Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001673.1

Orthogroup ID

OG0018163

Physical Location & Seq

Genomic Coordinates Reverse (-)

1274 .. 3668

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggaatcatcgtttaaggcggatgcgttgaaaggaaaggtggctttgataacgggaggcaggtcgggtactgggtttgagatttcgacccagttcgggaaacatggagcgtctattgctattatggggaggaggaggcaagtgctatactctgcttctgctgtgtctgctctccgtcttttgggattcctgtactttcttgggaggttacagggagagacagcggcagcagctaggagaagatctgagattactcctgagctggacaagcacaataaccagaatcagtggagccctatttatgatgtagcagctatacttactttcattcaggtattcgatgttgtttccattgcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0016020 GO:0031090 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

120

Amino Acids

13.12

Weight (kDa)

9.98

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018163)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141861 RchiOBHm_Chr6g0286111
rosa_multiflora	Rmu_sc0000334.1_g000031 Rmu_sc0001673.1_g000001 Rmu_sc0021808.1_g000001 Rmu_sc0025107.1_g000001
rosa_samantha	Rh2BG571800 Rh3BG073500 Rh3CG072000 Rh3DG282800 Rh6CG294400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	357
AciI	CCGC	2 cut(s)	20, 224
AfaI	GTAC	2 cut(s)	70, 194
AfiI	CCNNNNNNNGG	3 cut(s)	96, 181, 357
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	3 cut(s)	233, 262, 314
AluI	AGCT	3 cut(s)	233, 262, 314
Alw26I	GTCTC	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	227, 230, 311
BanII	GRGCYC	1 cut(s)	296
BbvI	GCAGC	3 cut(s)	239, 242, 323
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	4 cut(s)	225, 228, 231, 312
BlsI	GCNGC	4 cut(s)	226, 229, 232, 313
BmiI	GGNNCC	1 cut(s)	293
BmrI	ACTGGG	2 cut(s)	81, 85
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	2 cut(s)	81, 85
Bpu10I	CCTNAGC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 181, 357
Bse1I	ACTGG	2 cut(s)	76, 91
Bse3DI	GCAATG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	96, 181, 357
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	237, 249
BseNI	ACTGG	2 cut(s)	76, 91
BseRI	GAGGAG	2 cut(s)	145, 148
BseXI	GCAGC	3 cut(s)	239, 242, 323
BslI	CCNNNNNNNGG	3 cut(s)	96, 181, 357
BsmAI	GTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	2 cut(s)	20, 224
BspCNI	CTCAG	2 cut(s)	238, 250
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	76, 91
BssMI	GATC	1 cut(s)	242
BstDEI	CTNAG	2 cut(s)	246, 258
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 167, 230, 268
BstV1I	GCAGC	3 cut(s)	239, 242, 323
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	51
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	69, 193
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	5 cut(s)	44, 233, 262, 294, 314
CviKI_1	RGCY	5 cut(s)	44, 233, 262, 294, 314
CviQI	GTAC	2 cut(s)	69, 193
DdeI	CTNAG	2 cut(s)	246, 258
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	1 cut(s)	107
FaiI	YATR	5 cut(s)	105, 125, 148, 303, 317
FatI	CATG	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	225, 228, 231, 312
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	4 cut(s)	225, 228, 231, 312
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	4 cut(s)	225, 228, 231, 312
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	3 cut(s)	5, 186, 283
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	97, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 167, 230, 268
HpyF3I	CTNAG	2 cut(s)	246, 258
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	107, 291
LpnPI	CCDG	9 cut(s)	46, 57, 104, 197, 203, 248, 270, 293, 317
Lsp1109I	GCAGC	3 cut(s)	239, 242, 323
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	50, 123, 126, 129, 198
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	116, 167, 230, 268
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	5, 186, 283
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	226, 229, 232, 313
PspN4I	GGNNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	70, 194
RsaNI	GTAC	2 cut(s)	69, 193
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	4 cut(s)	225, 228, 231, 312
Sau3AI	GATC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	7 cut(s)	42, 65, 209, 235, 264, 316, 336
SfaNI	GCATC	1 cut(s)	13
SsiI	CCGC	2 cut(s)	20, 224
SspMI	CTAG	1 cut(s)	234
TaqI	TCGA	2 cut(s)	86, 339
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	5, 186, 283
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	3 cut(s)	227, 230, 311
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	357
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.