 452, 892
TspGWI	ACGGA	3 cut(s)	201, 547, 748
TspRI	CASTG	2 cut(s)	1144, 1222
Tth111I	GACNNNGTC	2 cut(s)	181, 248
VpaK11BI	GGWCC	4 cut(s)	250, 679, 997, 1356
XmiI	GTMKAC	1 cut(s)	930
XmnI	GAANNNNTTC	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	2 cut(s)	37, 554
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.